Sequence-Based Analysis of Translocations and Inversions in Bread Wheat (Triticum aestivum L.)
Identifieur interne : 001888 ( Pmc/Checkpoint ); précédent : 001887; suivant : 001889Sequence-Based Analysis of Translocations and Inversions in Bread Wheat (Triticum aestivum L.)
Auteurs : Jian Ma [Australie, République populaire de Chine] ; Jiri Stiller [Australie] ; Paul J. Berkman [Australie] ; Yuming Wei [République populaire de Chine] ; Jan Rogers [Royaume-Uni] ; Catherine Feuillet [France] ; Jaroslav Dolezel [République tchèque] ; Klaus F. Mayer [Allemagne] ; Kellye Eversole [États-Unis] ; You-Liang Zheng [République populaire de Chine] ; Chunji Liu [Australie]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
Structural changes of chromosomes are a primary mechanism of genome rearrangement over the course of evolution and detailed knowledge of such changes in a given species and its close relatives should increase the efficiency and precision of chromosome engineering in crop improvement. We have identified sequences bordering each of the main translocation and inversion breakpoints on chromosomes 4A, 5A and 7B of the modern bread wheat genome. The locations of these breakpoints allow, for the first time, a detailed description of the evolutionary origins of these chromosomes at the gene level. Results from this study also demonstrate that, although the strategy of exploiting sorted chromosome arms has dramatically simplified the efforts of wheat genome sequencing, simultaneous analysis of sequences from homoeologous and non-homoeologous chromosomes is essential in understanding the origins of DNA sequences in polyploid species.
Url:
DOI: 10.1371/journal.pone.0079329
PubMed: 24260197
PubMed Central: 3829836
Affiliations:
- Allemagne, Australie, France, Royaume-Uni, République populaire de Chine, République tchèque, États-Unis
- Auvergne (région administrative), Auvergne-Rhône-Alpes, Maryland
- Clermont-Ferrand
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PMC:3829836Le document en format XML
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Berkman</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Commonwealth Scientific and Industrial Research Organisation (CSIRO) Plant Industry, St Lucia, Brisbane, Queensland, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Commonwealth Scientific and Industrial Research Organisation (CSIRO) Plant Industry, St Lucia, Brisbane, Queensland</wicri:regionArea><wicri:noRegion>Queensland</wicri:noRegion></affiliation></author><author><name sortKey="Wei, Yuming" sort="Wei, Yuming" uniqKey="Wei Y" first="Yuming" last="Wei">Yuming Wei</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu</wicri:regionArea><wicri:noRegion>Chengdu</wicri:noRegion></affiliation></author><author><name sortKey="Rogers, Jan" sort="Rogers, Jan" uniqKey="Rogers J" first="Jan" last="Rogers">Jan Rogers</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>The Genome Analysis Centre and International Wheat Genome Sequencing Consortium, Norwich Research Park, Norwich, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Genome Analysis Centre and International Wheat Genome Sequencing Consortium, Norwich Research Park, Norwich</wicri:regionArea><wicri:noRegion>Norwich</wicri:noRegion></affiliation></author><author><name sortKey="Feuillet, Catherine" sort="Feuillet, Catherine" uniqKey="Feuillet C" first="Catherine" last="Feuillet">Catherine Feuillet</name><affiliation wicri:level="3"><nlm:aff id="aff4"><addr-line>Institute National de Researche Agronomieque (INRA) - University Blaise Pascal, Genetics, Diversity and Ecophysiology of Cereals, Domaine de Crouelle, Clermont Ferrand, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institute National de Researche Agronomieque (INRA) - University Blaise Pascal, Genetics, Diversity and Ecophysiology of Cereals, Domaine de Crouelle, Clermont Ferrand</wicri:regionArea><placeName><region type="region">Auvergne-Rhône-Alpes</region><region type="old region">Auvergne (région administrative)</region><settlement type="city">Clermont-Ferrand</settlement></placeName></affiliation></author><author><name sortKey="Dolezel, Jaroslav" sort="Dolezel, Jaroslav" uniqKey="Dolezel J" first="Jaroslav" last="Dolezel">Jaroslav Dolezel</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Centre of the Region Hana for Biotechnological and Agricultural Research, Institute of Experimental Botany, Olomouc-Holice, Czech Republic</addr-line></nlm:aff><country xml:lang="fr">République tchèque</country><wicri:regionArea>Centre of the Region Hana for Biotechnological and Agricultural Research, Institute of Experimental Botany, Olomouc-Holice</wicri:regionArea><wicri:noRegion>Olomouc-Holice</wicri:noRegion></affiliation></author><author><name sortKey="Mayer, Klaus F" sort="Mayer, Klaus F" uniqKey="Mayer K" first="Klaus F." last="Mayer">Klaus F. Mayer</name><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Helmholtz Center Munich, German research Center for Environment and Health, Neuherberg, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Helmholtz Center Munich, German research Center for Environment and Health, Neuherberg</wicri:regionArea><wicri:noRegion>Neuherberg</wicri:noRegion><wicri:noRegion>Neuherberg</wicri:noRegion><wicri:noRegion>Neuherberg</wicri:noRegion></affiliation></author><author><name sortKey="Eversole, Kellye" sort="Eversole, Kellye" uniqKey="Eversole K" first="Kellye" last="Eversole">Kellye Eversole</name><affiliation wicri:level="2"><nlm:aff id="aff7"><addr-line>International Wheat Genome Sequencing Consortium (IWGSC), Bethesda, Maryland, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>International Wheat Genome Sequencing Consortium (IWGSC), Bethesda, Maryland</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Zheng, You Liang" sort="Zheng, You Liang" uniqKey="Zheng Y" first="You-Liang" last="Zheng">You-Liang Zheng</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu</wicri:regionArea><wicri:noRegion>Chengdu</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Chunji" sort="Liu, Chunji" uniqKey="Liu C" first="Chunji" last="Liu">Chunji Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Commonwealth Scientific and Industrial Research Organisation (CSIRO) Plant Industry, St Lucia, Brisbane, Queensland, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Commonwealth Scientific and Industrial Research Organisation (CSIRO) Plant Industry, St Lucia, Brisbane, Queensland</wicri:regionArea><wicri:noRegion>Queensland</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>School of Plant Biology, The University of Western Australia, Perth, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>School of Plant Biology, The University of Western Australia, Perth</wicri:regionArea><wicri:noRegion>Perth</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Structural changes of chromosomes are a primary mechanism of genome rearrangement over the course of evolution and detailed knowledge of such changes in a given species and its close relatives should increase the efficiency and precision of chromosome engineering in crop improvement. We have identified sequences bordering each of the main translocation and inversion breakpoints on chromosomes 4A, 5A and 7B of the modern bread wheat genome. The locations of these breakpoints allow, for the first time, a detailed description of the evolutionary origins of these chromosomes at the gene level. Results from this study also demonstrate that, although the strategy of exploiting sorted chromosome arms has dramatically simplified the efforts of wheat genome sequencing, simultaneous analysis of sequences from homoeologous and non-homoeologous chromosomes is essential in understanding the origins of DNA sequences in polyploid species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Burt, Dw" uniqKey="Burt D">DW Burt</name></author><author><name sortKey="Bruley, C" uniqKey="Bruley C">C Bruley</name></author><author><name sortKey="Dunn, Ic" uniqKey="Dunn I">IC Dunn</name></author><author><name sortKey="Jones, Ct" uniqKey="Jones C">CT Jones</name></author><author><name sortKey="Ramage, A" uniqKey="Ramage A">A Ramage</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sankoff, D" uniqKey="Sankoff D">D Sankoff</name></author><author><name sortKey="Nadeau, Jh" uniqKey="Nadeau J">JH 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">24260197</article-id><article-id pub-id-type="pmc">3829836</article-id><article-id pub-id-type="publisher-id">PONE-D-13-09774</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0079329</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title>Sequence-Based Analysis of Translocations and Inversions in Bread Wheat (<italic>Triticum aestivum</italic> L.)</article-title><alt-title alt-title-type="running-head">Translocations and Inversions in Bread Wheat</alt-title></title-group><contrib-group><contrib contrib-type="author" equal-contrib="yes"><name><surname>Ma</surname><given-names>Jian</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Stiller</surname><given-names>Jiri</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Berkman</surname><given-names>Paul J.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wei</surname><given-names>Yuming</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rogers</surname><given-names>Jan</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Feuillet</surname><given-names>Catherine</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Dolezel</surname><given-names>Jaroslav</given-names></name><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Mayer</surname><given-names>Klaus F.</given-names></name><xref ref-type="aff" rid="aff6"><sup>6</sup></xref></contrib><contrib contrib-type="author"><name><surname>Eversole</surname><given-names>Kellye</given-names></name><xref ref-type="aff" rid="aff7"><sup>7</sup></xref></contrib><contrib contrib-type="author"><name><surname>Zheng</surname><given-names>You-Liang</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Chunji</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff8"><sup>8</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Commonwealth Scientific and Industrial Research Organisation (CSIRO) Plant Industry, St Lucia, Brisbane, Queensland, Australia</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, China</addr-line></aff><aff id="aff3"><label>3</label><addr-line>The Genome Analysis Centre and International Wheat Genome Sequencing Consortium, Norwich Research Park, Norwich, United Kingdom</addr-line></aff><aff id="aff4"><label>4</label><addr-line>Institute National de Researche Agronomieque (INRA) - University Blaise Pascal, Genetics, Diversity and Ecophysiology of Cereals, Domaine de Crouelle, Clermont Ferrand, France</addr-line></aff><aff id="aff5"><label>5</label><addr-line>Centre of the Region Hana for Biotechnological and Agricultural Research, Institute of Experimental Botany, Olomouc-Holice, Czech Republic</addr-line></aff><aff id="aff6"><label>6</label><addr-line>Helmholtz Center Munich, German research Center for Environment and Health, Neuherberg, Germany</addr-line></aff><aff id="aff7"><label>7</label><addr-line>International Wheat Genome Sequencing Consortium (IWGSC), Bethesda, Maryland, United States of America</addr-line></aff><aff id="aff8"><label>8</label><addr-line>School of Plant Biology, The University of Western Australia, Perth, Australia</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Nelson</surname><given-names>James C.</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Kansas State University, United States of America</addr-line></aff><author-notes><corresp id="cor1">* E-mail: <email>chunji.liu@csiro.au</email></corresp><fn fn-type="conflict"><p><bold>Competing Interests: </bold>The authors have declared that no competing inteests exist.</p></fn><fn fn-type="con"><p>Conceived and designed the experiments: CL JS YLZ YW. Performed the experiments: JM JS PJB. Analyzed the data: JM JS PJB. Contributed reagents/materials/analysis tools: JR CF JD KFM KE. Wrote the paper: CL JM JS PJB YLZ.</p></fn></author-notes><pub-date pub-type="collection"><year>2013</year></pub-date><pub-date pub-type="epub"><day>15</day><month>11</month><year>2013</year></pub-date><volume>8</volume><issue>11</issue><elocation-id>e79329</elocation-id><history><date date-type="received"><day>4</day><month>3</month><year>2013</year></date><date date-type="accepted"><day>30</day><month>9</month><year>2013</year></date></history><permissions><copyright-year>2013</copyright-year><copyright-holder>Ma et al</copyright-holder><license><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><abstract><p>Structural changes of chromosomes are a primary mechanism of genome rearrangement over the course of evolution and detailed knowledge of such changes in a given species and its close relatives should increase the efficiency and precision of chromosome engineering in crop improvement. We have identified sequences bordering each of the main translocation and inversion breakpoints on chromosomes 4A, 5A and 7B of the modern bread wheat genome. The locations of these breakpoints allow, for the first time, a detailed description of the evolutionary origins of these chromosomes at the gene level. Results from this study also demonstrate that, although the strategy of exploiting sorted chromosome arms has dramatically simplified the efforts of wheat genome sequencing, simultaneous analysis of sequences from homoeologous and non-homoeologous chromosomes is essential in understanding the origins of DNA sequences in polyploid species.</p></abstract><funding-group><funding-statement>The work reported in this paper is funded by Commonwealth Scientific and Industrial Research Organisation Plant Industry. The funders played a role in deciding to publish this paper. However, they had no role in study design, data collection and analysis, or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="5"></page-count></counts></article-meta></front></pmc><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>France</li><li>Royaume-Uni</li><li>République populaire de Chine</li><li>République tchèque</li><li>États-Unis</li></country><region><li>Auvergne (région administrative)</li><li>Auvergne-Rhône-Alpes</li><li>Maryland</li></region><settlement><li>Clermont-Ferrand</li></settlement></list><tree><country name="Australie"><noRegion><name sortKey="Ma, Jian" sort="Ma, Jian" uniqKey="Ma J" first="Jian" last="Ma">Jian Ma</name></noRegion><name sortKey="Berkman, Paul J" sort="Berkman, Paul J" uniqKey="Berkman P" first="Paul J." last="Berkman">Paul J. Berkman</name><name sortKey="Liu, Chunji" sort="Liu, Chunji" uniqKey="Liu C" first="Chunji" last="Liu">Chunji Liu</name><name sortKey="Liu, Chunji" sort="Liu, Chunji" uniqKey="Liu C" first="Chunji" last="Liu">Chunji Liu</name><name sortKey="Stiller, Jiri" sort="Stiller, Jiri" uniqKey="Stiller J" first="Jiri" last="Stiller">Jiri Stiller</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Ma, Jian" sort="Ma, Jian" uniqKey="Ma J" first="Jian" last="Ma">Jian Ma</name></noRegion><name sortKey="Wei, Yuming" sort="Wei, Yuming" uniqKey="Wei Y" first="Yuming" last="Wei">Yuming Wei</name><name sortKey="Zheng, You Liang" sort="Zheng, You Liang" uniqKey="Zheng Y" first="You-Liang" last="Zheng">You-Liang Zheng</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Rogers, Jan" sort="Rogers, Jan" uniqKey="Rogers J" first="Jan" last="Rogers">Jan Rogers</name></noRegion></country><country name="France"><region name="Auvergne-Rhône-Alpes"><name sortKey="Feuillet, Catherine" sort="Feuillet, Catherine" uniqKey="Feuillet C" first="Catherine" last="Feuillet">Catherine Feuillet</name></region></country><country name="République tchèque"><noRegion><name sortKey="Dolezel, Jaroslav" sort="Dolezel, Jaroslav" uniqKey="Dolezel J" first="Jaroslav" last="Dolezel">Jaroslav Dolezel</name></noRegion></country><country name="Allemagne"><noRegion><name sortKey="Mayer, Klaus F" sort="Mayer, Klaus F" uniqKey="Mayer K" first="Klaus F." last="Mayer">Klaus F. Mayer</name></noRegion></country><country name="États-Unis"><region name="Maryland"><name sortKey="Eversole, Kellye" sort="Eversole, Kellye" uniqKey="Eversole K" first="Kellye" last="Eversole">Kellye Eversole</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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