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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants</title><author><name sortKey="Banks, Jo Ann" sort="Banks, Jo Ann" uniqKey="Banks J" first="Jo Ann" last="Banks">Jo Ann Banks</name><affiliation><nlm:aff id="A1">Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Nishiyama, Tomoaki" sort="Nishiyama, Tomoaki" uniqKey="Nishiyama T" first="Tomoaki" last="Nishiyama">Tomoaki Nishiyama</name><affiliation><nlm:aff id="A2">Advanced Science Research Center, Kanazawa University, Kanazawa, 920-0934 Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Hasebe, Mitsuyasu" sort="Hasebe, Mitsuyasu" uniqKey="Hasebe M" first="Mitsuyasu" last="Hasebe">Mitsuyasu Hasebe</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Bowman, John L" sort="Bowman, John L" uniqKey="Bowman J" first="John L." last="Bowman">John L. Bowman</name><affiliation><nlm:aff id="A6">School of Biological Sciences, Monash University, Clayton Campus, Melbourne, Victoria 3800, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A7">Section Plant Biology, University of California, Davis, CA 95616, USA</nlm:aff></affiliation></author><author><name sortKey="Gribskov, Michael" sort="Gribskov, Michael" uniqKey="Gribskov M" first="Michael" last="Gribskov">Michael Gribskov</name><affiliation><nlm:aff id="A8">Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Depamphilis, Claude" sort="Depamphilis, Claude" uniqKey="Depamphilis C" first="Claude" last="Depamphilis">Claude Depamphilis</name><affiliation><nlm:aff id="A9">Department of Biology and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, PA 16802, USA</nlm:aff></affiliation></author><author><name sortKey="Albert, Victor A" sort="Albert, Victor A" uniqKey="Albert V" first="Victor A." last="Albert">Victor A. Albert</name><affiliation><nlm:aff id="A10">Department of Biological Sciences, University at Buffalo, Buffalo, New York 14260</nlm:aff></affiliation></author><author><name sortKey="Aono, Naoki" sort="Aono, Naoki" uniqKey="Aono N" first="Naoki" last="Aono">Naoki Aono</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Aoyama, Tsuyoshi" sort="Aoyama, Tsuyoshi" uniqKey="Aoyama T" first="Tsuyoshi" last="Aoyama">Tsuyoshi Aoyama</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Ambrose, Barbara A" sort="Ambrose, Barbara A" uniqKey="Ambrose B" first="Barbara A." last="Ambrose">Barbara A. Ambrose</name><affiliation><nlm:aff id="A11">The New York Botanical Garden, Bronx, NY 10458, USA</nlm:aff></affiliation></author><author><name sortKey="Ashton, Neil W" sort="Ashton, Neil W" uniqKey="Ashton N" first="Neil W." last="Ashton">Neil W. Ashton</name><affiliation><nlm:aff id="A12">Department of Biology, University of Regina, 3737 Wascana Parkway, Regina, SK, S4S 0A2, Canada</nlm:aff></affiliation></author><author><name sortKey="Axtell, Michael J" sort="Axtell, Michael J" uniqKey="Axtell M" first="Michael J." last="Axtell">Michael J. Axtell</name><affiliation><nlm:aff id="A9">Department of Biology and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, PA 16802, USA</nlm:aff></affiliation></author><author><name sortKey="Barker, Elizabeth" sort="Barker, Elizabeth" uniqKey="Barker E" first="Elizabeth" last="Barker">Elizabeth Barker</name><affiliation><nlm:aff id="A12">Department of Biology, University of Regina, 3737 Wascana Parkway, Regina, SK, S4S 0A2, Canada</nlm:aff></affiliation></author><author><name sortKey="Barker, Michael S" sort="Barker, Michael S" uniqKey="Barker M" first="Michael S." last="Barker">Michael S. Barker</name><affiliation><nlm:aff id="A13">Department of Ecology & Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA</nlm:aff></affiliation></author><author><name sortKey="Bennetzen, Jeffrey L" sort="Bennetzen, Jeffrey L" uniqKey="Bennetzen J" first="Jeffrey L." last="Bennetzen">Jeffrey L. Bennetzen</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Bonawitz, Nicholas D" sort="Bonawitz, Nicholas D" uniqKey="Bonawitz N" first="Nicholas D." last="Bonawitz">Nicholas D. Bonawitz</name><affiliation><nlm:aff id="A15">Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Chapple, Clint" sort="Chapple, Clint" uniqKey="Chapple C" first="Clint" last="Chapple">Clint Chapple</name><affiliation><nlm:aff id="A15">Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Cheng, Chaoyang" sort="Cheng, Chaoyang" uniqKey="Cheng C" first="Chaoyang" last="Cheng">Chaoyang Cheng</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Correa, Luiz Gustavo Guedes" sort="Correa, Luiz Gustavo Guedes" uniqKey="Correa L" first="Luiz Gustavo Guedes" last="Correa">Luiz Gustavo Guedes Correa</name><affiliation><nlm:aff id="A16">Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</nlm:aff></affiliation></author><author><name sortKey="Dacre, Michael" sort="Dacre, Michael" uniqKey="Dacre M" first="Michael" last="Dacre">Michael Dacre</name><affiliation><nlm:aff id="A17">Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies 10010 North Torrey Pines Rd, La Jolla, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Debarry, Jeremy" sort="Debarry, Jeremy" uniqKey="Debarry J" first="Jeremy" last="Debarry">Jeremy Debarry</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Dreyer, Ingo" sort="Dreyer, Ingo" uniqKey="Dreyer I" first="Ingo" last="Dreyer">Ingo Dreyer</name><affiliation><nlm:aff id="A18">Heisenberg-Group BPMPB, University of Potsdam, 14476 Potsdam-Golm, Germany</nlm:aff></affiliation></author><author><name sortKey="Elias, Marek" sort="Elias, Marek" uniqKey="Elias M" first="Marek" last="Elias">Marek Elias</name><affiliation><nlm:aff id="A19">Faculty of Science, Department of Botany, Charles University in Prague, 128 01 Prague, Benatska 2, Czech Republic</nlm:aff></affiliation></author><author><name sortKey="Engstrom, Eric M" sort="Engstrom, Eric M" uniqKey="Engstrom E" first="Eric M." last="Engstrom">Eric M. Engstrom</name><affiliation><nlm:aff id="A20">Department of Biology, The College of William and Mary, Williamsburg, VA 23187, USA</nlm:aff></affiliation></author><author><name sortKey="Estelle, Mark" sort="Estelle, Mark" uniqKey="Estelle M" first="Mark" last="Estelle">Mark Estelle</name><affiliation><nlm:aff id="A21">Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093, USA</nlm:aff></affiliation></author><author><name sortKey="Feng, Liang" sort="Feng, Liang" uniqKey="Feng L" first="Liang" last="Feng">Liang Feng</name><affiliation><nlm:aff id="A22">Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Finet, Cedric" sort="Finet, Cedric" uniqKey="Finet C" first="Cédric" last="Finet">Cédric Finet</name><affiliation><nlm:aff id="A23">Laboratoire de Reproduction et Développement des Plantes, Ecole Normale Supérieurede Lyon, Lyon F-69364, France</nlm:aff></affiliation></author><author><name sortKey="Floyd, Sandra K" sort="Floyd, Sandra K" uniqKey="Floyd S" first="Sandra K." last="Floyd">Sandra K. Floyd</name><affiliation><nlm:aff id="A6">School of Biological Sciences, Monash University, Clayton Campus, Melbourne, Victoria 3800, Australia</nlm:aff></affiliation></author><author><name sortKey="Frommer, Wolf B" sort="Frommer, Wolf B" uniqKey="Frommer W" first="Wolf B." last="Frommer">Wolf B. Frommer</name><affiliation><nlm:aff id="A24">Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA</nlm:aff></affiliation></author><author><name sortKey="Fujita, Tomomichi" sort="Fujita, Tomomichi" uniqKey="Fujita T" first="Tomomichi" last="Fujita">Tomomichi Fujita</name><affiliation><nlm:aff id="A25">Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan</nlm:aff></affiliation></author><author><name sortKey="Gramzow, Lydia" sort="Gramzow, Lydia" uniqKey="Gramzow L" first="Lydia" last="Gramzow">Lydia Gramzow</name><affiliation><nlm:aff id="A26">Department of Genetics, Friedrich Schiller University Jena, D-07743, Jena, Germany</nlm:aff></affiliation></author><author><name sortKey="Gutensohn, Michael" sort="Gutensohn, Michael" uniqKey="Gutensohn M" first="Michael" last="Gutensohn">Michael Gutensohn</name><affiliation><nlm:aff id="A27">Department of Horticulture and Landscape Architecture, Purdue University, W. Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Harholt, Jesper" sort="Harholt, Jesper" uniqKey="Harholt J" first="Jesper" last="Harholt">Jesper Harholt</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Hattori, Mitsuru" sort="Hattori, Mitsuru" uniqKey="Hattori M" first="Mitsuru" last="Hattori">Mitsuru Hattori</name><affiliation><nlm:aff id="A29">Center for Gene Research, Nagoya University, Nagoya 464-8602, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A30">Department of Chemistry, School of Science, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan</nlm:aff></affiliation></author><author><name sortKey="Heyl, Alexander" sort="Heyl, Alexander" uniqKey="Heyl A" first="Alexander" last="Heyl">Alexander Heyl</name><affiliation><nlm:aff id="A31">Institute for Biology/Applied Genetics/DCPS, Freie Universität Berlin, 14195 Berlin, Germany</nlm:aff></affiliation></author><author><name sortKey="Hirai, Tadayoshi" sort="Hirai, Tadayoshi" uniqKey="Hirai T" first="Tadayoshi" last="Hirai">Tadayoshi Hirai</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A32">Graduate School of Life and Environmental Sciences, Gene Research Center, University of Tsukuba, Tsukuba 305-8572, Japan</nlm:aff></affiliation></author><author><name sortKey="Hiwatashi, Yuji" sort="Hiwatashi, Yuji" uniqKey="Hiwatashi Y" first="Yuji" last="Hiwatashi">Yuji Hiwatashi</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Ishikawa, Masaki" sort="Ishikawa, Masaki" uniqKey="Ishikawa M" first="Masaki" last="Ishikawa">Masaki Ishikawa</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Iwata, Mineko" sort="Iwata, Mineko" uniqKey="Iwata M" first="Mineko" last="Iwata">Mineko Iwata</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Karol, Kenneth G" sort="Karol, Kenneth G" uniqKey="Karol K" first="Kenneth G." last="Karol">Kenneth G. Karol</name><affiliation><nlm:aff id="A33">The New York Botanical Garden, Bronx, NY 10458-5126, USA</nlm:aff></affiliation></author><author><name sortKey="Koehler, Barbara" sort="Koehler, Barbara" uniqKey="Koehler B" first="Barbara" last="Koehler">Barbara Koehler</name><affiliation><nlm:aff id="A16">Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</nlm:aff></affiliation></author><author><name sortKey="Kolukisaoglu, Uener" sort="Kolukisaoglu, Uener" uniqKey="Kolukisaoglu U" first="Uener" last="Kolukisaoglu">Uener Kolukisaoglu</name><affiliation><nlm:aff id="A34">Center for Life Science Automation, University of Rostock, D–18119 Rostock, Germany</nlm:aff></affiliation></author><author><name sortKey="Kubo, Minoru" sort="Kubo, Minoru" uniqKey="Kubo M" first="Minoru" last="Kubo">Minoru Kubo</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Kurata, Tetsuya" sort="Kurata, Tetsuya" uniqKey="Kurata T" first="Tetsuya" last="Kurata">Tetsuya Kurata</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A35">Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan</nlm:aff></affiliation></author><author><name sortKey="Lalonde, Sylvie" sort="Lalonde, Sylvie" uniqKey="Lalonde S" first="Sylvie" last="Lalonde">Sylvie Lalonde</name><affiliation><nlm:aff id="A24">Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA</nlm:aff></affiliation></author><author><name sortKey="Li, Kejie" sort="Li, Kejie" uniqKey="Li K" first="Kejie" last="Li">Kejie Li</name><affiliation><nlm:aff id="A8">Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name><affiliation><nlm:aff id="A8">Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A36">Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA</nlm:aff></affiliation></author><author><name sortKey="Litt, Amy" sort="Litt, Amy" uniqKey="Litt A" first="Amy" last="Litt">Amy Litt</name><affiliation><nlm:aff id="A33">The New York Botanical Garden, Bronx, NY 10458-5126, USA</nlm:aff></affiliation></author><author><name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name><affiliation><nlm:aff id="A37">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation></author><author><name sortKey="Manning, Gerard" sort="Manning, Gerard" uniqKey="Manning G" first="Gerard" last="Manning">Gerard Manning</name><affiliation><nlm:aff id="A17">Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies 10010 North Torrey Pines Rd, La Jolla, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Maruyama, Takeshi" sort="Maruyama, Takeshi" uniqKey="Maruyama T" first="Takeshi" last="Maruyama">Takeshi Maruyama</name><affiliation><nlm:aff id="A38">Graduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan</nlm:aff></affiliation></author><author><name sortKey="Michael, Todd P" sort="Michael, Todd P" uniqKey="Michael T" first="Todd P." last="Michael">Todd P. Michael</name><affiliation><nlm:aff id="A39">Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey and Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA</nlm:aff></affiliation></author><author><name sortKey="Mikami, Koji" sort="Mikami, Koji" uniqKey="Mikami K" first="Koji" last="Mikami">Koji Mikami</name><affiliation><nlm:aff id="A40">Faculty of Fisheries Sciences, Hokkaido University, Hakodate 041-8611, Japan</nlm:aff></affiliation></author><author><name sortKey="Miyazaki, Saori" sort="Miyazaki, Saori" uniqKey="Miyazaki S" first="Saori" last="Miyazaki">Saori Miyazaki</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A41">National Institute of Genetics, Mishima 411-8540 Japan</nlm:aff></affiliation></author><author><name sortKey="Morinaga, Shin Ichi" sort="Morinaga, Shin Ichi" uniqKey="Morinaga S" first="Shin-Ichi" last="Morinaga">Shin-Ichi Morinaga</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A42">Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan</nlm:aff></affiliation></author><author><name sortKey="Murata, Takashi" sort="Murata, Takashi" uniqKey="Murata T" first="Takashi" last="Murata">Takashi Murata</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Mueller Roeber, Bernd" sort="Mueller Roeber, Bernd" uniqKey="Mueller Roeber B" first="Bernd" last="Mueller-Roeber">Bernd Mueller-Roeber</name><affiliation><nlm:aff id="A16">Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</nlm:aff></affiliation></author><author><name sortKey="Nelson, David R" sort="Nelson, David R" uniqKey="Nelson D" first="David R." last="Nelson">David R. Nelson</name><affiliation><nlm:aff id="A43">Department of Microbiology, Immunology and Biochemistry, University of Tennessee, Memphis, TN 38163, USA</nlm:aff></affiliation></author><author><name sortKey="Obara, Mari" sort="Obara, Mari" uniqKey="Obara M" first="Mari" last="Obara">Mari Obara</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A44">Japan Science and Technology Agency, Sapporo 060-0819, Japan</nlm:aff></affiliation></author><author><name sortKey="Oguri, Yasuko" sort="Oguri, Yasuko" uniqKey="Oguri Y" first="Yasuko" last="Oguri">Yasuko Oguri</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Olmstead, Richard G" sort="Olmstead, Richard G" uniqKey="Olmstead R" first="Richard G." last="Olmstead">Richard G. Olmstead</name><affiliation><nlm:aff id="A45">Department of Biology, University of Washington, Seattle, WA 98195-5325, USA</nlm:aff></affiliation></author><author><name sortKey="Onodera, Naoko" sort="Onodera, Naoko" uniqKey="Onodera N" first="Naoko" last="Onodera">Naoko Onodera</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A46">Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada</nlm:aff></affiliation></author><author><name sortKey="Petersen, Bent Larsen" sort="Petersen, Bent Larsen" uniqKey="Petersen B" first="Bent Larsen" last="Petersen">Bent Larsen Petersen</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Pils, Birgit" sort="Pils, Birgit" uniqKey="Pils B" first="Birgit" last="Pils">Birgit Pils</name><affiliation><nlm:aff id="A47">Hamilton Bonaduz AG, Bonaduz 7402, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Prigge, Michael" sort="Prigge, Michael" uniqKey="Prigge M" first="Michael" last="Prigge">Michael Prigge</name><affiliation><nlm:aff id="A21">Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093, USA</nlm:aff></affiliation></author><author><name sortKey="Rensing, Stefan A" sort="Rensing, Stefan A" uniqKey="Rensing S" first="Stefan A." last="Rensing">Stefan A. Rensing</name><affiliation><nlm:aff id="A48">Faculty of Biology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A49">BIOSS Centre for Biological Signaling Studies, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A50">FRISYS Freiburg Initiative for Systems Biology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation></author><author><name sortKey="Ria O Pach N, Diego Mauricio" sort="Ria O Pach N, Diego Mauricio" uniqKey="Ria O Pach N D" first="Diego Mauricio" last="Ria O-Pach N">Diego Mauricio Ria O-Pach N</name><affiliation><nlm:aff id="A51">GabiPD team, Bioinformatics Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A52">Group of Computational and Evolutionary Biology, Biological Sciences Department, Universidad de los Andes, Bogotá D.C., Colombia</nlm:aff></affiliation></author><author><name sortKey="Roberts, Alison W" sort="Roberts, Alison W" uniqKey="Roberts A" first="Alison W." last="Roberts">Alison W. Roberts</name><affiliation><nlm:aff id="A53">Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA</nlm:aff></affiliation></author><author><name sortKey="Sato, Yoshikatsu" sort="Sato, Yoshikatsu" uniqKey="Sato Y" first="Yoshikatsu" last="Sato">Yoshikatsu Sato</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Scheller, Henrik Vibe" sort="Scheller, Henrik Vibe" uniqKey="Scheller H" first="Henrik Vibe" last="Scheller">Henrik Vibe Scheller</name><affiliation><nlm:aff id="A37">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A54">Joint BioEnergy Institute, Feedstocks Division, Emeryville, CA 94608, USA</nlm:aff></affiliation></author><author><name sortKey="Schulz, Burkhard" sort="Schulz, Burkhard" uniqKey="Schulz B" first="Burkhard" last="Schulz">Burkhard Schulz</name><affiliation><nlm:aff id="A27">Department of Horticulture and Landscape Architecture, Purdue University, W. Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Schulz, Christian" sort="Schulz, Christian" uniqKey="Schulz C" first="Christian" last="Schulz">Christian Schulz</name><affiliation><nlm:aff id="A55">Department of Evolution and Biodiversity of Plants, Ruhr-University Bochum, Bochum 44780, Germany</nlm:aff></affiliation></author><author><name sortKey="Shakirov, Eugene V" sort="Shakirov, Eugene V" uniqKey="Shakirov E" first="Eugene V." last="Shakirov">Eugene V. Shakirov</name><affiliation><nlm:aff id="A56">Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA</nlm:aff></affiliation></author><author><name sortKey="Shibagaki, Nakako" sort="Shibagaki, Nakako" uniqKey="Shibagaki N" first="Nakako" last="Shibagaki">Nakako Shibagaki</name><affiliation><nlm:aff id="A57">Graduate School of Engineering, Osaka University, Osaka 565-0871, Japan</nlm:aff></affiliation></author><author><name sortKey="Shinohara, Naoki" sort="Shinohara, Naoki" uniqKey="Shinohara N" first="Naoki" last="Shinohara">Naoki Shinohara</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Shippen, Dorothy E" sort="Shippen, Dorothy E" uniqKey="Shippen D" first="Dorothy E." last="Shippen">Dorothy E. Shippen</name><affiliation><nlm:aff id="A56">Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA</nlm:aff></affiliation></author><author><name sortKey="S Rensen, Iben" sort="S Rensen, Iben" uniqKey="S Rensen I" first="Iben" last="S Rensen">Iben S Rensen</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Sotooka, Ryo" sort="Sotooka, Ryo" uniqKey="Sotooka R" first="Ryo" last="Sotooka">Ryo Sotooka</name><affiliation><nlm:aff id="A58">School of Science, Hokkaido University, Sapporo 060-0810, Japan</nlm:aff></affiliation></author><author><name sortKey="Sugimoto, Nagisa" sort="Sugimoto, Nagisa" uniqKey="Sugimoto N" first="Nagisa" last="Sugimoto">Nagisa Sugimoto</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Sugita, Mamoru" sort="Sugita, Mamoru" uniqKey="Sugita M" first="Mamoru" last="Sugita">Mamoru Sugita</name><affiliation><nlm:aff id="A29">Center for Gene Research, Nagoya University, Nagoya 464-8602, Japan</nlm:aff></affiliation></author><author><name sortKey="Sumikawa, Naomi" sort="Sumikawa, Naomi" uniqKey="Sumikawa N" first="Naomi" last="Sumikawa">Naomi Sumikawa</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Tanurdzic, Milos" sort="Tanurdzic, Milos" uniqKey="Tanurdzic M" first="Milos" last="Tanurdzic">Milos Tanurdzic</name><affiliation><nlm:aff id="A59">Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA</nlm:aff></affiliation></author><author><name sortKey="Thei En, Gunter" sort="Thei En, Gunter" uniqKey="Thei En G" first="Günter" last="Thei En">Günter Thei En</name><affiliation><nlm:aff id="A26">Department of Genetics, Friedrich Schiller University Jena, D-07743, Jena, Germany</nlm:aff></affiliation></author><author><name sortKey="Ulvskov, Peter" sort="Ulvskov, Peter" uniqKey="Ulvskov P" first="Peter" last="Ulvskov">Peter Ulvskov</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Wakazuki, Sachiko" sort="Wakazuki, Sachiko" uniqKey="Wakazuki S" first="Sachiko" last="Wakazuki">Sachiko Wakazuki</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Weng, Jing Ke" sort="Weng, Jing Ke" uniqKey="Weng J" first="Jing-Ke" last="Weng">Jing-Ke Weng</name><affiliation><nlm:aff id="A15">Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A60">The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA</nlm:aff></affiliation></author><author><name sortKey="Willats, William W G T" sort="Willats, William W G T" uniqKey="Willats W" first="William W. G. T." last="Willats">William W. G. T. Willats</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Wipf, Daniel" sort="Wipf, Daniel" uniqKey="Wipf D" first="Daniel" last="Wipf">Daniel Wipf</name><affiliation><nlm:aff id="A61">UMR INRA 1088/CNRS 5184, Université Bourgogne Plant-Microbe-Environment, Dijon 21065, France</nlm:aff></affiliation></author><author><name sortKey="Wolf, Paul G" sort="Wolf, Paul G" uniqKey="Wolf P" first="Paul G." last="Wolf">Paul G. Wolf</name><affiliation><nlm:aff id="A62">Department of Biology, Utah State University, Logan, UT 84322-5305, USA</nlm:aff></affiliation></author><author><name sortKey="Yang, Lixing" sort="Yang, Lixing" uniqKey="Yang L" first="Lixing" last="Yang">Lixing Yang</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Zimmer, Andreas D" sort="Zimmer, Andreas D" uniqKey="Zimmer A" first="Andreas D." last="Zimmer">Andreas D. Zimmer</name><affiliation><nlm:aff id="A48">Faculty of Biology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A63">Plant Biotechnology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation></author><author><name sortKey="Zhu, Qihui" sort="Zhu, Qihui" uniqKey="Zhu Q" first="Qihui" last="Zhu">Qihui Zhu</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Mitros, Therese" sort="Mitros, Therese" uniqKey="Mitros T" first="Therese" last="Mitros">Therese Mitros</name><affiliation><nlm:aff id="A64">Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation></author><author><name sortKey="Hellsten, Uffe" sort="Hellsten, Uffe" uniqKey="Hellsten U" first="Uffe" last="Hellsten">Uffe Hellsten</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Loque, Dominique" sort="Loque, Dominique" uniqKey="Loque D" first="Dominique" last="Loqué">Dominique Loqué</name><affiliation><nlm:aff id="A54">Joint BioEnergy Institute, Feedstocks Division, Emeryville, CA 94608, USA</nlm:aff></affiliation></author><author><name sortKey="Otillar, Robert" sort="Otillar, Robert" uniqKey="Otillar R" first="Robert" last="Otillar">Robert Otillar</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Schmutz, Jeremy" sort="Schmutz, Jeremy" uniqKey="Schmutz J" first="Jeremy" last="Schmutz">Jeremy Schmutz</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Shapiro, Harris" sort="Shapiro, Harris" uniqKey="Shapiro H" first="Harris" last="Shapiro">Harris Shapiro</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Lucas, Susan" sort="Lucas, Susan" uniqKey="Lucas S" first="Susan" last="Lucas">Susan Lucas</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Rokhsar, Daniel" sort="Rokhsar, Daniel" uniqKey="Rokhsar D" first="Daniel" last="Rokhsar">Daniel Rokhsar</name><affiliation><nlm:aff id="A64">Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V." last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21551031</idno><idno type="pmc">3166216</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166216</idno><idno type="RBID">PMC:3166216</idno><idno type="doi">10.1126/science.1203810</idno><date when="2011">2011</date><idno type="wicri:Area/Pmc/Corpus">001531</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001531</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants</title><author><name sortKey="Banks, Jo Ann" sort="Banks, Jo Ann" uniqKey="Banks J" first="Jo Ann" last="Banks">Jo Ann Banks</name><affiliation><nlm:aff id="A1">Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Nishiyama, Tomoaki" sort="Nishiyama, Tomoaki" uniqKey="Nishiyama T" first="Tomoaki" last="Nishiyama">Tomoaki Nishiyama</name><affiliation><nlm:aff id="A2">Advanced Science Research Center, Kanazawa University, Kanazawa, 920-0934 Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Hasebe, Mitsuyasu" sort="Hasebe, Mitsuyasu" uniqKey="Hasebe M" first="Mitsuyasu" last="Hasebe">Mitsuyasu Hasebe</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Bowman, John L" sort="Bowman, John L" uniqKey="Bowman J" first="John L." last="Bowman">John L. Bowman</name><affiliation><nlm:aff id="A6">School of Biological Sciences, Monash University, Clayton Campus, Melbourne, Victoria 3800, Australia</nlm:aff></affiliation><affiliation><nlm:aff id="A7">Section Plant Biology, University of California, Davis, CA 95616, USA</nlm:aff></affiliation></author><author><name sortKey="Gribskov, Michael" sort="Gribskov, Michael" uniqKey="Gribskov M" first="Michael" last="Gribskov">Michael Gribskov</name><affiliation><nlm:aff id="A8">Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Depamphilis, Claude" sort="Depamphilis, Claude" uniqKey="Depamphilis C" first="Claude" last="Depamphilis">Claude Depamphilis</name><affiliation><nlm:aff id="A9">Department of Biology and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, PA 16802, USA</nlm:aff></affiliation></author><author><name sortKey="Albert, Victor A" sort="Albert, Victor A" uniqKey="Albert V" first="Victor A." last="Albert">Victor A. Albert</name><affiliation><nlm:aff id="A10">Department of Biological Sciences, University at Buffalo, Buffalo, New York 14260</nlm:aff></affiliation></author><author><name sortKey="Aono, Naoki" sort="Aono, Naoki" uniqKey="Aono N" first="Naoki" last="Aono">Naoki Aono</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Aoyama, Tsuyoshi" sort="Aoyama, Tsuyoshi" uniqKey="Aoyama T" first="Tsuyoshi" last="Aoyama">Tsuyoshi Aoyama</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Ambrose, Barbara A" sort="Ambrose, Barbara A" uniqKey="Ambrose B" first="Barbara A." last="Ambrose">Barbara A. Ambrose</name><affiliation><nlm:aff id="A11">The New York Botanical Garden, Bronx, NY 10458, USA</nlm:aff></affiliation></author><author><name sortKey="Ashton, Neil W" sort="Ashton, Neil W" uniqKey="Ashton N" first="Neil W." last="Ashton">Neil W. Ashton</name><affiliation><nlm:aff id="A12">Department of Biology, University of Regina, 3737 Wascana Parkway, Regina, SK, S4S 0A2, Canada</nlm:aff></affiliation></author><author><name sortKey="Axtell, Michael J" sort="Axtell, Michael J" uniqKey="Axtell M" first="Michael J." last="Axtell">Michael J. Axtell</name><affiliation><nlm:aff id="A9">Department of Biology and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, PA 16802, USA</nlm:aff></affiliation></author><author><name sortKey="Barker, Elizabeth" sort="Barker, Elizabeth" uniqKey="Barker E" first="Elizabeth" last="Barker">Elizabeth Barker</name><affiliation><nlm:aff id="A12">Department of Biology, University of Regina, 3737 Wascana Parkway, Regina, SK, S4S 0A2, Canada</nlm:aff></affiliation></author><author><name sortKey="Barker, Michael S" sort="Barker, Michael S" uniqKey="Barker M" first="Michael S." last="Barker">Michael S. Barker</name><affiliation><nlm:aff id="A13">Department of Ecology & Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA</nlm:aff></affiliation></author><author><name sortKey="Bennetzen, Jeffrey L" sort="Bennetzen, Jeffrey L" uniqKey="Bennetzen J" first="Jeffrey L." last="Bennetzen">Jeffrey L. Bennetzen</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Bonawitz, Nicholas D" sort="Bonawitz, Nicholas D" uniqKey="Bonawitz N" first="Nicholas D." last="Bonawitz">Nicholas D. Bonawitz</name><affiliation><nlm:aff id="A15">Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Chapple, Clint" sort="Chapple, Clint" uniqKey="Chapple C" first="Clint" last="Chapple">Clint Chapple</name><affiliation><nlm:aff id="A15">Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Cheng, Chaoyang" sort="Cheng, Chaoyang" uniqKey="Cheng C" first="Chaoyang" last="Cheng">Chaoyang Cheng</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Correa, Luiz Gustavo Guedes" sort="Correa, Luiz Gustavo Guedes" uniqKey="Correa L" first="Luiz Gustavo Guedes" last="Correa">Luiz Gustavo Guedes Correa</name><affiliation><nlm:aff id="A16">Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</nlm:aff></affiliation></author><author><name sortKey="Dacre, Michael" sort="Dacre, Michael" uniqKey="Dacre M" first="Michael" last="Dacre">Michael Dacre</name><affiliation><nlm:aff id="A17">Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies 10010 North Torrey Pines Rd, La Jolla, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Debarry, Jeremy" sort="Debarry, Jeremy" uniqKey="Debarry J" first="Jeremy" last="Debarry">Jeremy Debarry</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Dreyer, Ingo" sort="Dreyer, Ingo" uniqKey="Dreyer I" first="Ingo" last="Dreyer">Ingo Dreyer</name><affiliation><nlm:aff id="A18">Heisenberg-Group BPMPB, University of Potsdam, 14476 Potsdam-Golm, Germany</nlm:aff></affiliation></author><author><name sortKey="Elias, Marek" sort="Elias, Marek" uniqKey="Elias M" first="Marek" last="Elias">Marek Elias</name><affiliation><nlm:aff id="A19">Faculty of Science, Department of Botany, Charles University in Prague, 128 01 Prague, Benatska 2, Czech Republic</nlm:aff></affiliation></author><author><name sortKey="Engstrom, Eric M" sort="Engstrom, Eric M" uniqKey="Engstrom E" first="Eric M." last="Engstrom">Eric M. Engstrom</name><affiliation><nlm:aff id="A20">Department of Biology, The College of William and Mary, Williamsburg, VA 23187, USA</nlm:aff></affiliation></author><author><name sortKey="Estelle, Mark" sort="Estelle, Mark" uniqKey="Estelle M" first="Mark" last="Estelle">Mark Estelle</name><affiliation><nlm:aff id="A21">Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093, USA</nlm:aff></affiliation></author><author><name sortKey="Feng, Liang" sort="Feng, Liang" uniqKey="Feng L" first="Liang" last="Feng">Liang Feng</name><affiliation><nlm:aff id="A22">Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Finet, Cedric" sort="Finet, Cedric" uniqKey="Finet C" first="Cédric" last="Finet">Cédric Finet</name><affiliation><nlm:aff id="A23">Laboratoire de Reproduction et Développement des Plantes, Ecole Normale Supérieurede Lyon, Lyon F-69364, France</nlm:aff></affiliation></author><author><name sortKey="Floyd, Sandra K" sort="Floyd, Sandra K" uniqKey="Floyd S" first="Sandra K." last="Floyd">Sandra K. Floyd</name><affiliation><nlm:aff id="A6">School of Biological Sciences, Monash University, Clayton Campus, Melbourne, Victoria 3800, Australia</nlm:aff></affiliation></author><author><name sortKey="Frommer, Wolf B" sort="Frommer, Wolf B" uniqKey="Frommer W" first="Wolf B." last="Frommer">Wolf B. Frommer</name><affiliation><nlm:aff id="A24">Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA</nlm:aff></affiliation></author><author><name sortKey="Fujita, Tomomichi" sort="Fujita, Tomomichi" uniqKey="Fujita T" first="Tomomichi" last="Fujita">Tomomichi Fujita</name><affiliation><nlm:aff id="A25">Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan</nlm:aff></affiliation></author><author><name sortKey="Gramzow, Lydia" sort="Gramzow, Lydia" uniqKey="Gramzow L" first="Lydia" last="Gramzow">Lydia Gramzow</name><affiliation><nlm:aff id="A26">Department of Genetics, Friedrich Schiller University Jena, D-07743, Jena, Germany</nlm:aff></affiliation></author><author><name sortKey="Gutensohn, Michael" sort="Gutensohn, Michael" uniqKey="Gutensohn M" first="Michael" last="Gutensohn">Michael Gutensohn</name><affiliation><nlm:aff id="A27">Department of Horticulture and Landscape Architecture, Purdue University, W. Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Harholt, Jesper" sort="Harholt, Jesper" uniqKey="Harholt J" first="Jesper" last="Harholt">Jesper Harholt</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Hattori, Mitsuru" sort="Hattori, Mitsuru" uniqKey="Hattori M" first="Mitsuru" last="Hattori">Mitsuru Hattori</name><affiliation><nlm:aff id="A29">Center for Gene Research, Nagoya University, Nagoya 464-8602, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A30">Department of Chemistry, School of Science, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan</nlm:aff></affiliation></author><author><name sortKey="Heyl, Alexander" sort="Heyl, Alexander" uniqKey="Heyl A" first="Alexander" last="Heyl">Alexander Heyl</name><affiliation><nlm:aff id="A31">Institute for Biology/Applied Genetics/DCPS, Freie Universität Berlin, 14195 Berlin, Germany</nlm:aff></affiliation></author><author><name sortKey="Hirai, Tadayoshi" sort="Hirai, Tadayoshi" uniqKey="Hirai T" first="Tadayoshi" last="Hirai">Tadayoshi Hirai</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A32">Graduate School of Life and Environmental Sciences, Gene Research Center, University of Tsukuba, Tsukuba 305-8572, Japan</nlm:aff></affiliation></author><author><name sortKey="Hiwatashi, Yuji" sort="Hiwatashi, Yuji" uniqKey="Hiwatashi Y" first="Yuji" last="Hiwatashi">Yuji Hiwatashi</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Ishikawa, Masaki" sort="Ishikawa, Masaki" uniqKey="Ishikawa M" first="Masaki" last="Ishikawa">Masaki Ishikawa</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Iwata, Mineko" sort="Iwata, Mineko" uniqKey="Iwata M" first="Mineko" last="Iwata">Mineko Iwata</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Karol, Kenneth G" sort="Karol, Kenneth G" uniqKey="Karol K" first="Kenneth G." last="Karol">Kenneth G. Karol</name><affiliation><nlm:aff id="A33">The New York Botanical Garden, Bronx, NY 10458-5126, USA</nlm:aff></affiliation></author><author><name sortKey="Koehler, Barbara" sort="Koehler, Barbara" uniqKey="Koehler B" first="Barbara" last="Koehler">Barbara Koehler</name><affiliation><nlm:aff id="A16">Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</nlm:aff></affiliation></author><author><name sortKey="Kolukisaoglu, Uener" sort="Kolukisaoglu, Uener" uniqKey="Kolukisaoglu U" first="Uener" last="Kolukisaoglu">Uener Kolukisaoglu</name><affiliation><nlm:aff id="A34">Center for Life Science Automation, University of Rostock, D–18119 Rostock, Germany</nlm:aff></affiliation></author><author><name sortKey="Kubo, Minoru" sort="Kubo, Minoru" uniqKey="Kubo M" first="Minoru" last="Kubo">Minoru Kubo</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Kurata, Tetsuya" sort="Kurata, Tetsuya" uniqKey="Kurata T" first="Tetsuya" last="Kurata">Tetsuya Kurata</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A35">Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan</nlm:aff></affiliation></author><author><name sortKey="Lalonde, Sylvie" sort="Lalonde, Sylvie" uniqKey="Lalonde S" first="Sylvie" last="Lalonde">Sylvie Lalonde</name><affiliation><nlm:aff id="A24">Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA</nlm:aff></affiliation></author><author><name sortKey="Li, Kejie" sort="Li, Kejie" uniqKey="Li K" first="Kejie" last="Li">Kejie Li</name><affiliation><nlm:aff id="A8">Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name><affiliation><nlm:aff id="A8">Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A36">Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA</nlm:aff></affiliation></author><author><name sortKey="Litt, Amy" sort="Litt, Amy" uniqKey="Litt A" first="Amy" last="Litt">Amy Litt</name><affiliation><nlm:aff id="A33">The New York Botanical Garden, Bronx, NY 10458-5126, USA</nlm:aff></affiliation></author><author><name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name><affiliation><nlm:aff id="A37">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation></author><author><name sortKey="Manning, Gerard" sort="Manning, Gerard" uniqKey="Manning G" first="Gerard" last="Manning">Gerard Manning</name><affiliation><nlm:aff id="A17">Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies 10010 North Torrey Pines Rd, La Jolla, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Maruyama, Takeshi" sort="Maruyama, Takeshi" uniqKey="Maruyama T" first="Takeshi" last="Maruyama">Takeshi Maruyama</name><affiliation><nlm:aff id="A38">Graduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan</nlm:aff></affiliation></author><author><name sortKey="Michael, Todd P" sort="Michael, Todd P" uniqKey="Michael T" first="Todd P." last="Michael">Todd P. Michael</name><affiliation><nlm:aff id="A39">Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey and Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA</nlm:aff></affiliation></author><author><name sortKey="Mikami, Koji" sort="Mikami, Koji" uniqKey="Mikami K" first="Koji" last="Mikami">Koji Mikami</name><affiliation><nlm:aff id="A40">Faculty of Fisheries Sciences, Hokkaido University, Hakodate 041-8611, Japan</nlm:aff></affiliation></author><author><name sortKey="Miyazaki, Saori" sort="Miyazaki, Saori" uniqKey="Miyazaki S" first="Saori" last="Miyazaki">Saori Miyazaki</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A41">National Institute of Genetics, Mishima 411-8540 Japan</nlm:aff></affiliation></author><author><name sortKey="Morinaga, Shin Ichi" sort="Morinaga, Shin Ichi" uniqKey="Morinaga S" first="Shin-Ichi" last="Morinaga">Shin-Ichi Morinaga</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A42">Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan</nlm:aff></affiliation></author><author><name sortKey="Murata, Takashi" sort="Murata, Takashi" uniqKey="Murata T" first="Takashi" last="Murata">Takashi Murata</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Mueller Roeber, Bernd" sort="Mueller Roeber, Bernd" uniqKey="Mueller Roeber B" first="Bernd" last="Mueller-Roeber">Bernd Mueller-Roeber</name><affiliation><nlm:aff id="A16">Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</nlm:aff></affiliation></author><author><name sortKey="Nelson, David R" sort="Nelson, David R" uniqKey="Nelson D" first="David R." last="Nelson">David R. Nelson</name><affiliation><nlm:aff id="A43">Department of Microbiology, Immunology and Biochemistry, University of Tennessee, Memphis, TN 38163, USA</nlm:aff></affiliation></author><author><name sortKey="Obara, Mari" sort="Obara, Mari" uniqKey="Obara M" first="Mari" last="Obara">Mari Obara</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A44">Japan Science and Technology Agency, Sapporo 060-0819, Japan</nlm:aff></affiliation></author><author><name sortKey="Oguri, Yasuko" sort="Oguri, Yasuko" uniqKey="Oguri Y" first="Yasuko" last="Oguri">Yasuko Oguri</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Olmstead, Richard G" sort="Olmstead, Richard G" uniqKey="Olmstead R" first="Richard G." last="Olmstead">Richard G. Olmstead</name><affiliation><nlm:aff id="A45">Department of Biology, University of Washington, Seattle, WA 98195-5325, USA</nlm:aff></affiliation></author><author><name sortKey="Onodera, Naoko" sort="Onodera, Naoko" uniqKey="Onodera N" first="Naoko" last="Onodera">Naoko Onodera</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A46">Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada</nlm:aff></affiliation></author><author><name sortKey="Petersen, Bent Larsen" sort="Petersen, Bent Larsen" uniqKey="Petersen B" first="Bent Larsen" last="Petersen">Bent Larsen Petersen</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Pils, Birgit" sort="Pils, Birgit" uniqKey="Pils B" first="Birgit" last="Pils">Birgit Pils</name><affiliation><nlm:aff id="A47">Hamilton Bonaduz AG, Bonaduz 7402, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Prigge, Michael" sort="Prigge, Michael" uniqKey="Prigge M" first="Michael" last="Prigge">Michael Prigge</name><affiliation><nlm:aff id="A21">Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093, USA</nlm:aff></affiliation></author><author><name sortKey="Rensing, Stefan A" sort="Rensing, Stefan A" uniqKey="Rensing S" first="Stefan A." last="Rensing">Stefan A. Rensing</name><affiliation><nlm:aff id="A48">Faculty of Biology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A49">BIOSS Centre for Biological Signaling Studies, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A50">FRISYS Freiburg Initiative for Systems Biology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation></author><author><name sortKey="Ria O Pach N, Diego Mauricio" sort="Ria O Pach N, Diego Mauricio" uniqKey="Ria O Pach N D" first="Diego Mauricio" last="Ria O-Pach N">Diego Mauricio Ria O-Pach N</name><affiliation><nlm:aff id="A51">GabiPD team, Bioinformatics Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A52">Group of Computational and Evolutionary Biology, Biological Sciences Department, Universidad de los Andes, Bogotá D.C., Colombia</nlm:aff></affiliation></author><author><name sortKey="Roberts, Alison W" sort="Roberts, Alison W" uniqKey="Roberts A" first="Alison W." last="Roberts">Alison W. Roberts</name><affiliation><nlm:aff id="A53">Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA</nlm:aff></affiliation></author><author><name sortKey="Sato, Yoshikatsu" sort="Sato, Yoshikatsu" uniqKey="Sato Y" first="Yoshikatsu" last="Sato">Yoshikatsu Sato</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Scheller, Henrik Vibe" sort="Scheller, Henrik Vibe" uniqKey="Scheller H" first="Henrik Vibe" last="Scheller">Henrik Vibe Scheller</name><affiliation><nlm:aff id="A37">Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A54">Joint BioEnergy Institute, Feedstocks Division, Emeryville, CA 94608, USA</nlm:aff></affiliation></author><author><name sortKey="Schulz, Burkhard" sort="Schulz, Burkhard" uniqKey="Schulz B" first="Burkhard" last="Schulz">Burkhard Schulz</name><affiliation><nlm:aff id="A27">Department of Horticulture and Landscape Architecture, Purdue University, W. Lafayette, IN 47907, USA</nlm:aff></affiliation></author><author><name sortKey="Schulz, Christian" sort="Schulz, Christian" uniqKey="Schulz C" first="Christian" last="Schulz">Christian Schulz</name><affiliation><nlm:aff id="A55">Department of Evolution and Biodiversity of Plants, Ruhr-University Bochum, Bochum 44780, Germany</nlm:aff></affiliation></author><author><name sortKey="Shakirov, Eugene V" sort="Shakirov, Eugene V" uniqKey="Shakirov E" first="Eugene V." last="Shakirov">Eugene V. Shakirov</name><affiliation><nlm:aff id="A56">Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA</nlm:aff></affiliation></author><author><name sortKey="Shibagaki, Nakako" sort="Shibagaki, Nakako" uniqKey="Shibagaki N" first="Nakako" last="Shibagaki">Nakako Shibagaki</name><affiliation><nlm:aff id="A57">Graduate School of Engineering, Osaka University, Osaka 565-0871, Japan</nlm:aff></affiliation></author><author><name sortKey="Shinohara, Naoki" sort="Shinohara, Naoki" uniqKey="Shinohara N" first="Naoki" last="Shinohara">Naoki Shinohara</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Shippen, Dorothy E" sort="Shippen, Dorothy E" uniqKey="Shippen D" first="Dorothy E." last="Shippen">Dorothy E. Shippen</name><affiliation><nlm:aff id="A56">Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA</nlm:aff></affiliation></author><author><name sortKey="S Rensen, Iben" sort="S Rensen, Iben" uniqKey="S Rensen I" first="Iben" last="S Rensen">Iben S Rensen</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Sotooka, Ryo" sort="Sotooka, Ryo" uniqKey="Sotooka R" first="Ryo" last="Sotooka">Ryo Sotooka</name><affiliation><nlm:aff id="A58">School of Science, Hokkaido University, Sapporo 060-0810, Japan</nlm:aff></affiliation></author><author><name sortKey="Sugimoto, Nagisa" sort="Sugimoto, Nagisa" uniqKey="Sugimoto N" first="Nagisa" last="Sugimoto">Nagisa Sugimoto</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Sugita, Mamoru" sort="Sugita, Mamoru" uniqKey="Sugita M" first="Mamoru" last="Sugita">Mamoru Sugita</name><affiliation><nlm:aff id="A29">Center for Gene Research, Nagoya University, Nagoya 464-8602, Japan</nlm:aff></affiliation></author><author><name sortKey="Sumikawa, Naomi" sort="Sumikawa, Naomi" uniqKey="Sumikawa N" first="Naomi" last="Sumikawa">Naomi Sumikawa</name><affiliation><nlm:aff id="A4">National Institute for Basic Biology, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Tanurdzic, Milos" sort="Tanurdzic, Milos" uniqKey="Tanurdzic M" first="Milos" last="Tanurdzic">Milos Tanurdzic</name><affiliation><nlm:aff id="A59">Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA</nlm:aff></affiliation></author><author><name sortKey="Thei En, Gunter" sort="Thei En, Gunter" uniqKey="Thei En G" first="Günter" last="Thei En">Günter Thei En</name><affiliation><nlm:aff id="A26">Department of Genetics, Friedrich Schiller University Jena, D-07743, Jena, Germany</nlm:aff></affiliation></author><author><name sortKey="Ulvskov, Peter" sort="Ulvskov, Peter" uniqKey="Ulvskov P" first="Peter" last="Ulvskov">Peter Ulvskov</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Wakazuki, Sachiko" sort="Wakazuki, Sachiko" uniqKey="Wakazuki S" first="Sachiko" last="Wakazuki">Sachiko Wakazuki</name><affiliation><nlm:aff id="A3">ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</nlm:aff></affiliation></author><author><name sortKey="Weng, Jing Ke" sort="Weng, Jing Ke" uniqKey="Weng J" first="Jing-Ke" last="Weng">Jing-Ke Weng</name><affiliation><nlm:aff id="A15">Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A60">The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA</nlm:aff></affiliation></author><author><name sortKey="Willats, William W G T" sort="Willats, William W G T" uniqKey="Willats W" first="William W. G. T." last="Willats">William W. G. T. Willats</name><affiliation><nlm:aff id="A28">Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</nlm:aff></affiliation></author><author><name sortKey="Wipf, Daniel" sort="Wipf, Daniel" uniqKey="Wipf D" first="Daniel" last="Wipf">Daniel Wipf</name><affiliation><nlm:aff id="A61">UMR INRA 1088/CNRS 5184, Université Bourgogne Plant-Microbe-Environment, Dijon 21065, France</nlm:aff></affiliation></author><author><name sortKey="Wolf, Paul G" sort="Wolf, Paul G" uniqKey="Wolf P" first="Paul G." last="Wolf">Paul G. Wolf</name><affiliation><nlm:aff id="A62">Department of Biology, Utah State University, Logan, UT 84322-5305, USA</nlm:aff></affiliation></author><author><name sortKey="Yang, Lixing" sort="Yang, Lixing" uniqKey="Yang L" first="Lixing" last="Yang">Lixing Yang</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Zimmer, Andreas D" sort="Zimmer, Andreas D" uniqKey="Zimmer A" first="Andreas D." last="Zimmer">Andreas D. Zimmer</name><affiliation><nlm:aff id="A48">Faculty of Biology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation><affiliation><nlm:aff id="A63">Plant Biotechnology, University of Freiburg, Freiburg 79104, Germany</nlm:aff></affiliation></author><author><name sortKey="Zhu, Qihui" sort="Zhu, Qihui" uniqKey="Zhu Q" first="Qihui" last="Zhu">Qihui Zhu</name><affiliation><nlm:aff id="A14">Department of Genetics, University of Georgia, Athens, GA 30602, USA</nlm:aff></affiliation></author><author><name sortKey="Mitros, Therese" sort="Mitros, Therese" uniqKey="Mitros T" first="Therese" last="Mitros">Therese Mitros</name><affiliation><nlm:aff id="A64">Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation></author><author><name sortKey="Hellsten, Uffe" sort="Hellsten, Uffe" uniqKey="Hellsten U" first="Uffe" last="Hellsten">Uffe Hellsten</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Loque, Dominique" sort="Loque, Dominique" uniqKey="Loque D" first="Dominique" last="Loqué">Dominique Loqué</name><affiliation><nlm:aff id="A54">Joint BioEnergy Institute, Feedstocks Division, Emeryville, CA 94608, USA</nlm:aff></affiliation></author><author><name sortKey="Otillar, Robert" sort="Otillar, Robert" uniqKey="Otillar R" first="Robert" last="Otillar">Robert Otillar</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Schmutz, Jeremy" sort="Schmutz, Jeremy" uniqKey="Schmutz J" first="Jeremy" last="Schmutz">Jeremy Schmutz</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Shapiro, Harris" sort="Shapiro, Harris" uniqKey="Shapiro H" first="Harris" last="Shapiro">Harris Shapiro</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Lucas, Susan" sort="Lucas, Susan" uniqKey="Lucas S" first="Susan" last="Lucas">Susan Lucas</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Rokhsar, Daniel" sort="Rokhsar, Daniel" uniqKey="Rokhsar D" first="Daniel" last="Rokhsar">Daniel Rokhsar</name><affiliation><nlm:aff id="A64">Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V." last="Grigoriev">Igor V. Grigoriev</name><affiliation><nlm:aff id="A65">US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</nlm:aff></affiliation></author></analytic><series><title level="j">Science (New York, N.Y.)</title><idno type="ISSN">0036-8075</idno><idno type="eISSN">1095-9203</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">Vascular plants appeared ~410 million years ago then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes (<xref ref-type="bibr" rid="R1">1</xref>). We report here the genome sequence of the lycophyte <italic>Selaginella moellendorffii</italic> (Selaginella), the first non-seed vascular plant genome reported. By comparing gene content in evolutionary diverse taxa, we found that the transition from a gametophyte- to sporophyte-dominated life cycle required far fewer new genes than the transition from a non-seed vascular to a flowering plant, while secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in post-transcriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the tasiRNA pathway and extensive RNA editing of organellar genes.</p></div></front></TEI><pmc article-type="research-article" xml:lang="en"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">0404511</journal-id><journal-id journal-id-type="pubmed-jr-id">7473</journal-id><journal-id journal-id-type="nlm-ta">Science</journal-id><journal-title-group><journal-title>Science (New York, N.Y.)</journal-title></journal-title-group><issn pub-type="ppub">0036-8075</issn><issn pub-type="epub">1095-9203</issn></journal-meta><article-meta><article-id pub-id-type="pmid">21551031</article-id><article-id pub-id-type="pmc">3166216</article-id><article-id pub-id-type="doi">10.1126/science.1203810</article-id><article-id pub-id-type="manuscript">NIHMS300873</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants</article-title></title-group><contrib-group><contrib 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contrib-type="author"><name><surname>Rokhsar</surname><given-names>Daniel</given-names></name><xref rid="A64" ref-type="aff">64</xref><xref rid="A65" ref-type="aff">65</xref></contrib><contrib contrib-type="author"><name><surname>Grigoriev</surname><given-names>Igor V.</given-names></name><xref rid="A65" ref-type="aff">65</xref></contrib></contrib-group><aff id="A1"><label>1</label>Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA</aff><aff id="A2"><label>2</label>Advanced Science Research Center, Kanazawa University, Kanazawa, 920-0934 Japan</aff><aff id="A3"><label>3</label>ERATO, Japan Science and Technology Agency, Okazaki 444-8585, Japan</aff><aff id="A4"><label>4</label>National Institute for Basic Biology, Okazaki 444-8585, Japan</aff><aff id="A5"><label>5</label>Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444-8585, Japan</aff><aff id="A6"><label>6</label>School of Biological Sciences, Monash University, Clayton Campus, Melbourne, Victoria 3800, Australia</aff><aff id="A7"><label>7</label>Section Plant Biology, University of California, Davis, CA 95616, USA</aff><aff id="A8"><label>8</label>Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA</aff><aff id="A9"><label>9</label>Department of Biology and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, PA 16802, USA</aff><aff id="A10"><label>10</label>Department of Biological Sciences, University at Buffalo, Buffalo, New York 14260</aff><aff id="A11"><label>11</label>The New York Botanical Garden, Bronx, NY 10458, USA</aff><aff id="A12"><label>12</label>Department of Biology, University of Regina, 3737 Wascana Parkway, Regina, SK, S4S 0A2, Canada</aff><aff id="A13"><label>13</label>Department of Ecology & Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA</aff><aff id="A14"><label>14</label>Department of Genetics, University of Georgia, Athens, GA 30602, USA</aff><aff id="A15"><label>15</label>Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA</aff><aff id="A16"><label>16</label>Department of Molecular Biology, University of Potsdam, Potsdam-Golm 14476, Germany</aff><aff id="A17"><label>17</label>Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies 10010 North Torrey Pines Rd, La Jolla, CA, USA</aff><aff id="A18"><label>18</label>Heisenberg-Group BPMPB, University of Potsdam, 14476 Potsdam-Golm, Germany</aff><aff id="A19"><label>19</label>Faculty of Science, Department of Botany, Charles University in Prague, 128 01 Prague, Benatska 2, Czech Republic</aff><aff id="A20"><label>20</label>Department of Biology, The College of William and Mary, Williamsburg, VA 23187, USA</aff><aff id="A21"><label>21</label>Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093, USA</aff><aff id="A22"><label>22</label>Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA</aff><aff id="A23"><label>23</label>Laboratoire de Reproduction et Développement des Plantes, Ecole Normale Supérieurede Lyon, Lyon F-69364, France</aff><aff id="A24"><label>24</label>Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA</aff><aff id="A25"><label>25</label>Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan</aff><aff id="A26"><label>26</label>Department of Genetics, Friedrich Schiller University Jena, D-07743, Jena, Germany</aff><aff id="A27"><label>27</label>Department of Horticulture and Landscape Architecture, Purdue University, W. Lafayette, IN 47907, USA</aff><aff id="A28"><label>28</label>Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark</aff><aff id="A29"><label>29</label>Center for Gene Research, Nagoya University, Nagoya 464-8602, Japan</aff><aff id="A30"><label>30</label>Department of Chemistry, School of Science, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan</aff><aff id="A31"><label>31</label>Institute for Biology/Applied Genetics/DCPS, Freie Universität Berlin, 14195 Berlin, Germany</aff><aff id="A32"><label>32</label>Graduate School of Life and Environmental Sciences, Gene Research Center, University of Tsukuba, Tsukuba 305-8572, Japan</aff><aff id="A33"><label>33</label>The New York Botanical Garden, Bronx, NY 10458-5126, USA</aff><aff id="A34"><label>34</label>Center for Life Science Automation, University of Rostock, D–18119 Rostock, Germany</aff><aff id="A35"><label>35</label>Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan</aff><aff id="A36"><label>36</label>Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA</aff><aff id="A37"><label>37</label>Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA</aff><aff id="A38"><label>38</label>Graduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan</aff><aff id="A39"><label>39</label>Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey and Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA</aff><aff id="A40"><label>40</label>Faculty of Fisheries Sciences, Hokkaido University, Hakodate 041-8611, Japan</aff><aff id="A41"><label>41</label>National Institute of Genetics, Mishima 411-8540 Japan</aff><aff id="A42"><label>42</label>Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan</aff><aff id="A43"><label>43</label>Department of Microbiology, Immunology and Biochemistry, University of Tennessee, Memphis, TN 38163, USA</aff><aff id="A44"><label>44</label>Japan Science and Technology Agency, Sapporo 060-0819, Japan</aff><aff id="A45"><label>45</label>Department of Biology, University of Washington, Seattle, WA 98195-5325, USA</aff><aff id="A46"><label>46</label>Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada</aff><aff id="A47"><label>47</label>Hamilton Bonaduz AG, Bonaduz 7402, Switzerland</aff><aff id="A48"><label>48</label>Faculty of Biology, University of Freiburg, Freiburg 79104, Germany</aff><aff id="A49"><label>49</label>BIOSS Centre for Biological Signaling Studies, University of Freiburg, Freiburg 79104, Germany</aff><aff id="A50"><label>50</label>FRISYS Freiburg Initiative for Systems Biology, University of Freiburg, Freiburg 79104, Germany</aff><aff id="A51"><label>51</label>GabiPD team, Bioinformatics Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany</aff><aff id="A52"><label>52</label>Group of Computational and Evolutionary Biology, Biological Sciences Department, Universidad de los Andes, Bogotá D.C., Colombia</aff><aff id="A53"><label>53</label>Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA</aff><aff id="A54"><label>54</label>Joint BioEnergy Institute, Feedstocks Division, Emeryville, CA 94608, USA</aff><aff id="A55"><label>55</label>Department of Evolution and Biodiversity of Plants, Ruhr-University Bochum, Bochum 44780, Germany</aff><aff id="A56"><label>56</label>Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA</aff><aff id="A57"><label>57</label>Graduate School of Engineering, Osaka University, Osaka 565-0871, Japan</aff><aff id="A58"><label>58</label>School of Science, Hokkaido University, Sapporo 060-0810, Japan</aff><aff id="A59"><label>59</label>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA</aff><aff id="A60"><label>60</label>The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA</aff><aff id="A61"><label>61</label>UMR INRA 1088/CNRS 5184, Université Bourgogne Plant-Microbe-Environment, Dijon 21065, France</aff><aff id="A62"><label>62</label>Department of Biology, Utah State University, Logan, UT 84322-5305, USA</aff><aff id="A63"><label>63</label>Plant Biotechnology, University of Freiburg, Freiburg 79104, Germany</aff><aff id="A64"><label>64</label>Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA</aff><aff id="A65"><label>65</label>US Department of Energy Joint Genome Institute, Walnut Creek Ca 94598, USA</aff><pub-date pub-type="nihms-submitted"><day>18</day><month>8</month><year>2011</year></pub-date><pub-date pub-type="epub"><day>5</day><month>5</month><year>2011</year></pub-date><pub-date pub-type="ppub"><day>20</day><month>5</month><year>2011</year></pub-date><pub-date pub-type="pmc-release"><day>20</day><month>11</month><year>2011</year></pub-date><volume>332</volume><issue>6032</issue><fpage>960</fpage><lpage>963</lpage><abstract><p id="P1">Vascular plants appeared ~410 million years ago then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes (<xref ref-type="bibr" rid="R1">1</xref>). We report here the genome sequence of the lycophyte <italic>Selaginella moellendorffii</italic> (Selaginella), the first non-seed vascular plant genome reported. By comparing gene content in evolutionary diverse taxa, we found that the transition from a gametophyte- to sporophyte-dominated life cycle required far fewer new genes than the transition from a non-seed vascular to a flowering plant, while secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in post-transcriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the tasiRNA pathway and extensive RNA editing of organellar genes.</p></abstract><funding-group><award-group><funding-source country="United States">National Human Genome Research Institute : NHGRI</funding-source><award-id>R01 HG004164-04 || HG</award-id></award-group><award-group><funding-source country="United States">National Human Genome Research Institute : NHGRI</funding-source><award-id>R01 HG004164-03 || HG</award-id></award-group><award-group><funding-source country="United States">National Human Genome Research Institute : NHGRI</funding-source><award-id>R01 HG004164-02 || HG</award-id></award-group></funding-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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