The quail anatomy portal
Identifieur interne : 001291 ( Pmc/Checkpoint ); précédent : 001290; suivant : 001292The quail anatomy portal
Auteurs : Avnika A. Ruparelia [Australie] ; Johanna E. Simkin [Australie] ; David Salgado [Australie, France] ; Donald F. Newgreen [Australie] ; Gabriel G. Martins [Portugal] ; Robert J. Bryson-Richardson [Australie]Source :
- Database: The Journal of Biological Databases and Curation [ 1758-0463 ] ; 2014.
Abstract
The Japanese quail is a widely used model organism for the study of embryonic development; however, anatomical resources are lacking. The Quail Anatomy Portal (QAP) provides 22 detailed three-dimensional (3D) models of quail embryos during development from embryonic day (E)1 to E15 generated using optical projection tomography. The 3D models provided can be virtually sectioned to investigate anatomy. Furthermore, using the 3D nature of the models, we have generated a tool to assist in the staging of quail samples. Volume renderings of each stage are provided and can be rotated to allow visualization from multiple angles allowing easy comparison of features both between stages in the database and between images or samples in the laboratory. The use of JavaScript, PHP and HTML ensure the database is accessible to users across different operating systems, including mobile devices, facilitating its use in the laboratory.The QAP provides a unique resource for researchers using the quail model. The ability to virtually section anatomical models throughout development provides the opportunity for researchers to virtually dissect the quail and also provides a valuable tool for the education of students and researchers new to the field.
(For review username: demo, password: quail123)
Url:
DOI: 10.1093/database/bau028
PubMed: 24715219
PubMed Central: 3978374
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
PMC:3978374Le document en format XML
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<front><div type="abstract" xml:lang="en"><p>The Japanese quail is a widely used model organism for the study of embryonic development; however, anatomical resources are lacking. The Quail Anatomy Portal (QAP) provides 22 detailed three-dimensional (3D) models of quail embryos during development from embryonic day (E)1 to E15 generated using optical projection tomography. The 3D models provided can be virtually sectioned to investigate anatomy. Furthermore, using the 3D nature of the models, we have generated a tool to assist in the staging of quail samples. Volume renderings of each stage are provided and can be rotated to allow visualization from multiple angles allowing easy comparison of features both between stages in the database and between images or samples in the laboratory. The use of JavaScript, PHP and HTML ensure the database is accessible to users across different operating systems, including mobile devices, facilitating its use in the laboratory.The QAP provides a unique resource for researchers using the quail model. The ability to virtually section anatomical models throughout development provides the opportunity for researchers to virtually dissect the quail and also provides a valuable tool for the education of students and researchers new to the field.</p>
<p><bold>Database URL</bold>
: <ext-link ext-link-type="uri" xlink:href="http://quail.anatomyportal.org">http://quail.anatomyportal.org</ext-link>
</p>
<p>(For review username: demo, password: quail123)</p>
</div>
</front>
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<front><journal-meta><journal-id journal-id-type="nlm-ta">Database (Oxford)</journal-id>
<journal-id journal-id-type="iso-abbrev">Database (Oxford)</journal-id>
<journal-id journal-id-type="publisher-id">database</journal-id>
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<article-id pub-id-type="pmc">3978374</article-id>
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<article-id pub-id-type="publisher-id">bau028</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Database Tool</subject>
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<title-group><article-title>The quail anatomy portal</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Ruparelia</surname>
<given-names>Avnika A.</given-names>
</name>
<xref ref-type="aff" rid="bau028-AFF1"><sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="bau028-FN1"><sup>†</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Simkin</surname>
<given-names>Johanna E.</given-names>
</name>
<xref ref-type="aff" rid="bau028-AFF1"><sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="bau028-FN1"><sup>†</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Salgado</surname>
<given-names>David</given-names>
</name>
<xref ref-type="aff" rid="bau028-AFF1"><sup>3</sup>
</xref>
<xref ref-type="aff" rid="bau028-AFF1"><sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Newgreen</surname>
<given-names>Donald F.</given-names>
</name>
<xref ref-type="aff" rid="bau028-AFF1"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Martins</surname>
<given-names>Gabriel G.</given-names>
</name>
<xref ref-type="aff" rid="bau028-AFF1"><sup>5</sup>
</xref>
<xref ref-type="aff" rid="bau028-AFF1"><sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Bryson-Richardson</surname>
<given-names>Robert J.</given-names>
</name>
<xref ref-type="aff" rid="bau028-AFF1"><sup>1</sup>
</xref>
<xref ref-type="corresp" rid="bau028-COR1">*</xref>
</contrib>
<aff id="bau028-AFF1"><sup>1</sup>
School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia,<sup>2</sup>
The Murdoch Childrens Research Institute, The Royal Children's Hospital, Flemington Road, Parkville, Melbourne, Victoria 3052, Australia,<sup>3</sup>
Australian Regenerative Medicine Institute, Monash University, Clayton, Victoria 3800, Australia,<sup>4</sup>
Aix Marseille Université, Inserm, GMGF UMR_S 910, 13385 Marseille, France,<sup>5</sup>
Instituto Gulbenkian de Ciencia, Rua da Avenida Grande 6, 2780-156 Oeiras, Portugal and<sup>6</sup>
Centre for Environmental Biology, Faculdade de Ciencias da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal</aff>
</contrib-group>
<author-notes><corresp id="bau028-COR1">*Corresponding author: Tel: <phone>+61 399024629</phone>
; Fax: <phone>+61 399055613</phone>
; Email: <email>robert.bryson-richardson@monash.edu</email>
</corresp>
<fn id="bau028-FN1"><p>†These authors contributed equally to this work.</p>
</fn>
<fn><p><bold>Citation details:</bold>
Ruparelia A.A., Simkin J.E., Salgado D., <italic>et al.</italic>
The quail anatomy portal. <italic>Database </italic>
(2014) Vol. 2014: article ID bau028; doi:10.1093/database/bau028.</p>
</fn>
</author-notes>
<pub-date pub-type="collection"><year>2014</year>
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<pub-date pub-type="epub"><day>7</day>
<month>4</month>
<year>2014</year>
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<pub-date pub-type="pmc-release"><day>7</day>
<month>4</month>
<year>2014</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
. </pmc-comment>
<volume>2014</volume>
<elocation-id>bau028</elocation-id>
<history><date date-type="received"><day>24</day>
<month>1</month>
<year>2014</year>
</date>
<date date-type="accepted"><day>4</day>
<month>3</month>
<year>2014</year>
</date>
</history>
<permissions><copyright-statement>© The Author(s) 2014. Published by Oxford University Press.</copyright-statement>
<copyright-year>2014</copyright-year>
<license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link>
), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<abstract><p>The Japanese quail is a widely used model organism for the study of embryonic development; however, anatomical resources are lacking. The Quail Anatomy Portal (QAP) provides 22 detailed three-dimensional (3D) models of quail embryos during development from embryonic day (E)1 to E15 generated using optical projection tomography. The 3D models provided can be virtually sectioned to investigate anatomy. Furthermore, using the 3D nature of the models, we have generated a tool to assist in the staging of quail samples. Volume renderings of each stage are provided and can be rotated to allow visualization from multiple angles allowing easy comparison of features both between stages in the database and between images or samples in the laboratory. The use of JavaScript, PHP and HTML ensure the database is accessible to users across different operating systems, including mobile devices, facilitating its use in the laboratory.The QAP provides a unique resource for researchers using the quail model. The ability to virtually section anatomical models throughout development provides the opportunity for researchers to virtually dissect the quail and also provides a valuable tool for the education of students and researchers new to the field.</p>
<p><bold>Database URL</bold>
: <ext-link ext-link-type="uri" xlink:href="http://quail.anatomyportal.org">http://quail.anatomyportal.org</ext-link>
</p>
<p>(For review username: demo, password: quail123)</p>
</abstract>
<counts><page-count count="6"></page-count>
</counts>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Australie</li>
<li>France</li>
<li>Portugal</li>
</country>
<region><li>Provence-Alpes-Côte d'Azur</li>
</region>
<settlement><li>Marseille</li>
</settlement>
<orgName><li>Université d'Aix-Marseille</li>
</orgName>
</list>
<tree><country name="Australie"><noRegion><name sortKey="Ruparelia, Avnika A" sort="Ruparelia, Avnika A" uniqKey="Ruparelia A" first="Avnika A." last="Ruparelia">Avnika A. Ruparelia</name>
</noRegion>
<name sortKey="Bryson Richardson, Robert J" sort="Bryson Richardson, Robert J" uniqKey="Bryson Richardson R" first="Robert J." last="Bryson-Richardson">Robert J. Bryson-Richardson</name>
<name sortKey="Newgreen, Donald F" sort="Newgreen, Donald F" uniqKey="Newgreen D" first="Donald F." last="Newgreen">Donald F. Newgreen</name>
<name sortKey="Salgado, David" sort="Salgado, David" uniqKey="Salgado D" first="David" last="Salgado">David Salgado</name>
<name sortKey="Simkin, Johanna E" sort="Simkin, Johanna E" uniqKey="Simkin J" first="Johanna E." last="Simkin">Johanna E. Simkin</name>
</country>
<country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Salgado, David" sort="Salgado, David" uniqKey="Salgado D" first="David" last="Salgado">David Salgado</name>
</region>
</country>
<country name="Portugal"><noRegion><name sortKey="Martins, Gabriel G" sort="Martins, Gabriel G" uniqKey="Martins G" first="Gabriel G." last="Martins">Gabriel G. Martins</name>
</noRegion>
<name sortKey="Martins, Gabriel G" sort="Martins, Gabriel G" uniqKey="Martins G" first="Gabriel G." last="Martins">Gabriel G. Martins</name>
</country>
</tree>
</affiliations>
</record>
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