Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces[W]
Identifieur interne : 001A52 ( Pmc/Corpus ); précédent : 001A51; suivant : 001A53Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces[W]
Auteurs : Frédéric Choulet ; Thomas Wicker ; Camille Rustenholz ; Etienne Paux ; Jérome Salse ; Philippe Leroy ; Stéphane Schlub ; Marie-Christine Le Paslier ; Ghislaine Magdelenat ; Catherine Gonthier ; Arnaud Couloux ; Hikmet Budak ; James Breen ; Michael Pumphrey ; Sixin Liu ; Xiuying Kong ; Jizeng Jia ; Marta Gut ; Dominique Brunel ; James A. Anderson ; Bikram S. Gill ; Rudi Appels ; Beat Keller ; Catherine FeuilletSource :
- The Plant Cell [ 1040-4651 ] ; 2010.
Abstract
This article describes the molecular analysis of large contiguous sequences produced from the bread wheat genome. It provides novel insights into the number, distribution, and density of genes along chromosome 3B and reveals an unexpectedly high amount of noncollinear genes compared to model grass genomes.
Url:
DOI: 10.1105/tpc.110.074187
PubMed: 20581307
PubMed Central: 2910976
Links to Exploration step
PMC:2910976Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces<xref ref-type="author-notes" rid="fn1"><sup>[W]</sup></xref></title><author><name sortKey="Choulet, Frederic" sort="Choulet, Frederic" uniqKey="Choulet F" first="Frédéric" last="Choulet">Frédéric Choulet</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Wicker, Thomas" sort="Wicker, Thomas" uniqKey="Wicker T" first="Thomas" last="Wicker">Thomas Wicker</name><affiliation><nlm:aff id="aff2">Institute of Plant Biology, University Zurich, 8008 Zurich, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Rustenholz, Camille" sort="Rustenholz, Camille" uniqKey="Rustenholz C" first="Camille" last="Rustenholz">Camille Rustenholz</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Paux, Etienne" sort="Paux, Etienne" uniqKey="Paux E" first="Etienne" last="Paux">Etienne Paux</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Salse, Jerome" sort="Salse, Jerome" uniqKey="Salse J" first="Jérome" last="Salse">Jérome Salse</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Leroy, Philippe" sort="Leroy, Philippe" uniqKey="Leroy P" first="Philippe" last="Leroy">Philippe Leroy</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Schlub, Stephane" sort="Schlub, Stephane" uniqKey="Schlub S" first="Stéphane" last="Schlub">Stéphane Schlub</name><affiliation><nlm:aff id="aff3">Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Le Paslier, Marie Christine" sort="Le Paslier, Marie Christine" uniqKey="Le Paslier M" first="Marie-Christine" last="Le Paslier">Marie-Christine Le Paslier</name><affiliation><nlm:aff id="aff3">Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Magdelenat, Ghislaine" sort="Magdelenat, Ghislaine" uniqKey="Magdelenat G" first="Ghislaine" last="Magdelenat">Ghislaine Magdelenat</name><affiliation><nlm:aff id="aff4">Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Gonthier, Catherine" sort="Gonthier, Catherine" uniqKey="Gonthier C" first="Catherine" last="Gonthier">Catherine Gonthier</name><affiliation><nlm:aff id="aff4">Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Couloux, Arnaud" sort="Couloux, Arnaud" uniqKey="Couloux A" first="Arnaud" last="Couloux">Arnaud Couloux</name><affiliation><nlm:aff id="aff4">Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Budak, Hikmet" sort="Budak, Hikmet" uniqKey="Budak H" first="Hikmet" last="Budak">Hikmet Budak</name><affiliation><nlm:aff id="aff5">Sabanci University, Engineering and Natural Sciences, Biological Science and Bioengineering Program, 34956 Tuzla-Istanbul, Turkey</nlm:aff></affiliation></author><author><name sortKey="Breen, James" sort="Breen, James" uniqKey="Breen J" first="James" last="Breen">James Breen</name><affiliation><nlm:aff id="aff6">Centre for Comparative Genomics, Murdoch University, Western Australia, WA 6150, Australia</nlm:aff></affiliation></author><author><name sortKey="Pumphrey, Michael" sort="Pumphrey, Michael" uniqKey="Pumphrey M" first="Michael" last="Pumphrey">Michael Pumphrey</name><affiliation><nlm:aff id="aff7">Department of Plant Pathology, Wheat Genetic and Genomic Resources Center, Kansas State University, Manhattan, Kansas 66506-5502</nlm:aff></affiliation></author><author><name sortKey="Liu, Sixin" sort="Liu, Sixin" uniqKey="Liu S" first="Sixin" last="Liu">Sixin Liu</name><affiliation><nlm:aff id="aff8">Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108</nlm:aff></affiliation></author><author><name sortKey="Kong, Xiuying" sort="Kong, Xiuying" uniqKey="Kong X" first="Xiuying" last="Kong">Xiuying Kong</name><affiliation><nlm:aff id="aff9">National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Crop Germplasm Resources and Utilization, Ministry of Agriculture Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China</nlm:aff></affiliation></author><author><name sortKey="Jia, Jizeng" sort="Jia, Jizeng" uniqKey="Jia J" first="Jizeng" last="Jia">Jizeng Jia</name><affiliation><nlm:aff id="aff9">National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Crop Germplasm Resources and Utilization, Ministry of Agriculture Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China</nlm:aff></affiliation></author><author><name sortKey="Gut, Marta" sort="Gut, Marta" uniqKey="Gut M" first="Marta" last="Gut">Marta Gut</name><affiliation><nlm:aff id="aff10">Department of Technology Development, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Brunel, Dominique" sort="Brunel, Dominique" uniqKey="Brunel D" first="Dominique" last="Brunel">Dominique Brunel</name><affiliation><nlm:aff id="aff3">Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Anderson, James A" sort="Anderson, James A" uniqKey="Anderson J" first="James A." last="Anderson">James A. Anderson</name><affiliation><nlm:aff id="aff8">Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108</nlm:aff></affiliation></author><author><name sortKey="Gill, Bikram S" sort="Gill, Bikram S" uniqKey="Gill B" first="Bikram S." last="Gill">Bikram S. Gill</name><affiliation><nlm:aff id="aff7">Department of Plant Pathology, Wheat Genetic and Genomic Resources Center, Kansas State University, Manhattan, Kansas 66506-5502</nlm:aff></affiliation></author><author><name sortKey="Appels, Rudi" sort="Appels, Rudi" uniqKey="Appels R" first="Rudi" last="Appels">Rudi Appels</name><affiliation><nlm:aff id="aff6">Centre for Comparative Genomics, Murdoch University, Western Australia, WA 6150, Australia</nlm:aff></affiliation></author><author><name sortKey="Keller, Beat" sort="Keller, Beat" uniqKey="Keller B" first="Beat" last="Keller">Beat Keller</name><affiliation><nlm:aff id="aff2">Institute of Plant Biology, University Zurich, 8008 Zurich, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Feuillet, Catherine" sort="Feuillet, Catherine" uniqKey="Feuillet C" first="Catherine" last="Feuillet">Catherine Feuillet</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">20581307</idno><idno type="pmc">2910976</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2910976</idno><idno type="RBID">PMC:2910976</idno><idno type="doi">10.1105/tpc.110.074187</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">001A52</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001A52</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces<xref ref-type="author-notes" rid="fn1"><sup>[W]</sup></xref></title><author><name sortKey="Choulet, Frederic" sort="Choulet, Frederic" uniqKey="Choulet F" first="Frédéric" last="Choulet">Frédéric Choulet</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Wicker, Thomas" sort="Wicker, Thomas" uniqKey="Wicker T" first="Thomas" last="Wicker">Thomas Wicker</name><affiliation><nlm:aff id="aff2">Institute of Plant Biology, University Zurich, 8008 Zurich, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Rustenholz, Camille" sort="Rustenholz, Camille" uniqKey="Rustenholz C" first="Camille" last="Rustenholz">Camille Rustenholz</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Paux, Etienne" sort="Paux, Etienne" uniqKey="Paux E" first="Etienne" last="Paux">Etienne Paux</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Salse, Jerome" sort="Salse, Jerome" uniqKey="Salse J" first="Jérome" last="Salse">Jérome Salse</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Leroy, Philippe" sort="Leroy, Philippe" uniqKey="Leroy P" first="Philippe" last="Leroy">Philippe Leroy</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author><author><name sortKey="Schlub, Stephane" sort="Schlub, Stephane" uniqKey="Schlub S" first="Stéphane" last="Schlub">Stéphane Schlub</name><affiliation><nlm:aff id="aff3">Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Le Paslier, Marie Christine" sort="Le Paslier, Marie Christine" uniqKey="Le Paslier M" first="Marie-Christine" last="Le Paslier">Marie-Christine Le Paslier</name><affiliation><nlm:aff id="aff3">Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Magdelenat, Ghislaine" sort="Magdelenat, Ghislaine" uniqKey="Magdelenat G" first="Ghislaine" last="Magdelenat">Ghislaine Magdelenat</name><affiliation><nlm:aff id="aff4">Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Gonthier, Catherine" sort="Gonthier, Catherine" uniqKey="Gonthier C" first="Catherine" last="Gonthier">Catherine Gonthier</name><affiliation><nlm:aff id="aff4">Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Couloux, Arnaud" sort="Couloux, Arnaud" uniqKey="Couloux A" first="Arnaud" last="Couloux">Arnaud Couloux</name><affiliation><nlm:aff id="aff4">Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Budak, Hikmet" sort="Budak, Hikmet" uniqKey="Budak H" first="Hikmet" last="Budak">Hikmet Budak</name><affiliation><nlm:aff id="aff5">Sabanci University, Engineering and Natural Sciences, Biological Science and Bioengineering Program, 34956 Tuzla-Istanbul, Turkey</nlm:aff></affiliation></author><author><name sortKey="Breen, James" sort="Breen, James" uniqKey="Breen J" first="James" last="Breen">James Breen</name><affiliation><nlm:aff id="aff6">Centre for Comparative Genomics, Murdoch University, Western Australia, WA 6150, Australia</nlm:aff></affiliation></author><author><name sortKey="Pumphrey, Michael" sort="Pumphrey, Michael" uniqKey="Pumphrey M" first="Michael" last="Pumphrey">Michael Pumphrey</name><affiliation><nlm:aff id="aff7">Department of Plant Pathology, Wheat Genetic and Genomic Resources Center, Kansas State University, Manhattan, Kansas 66506-5502</nlm:aff></affiliation></author><author><name sortKey="Liu, Sixin" sort="Liu, Sixin" uniqKey="Liu S" first="Sixin" last="Liu">Sixin Liu</name><affiliation><nlm:aff id="aff8">Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108</nlm:aff></affiliation></author><author><name sortKey="Kong, Xiuying" sort="Kong, Xiuying" uniqKey="Kong X" first="Xiuying" last="Kong">Xiuying Kong</name><affiliation><nlm:aff id="aff9">National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Crop Germplasm Resources and Utilization, Ministry of Agriculture Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China</nlm:aff></affiliation></author><author><name sortKey="Jia, Jizeng" sort="Jia, Jizeng" uniqKey="Jia J" first="Jizeng" last="Jia">Jizeng Jia</name><affiliation><nlm:aff id="aff9">National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Crop Germplasm Resources and Utilization, Ministry of Agriculture Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China</nlm:aff></affiliation></author><author><name sortKey="Gut, Marta" sort="Gut, Marta" uniqKey="Gut M" first="Marta" last="Gut">Marta Gut</name><affiliation><nlm:aff id="aff10">Department of Technology Development, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Brunel, Dominique" sort="Brunel, Dominique" uniqKey="Brunel D" first="Dominique" last="Brunel">Dominique Brunel</name><affiliation><nlm:aff id="aff3">Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</nlm:aff></affiliation></author><author><name sortKey="Anderson, James A" sort="Anderson, James A" uniqKey="Anderson J" first="James A." last="Anderson">James A. Anderson</name><affiliation><nlm:aff id="aff8">Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108</nlm:aff></affiliation></author><author><name sortKey="Gill, Bikram S" sort="Gill, Bikram S" uniqKey="Gill B" first="Bikram S." last="Gill">Bikram S. Gill</name><affiliation><nlm:aff id="aff7">Department of Plant Pathology, Wheat Genetic and Genomic Resources Center, Kansas State University, Manhattan, Kansas 66506-5502</nlm:aff></affiliation></author><author><name sortKey="Appels, Rudi" sort="Appels, Rudi" uniqKey="Appels R" first="Rudi" last="Appels">Rudi Appels</name><affiliation><nlm:aff id="aff6">Centre for Comparative Genomics, Murdoch University, Western Australia, WA 6150, Australia</nlm:aff></affiliation></author><author><name sortKey="Keller, Beat" sort="Keller, Beat" uniqKey="Keller B" first="Beat" last="Keller">Beat Keller</name><affiliation><nlm:aff id="aff2">Institute of Plant Biology, University Zurich, 8008 Zurich, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Feuillet, Catherine" sort="Feuillet, Catherine" uniqKey="Feuillet C" first="Catherine" last="Feuillet">Catherine Feuillet</name><affiliation><nlm:aff id="aff1">Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</nlm:aff></affiliation></author></analytic><series><title level="j">The Plant Cell</title><idno type="ISSN">1040-4651</idno><idno type="eISSN">1532-298X</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>This article describes the molecular analysis of large contiguous sequences produced from the bread wheat genome. It provides novel insights into the number, distribution, and density of genes along chromosome 3B and reveals an unexpectedly high amount of noncollinear genes compared to model grass genomes.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Cell</journal-id><journal-id journal-id-type="hwp">plantcell</journal-id><journal-id journal-id-type="publisher-id">aspb</journal-id><journal-title-group><journal-title>The Plant Cell</journal-title></journal-title-group><issn pub-type="ppub">1040-4651</issn><issn pub-type="epub">1532-298X</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">20581307</article-id><article-id pub-id-type="pmc">2910976</article-id><article-id pub-id-type="publisher-id">074187</article-id><article-id pub-id-type="doi">10.1105/tpc.110.074187</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Articles</subject></subj-group></article-categories><title-group><article-title>Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces<xref ref-type="author-notes" rid="fn1"><sup>[W]</sup></xref></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Choulet</surname><given-names>Frédéric</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wicker</surname><given-names>Thomas</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rustenholz</surname><given-names>Camille</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Paux</surname><given-names>Etienne</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Salse</surname><given-names>Jérome</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Leroy</surname><given-names>Philippe</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Schlub</surname><given-names>Stéphane</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Le Paslier</surname><given-names>Marie-Christine</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Magdelenat</surname><given-names>Ghislaine</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gonthier</surname><given-names>Catherine</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Couloux</surname><given-names>Arnaud</given-names></name><xref ref-type="aff" rid="aff4"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Budak</surname><given-names>Hikmet</given-names></name><xref ref-type="aff" rid="aff5"><sup>e</sup></xref></contrib><contrib contrib-type="author"><name><surname>Breen</surname><given-names>James</given-names></name><xref ref-type="aff" rid="aff6"><sup>f</sup></xref></contrib><contrib contrib-type="author"><name><surname>Pumphrey</surname><given-names>Michael</given-names></name><xref ref-type="aff" rid="aff7"><sup>g</sup></xref></contrib><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Sixin</given-names></name><xref ref-type="aff" rid="aff8"><sup>h</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kong</surname><given-names>Xiuying</given-names></name><xref ref-type="aff" rid="aff9"><sup>i</sup></xref></contrib><contrib contrib-type="author"><name><surname>Jia</surname><given-names>Jizeng</given-names></name><xref ref-type="aff" rid="aff9"><sup>i</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gut</surname><given-names>Marta</given-names></name><xref ref-type="aff" rid="aff10"><sup>j</sup></xref></contrib><contrib contrib-type="author"><name><surname>Brunel</surname><given-names>Dominique</given-names></name><xref ref-type="aff" rid="aff3"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Anderson</surname><given-names>James A.</given-names></name><xref ref-type="aff" rid="aff8"><sup>h</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gill</surname><given-names>Bikram S.</given-names></name><xref ref-type="aff" rid="aff7"><sup>g</sup></xref></contrib><contrib contrib-type="author"><name><surname>Appels</surname><given-names>Rudi</given-names></name><xref ref-type="aff" rid="aff6"><sup>f</sup></xref></contrib><contrib contrib-type="author"><name><surname>Keller</surname><given-names>Beat</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Feuillet</surname><given-names>Catherine</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="corresp" rid="cor1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><label>a</label>Institut National de la Recherche Agronomique, Université Blaise Pascal, Unité Mixte de Recherche 1095 Genetics Diversity and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France</aff><aff id="aff2"><label>b</label>Institute of Plant Biology, University Zurich, 8008 Zurich, Switzerland</aff><aff id="aff3"><label>c</label>Institut National de la Recherche Agronomique, Unité de Recherche 1279 Etude du Polymorphisme des Génomes Végétaux, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</aff><aff id="aff4"><label>d</label>Génoscope, Institut de Génomique, Commissariat à l'Energie Atomique, F-91057 Evry, France</aff><aff id="aff5"><label>e</label>Sabanci University, Engineering and Natural Sciences, Biological Science and Bioengineering Program, 34956 Tuzla-Istanbul, Turkey</aff><aff id="aff6"><label>f</label>Centre for Comparative Genomics, Murdoch University, Western Australia, WA 6150, Australia</aff><aff id="aff7"><label>g</label>Department of Plant Pathology, Wheat Genetic and Genomic Resources Center, Kansas State University, Manhattan, Kansas 66506-5502</aff><aff id="aff8"><label>h</label>Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108</aff><aff id="aff9"><label>i</label>National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Crop Germplasm Resources and Utilization, Ministry of Agriculture Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R. China</aff><aff id="aff10"><label>j</label>Department of Technology Development, Commissariat à l'Energie Atomique-Institut de Génomique-Centre National de Génotypage, F-91057 Evry, France</aff><author-notes><corresp id="cor1"><label>1</label>Address correspondence to <email>catherine.feuillet@clermont.inra.fr</email>.</corresp><fn><p>The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (<ext-link ext-link-type="uri" xlink:href="www.plantcell.org">www.plantcell.org</ext-link>) is: Frédéric Choulet (<email>frederic.choulet@clermont.inra.fr</email>).</p></fn><fn id="fn1"><label>[W]</label><p>Online version contains Web-only data.</p></fn><fn><p><ext-link ext-link-type="uri" xlink:href="www.plantcell.org/cgi/doi/10.1105/tpc.110.074187">www.plantcell.org/cgi/doi/10.1105/tpc.110.074187</ext-link></p></fn></author-notes><pmc-comment>Fake ppub date generated by PMC from publisher pub-date/@pub-type='epub-ppub' </pmc-comment>
<pub-date pub-type="ppub"><month>6</month><year>2010</year></pub-date><pub-date pub-type="epub"><day>25</day><month>6</month><year>2010</year></pub-date><volume>22</volume><issue>6</issue><fpage>1686</fpage><lpage>1701</lpage><history><date date-type="received"><day>21</day><month>1</month><year>2010</year></date><date date-type="rev-recd"><day>26</day><month>5</month><year>2010</year></date><date date-type="accepted"><day>8</day><month>6</month><year>2010</year></date></history><permissions><copyright-statement>© 2010 American Society of Plant Biologists</copyright-statement><copyright-year>2010</copyright-year></permissions><abstract abstract-type="precis"><p>This article describes the molecular analysis of large contiguous sequences produced from the bread wheat genome. It provides novel insights into the number, distribution, and density of genes along chromosome 3B and reveals an unexpectedly high amount of noncollinear genes compared to model grass genomes.</p></abstract><abstract><p>To improve our understanding of the organization and evolution of the wheat (<italic>Triticum aestivum</italic>) genome, we sequenced and annotated 13-Mb contigs (18.2 Mb) originating from different regions of its largest chromosome, 3B (1 Gb), and produced a 2x chromosome survey by shotgun Illumina/Solexa sequencing. All regions carried genes irrespective of their chromosomal location. However, gene distribution was not random, with 75% of them clustered into small islands containing three genes on average. A twofold increase of gene density was observed toward the telomeres likely due to high tandem and interchromosomal duplication events. A total of 3222 transposable elements were identified, including 800 new families. Most of them are complete but showed a highly nested structure spread over distances as large as 200 kb. A succession of amplification waves involving different transposable element families led to contrasted sequence compositions between the proximal and distal regions. Finally, with an estimate of 50,000 genes per diploid genome, our data suggest that wheat may have a higher gene number than other cereals. Indeed, comparisons with rice (<italic>Oryza sativa</italic>) and <italic>Brachypodium</italic> revealed that a high number of additional noncollinear genes are interspersed within a highly conserved ancestral grass gene backbone, supporting the idea of an accelerated evolution in the <italic>Triticeae</italic> lineages.</p></abstract></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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