Facilitating a Culture of Responsible and Effective Sharing of Cancer Genome Data
Identifieur interne : 000943 ( Pmc/Checkpoint ); précédent : 000942; suivant : 000944Facilitating a Culture of Responsible and Effective Sharing of Cancer Genome Data
Auteurs : Lillian L. Siu [Canada] ; Mark Lawler [Royaume-Uni] ; David Haussler [États-Unis] ; Bartha Maria Knoppers [Canada] ; Jeremy Lewin [Canada] ; Daniel J. Vis [Pays-Bas] ; Rachel G. Liao [États-Unis] ; Fabrice Andre [France] ; Ian Banks [Belgique] ; J. Carl Barrett [États-Unis] ; Carlos Caldas [Royaume-Uni] ; Anamaria Aranha Camargo [Brésil] ; Rebecca C. Fitzgerald [Royaume-Uni] ; Mao Mao [Corée du Sud] ; John E. Mattison [États-Unis] ; William Pao [Suisse] ; William R. Sellers [États-Unis] ; Patrick Sullivan [Canada] ; Bin Tean Teh [Singapour] ; Robyn Ward [Australie] ; Jean Claude Zenklusen [États-Unis] ; Charles L. Sawyers [États-Unis] ; Emile E. Voest [Pays-Bas]Source :
- Nature medicine [ 1078-8956 ] ; 2016.
Abstract
Rapid and affordable tumor molecular profiling has led to an explosion of clinical and genomic data poised to enhance diagnosis, prognostication and treatment of cancer. A critical point has now been reached where analysis and storage of annotated clinical and genomic information in unconnected silos will stall the advancement of precision cancer care. Information systems must be harmonized to overcome the multiple technical and logistical barriers for data sharing. Against this backdrop, the Global Alliance for Genomic Health (GA4GH) was established in 2013 to create a common framework that enables responsible, voluntary, and secure sharing of clinical and genomic data. This Perspective from the GA4GH Clinical Working Group Cancer Task Team highlights the data aggregation challenges faced by the field, suggests potential collaborative solutions, and describes how GA4GH can catalyze a harmonized data sharing culture.
Url:
DOI: 10.1038/nm.4089
PubMed: 27149219
PubMed Central: 4995884
Affiliations:
- Australie, Belgique, Brésil, Canada, Corée du Sud, France, Pays-Bas, Royaume-Uni, Singapour, Suisse, États-Unis
- Angleterre, Angleterre de l'Est, Californie, Hollande-Septentrionale, Maryland, Massachusetts, Ontario, Québec, Région capitale de Séoul, Région de Bruxelles-Capitale, État de New York, État de São Paulo
- Amsterdam, Bruxelles, Cambridge, Montréal, São Paulo, Séoul, Toronto
- Université McGill, Université de Cambridge, Université de Toronto
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PMC:4995884Le document en format XML
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<series><title level="j">Nature medicine</title>
<idno type="ISSN">1078-8956</idno>
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<front><div type="abstract" xml:lang="en"><p id="P1">Rapid and affordable tumor molecular profiling has led to an explosion of clinical and genomic data poised to enhance diagnosis, prognostication and treatment of cancer. A critical point has now been reached where analysis and storage of annotated clinical and genomic information in unconnected silos will stall the advancement of precision cancer care. Information systems must be harmonized to overcome the multiple technical and logistical barriers for data sharing. Against this backdrop, the Global Alliance for Genomic Health (GA4GH) was established in 2013 to create a common framework that enables responsible, voluntary, and secure sharing of clinical and genomic data. This Perspective from the GA4GH Clinical Working Group Cancer Task Team highlights the data aggregation challenges faced by the field, suggests potential collaborative solutions, and describes how GA4GH can catalyze a harmonized data sharing culture.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">9502015</journal-id>
<journal-id journal-id-type="pubmed-jr-id">8791</journal-id>
<journal-id journal-id-type="nlm-ta">Nat Med</journal-id>
<journal-id journal-id-type="iso-abbrev">Nat. Med.</journal-id>
<journal-title-group><journal-title>Nature medicine</journal-title>
</journal-title-group>
<issn pub-type="ppub">1078-8956</issn>
<issn pub-type="epub">1546-170X</issn>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">27149219</article-id>
<article-id pub-id-type="pmc">4995884</article-id>
<article-id pub-id-type="doi">10.1038/nm.4089</article-id>
<article-id pub-id-type="manuscript">NIHMS810334</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Facilitating a Culture of Responsible and Effective Sharing of Cancer Genome Data</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Siu</surname>
<given-names>Lillian L.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref rid="FN2" ref-type="author-notes">*</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Lawler</surname>
<given-names>Mark</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
<xref rid="FN2" ref-type="author-notes">*</xref>
<xref rid="FN1" ref-type="author-notes">ˆ</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Haussler</surname>
<given-names>David</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Knoppers</surname>
<given-names>Bartha Maria</given-names>
</name>
<xref ref-type="aff" rid="A4">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Lewin</surname>
<given-names>Jeremy</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Vis</surname>
<given-names>Daniel J.</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Liao</surname>
<given-names>Rachel G.</given-names>
</name>
<xref ref-type="aff" rid="A6">6</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Andre</surname>
<given-names>Fabrice</given-names>
</name>
<xref ref-type="aff" rid="A7">7</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Banks</surname>
<given-names>Ian</given-names>
</name>
<xref ref-type="aff" rid="A8">8</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Barrett</surname>
<given-names>J. Carl</given-names>
</name>
<xref ref-type="aff" rid="A9">9</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Caldas</surname>
<given-names>Carlos</given-names>
</name>
<xref ref-type="aff" rid="A10">10</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Camargo</surname>
<given-names>Anamaria Aranha</given-names>
</name>
<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Fitzgerald</surname>
<given-names>Rebecca C.</given-names>
</name>
<xref ref-type="aff" rid="A10">10</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Mao</surname>
<given-names>Mao</given-names>
</name>
<xref ref-type="aff" rid="A12">12</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Mattison</surname>
<given-names>John E.</given-names>
</name>
<xref ref-type="aff" rid="A13">13</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Pao</surname>
<given-names>William</given-names>
</name>
<xref ref-type="aff" rid="A14">14</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Sellers</surname>
<given-names>William R.</given-names>
</name>
<xref ref-type="aff" rid="A15">15</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Sullivan</surname>
<given-names>Patrick</given-names>
</name>
<xref ref-type="aff" rid="A16">16</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Teh</surname>
<given-names>Bin Tean</given-names>
</name>
<xref ref-type="aff" rid="A17">17</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Ward</surname>
<given-names>Robyn</given-names>
</name>
<xref ref-type="aff" rid="A18">18</xref>
</contrib>
<contrib contrib-type="author"><name><surname>ZenKlusen</surname>
<given-names>Jean Claude</given-names>
</name>
<xref ref-type="aff" rid="A19">19</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Sawyers</surname>
<given-names>Charles L</given-names>
</name>
<xref ref-type="aff" rid="A20">20</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Voest</surname>
<given-names>Emile E.</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
</contrib>
</contrib-group>
<aff id="A1"><label>1</label>
Princess Margaret Cancer Centre, University of Toronto, Toronto, Canada</aff>
<aff id="A2"><label>2</label>
Centre for Cancer Research and Cell Biology, Queen’s University, Belfast, UK</aff>
<aff id="A3"><label>3</label>
UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA</aff>
<aff id="A4"><label>4</label>
Centre of Genomics and Policy, McGill University, Montreal, Canada</aff>
<aff id="A5"><label>5</label>
The Netherlands Cancer Institute, Amsterdam, the Netherlands</aff>
<aff id="A6"><label>6</label>
The Global Alliance for Genomics and Health, Toronto, Canada and the Broad Institute, Cambridge, MA, USA</aff>
<aff id="A7"><label>7</label>
Gustave Roussy and Université Paris Sud, Villejuif, France</aff>
<aff id="A8"><label>8</label>
Patient’s Advocacy Committee, European Cancer Organization, Brussels, Belgium</aff>
<aff id="A9"><label>9</label>
Translational Sciences, Oncology iMED, AstraZeneca, Waltham, MA, USA</aff>
<aff id="A10"><label>10</label>
University of Cambridge, Cambridge, UK</aff>
<aff id="A11"><label>11</label>
Hospital Sírio-Libanês, São Paulo, Brazil</aff>
<aff id="A12"><label>12</label>
Yonsei Cancer Research Institute, Yonsei University College of Medicine, Seoul, Korea</aff>
<aff id="A13"><label>13</label>
Kaiser Permanente, Pasadena, CA, USA</aff>
<aff id="A14"><label>14</label>
Roche Innovation Center Basel, Pharma Research and Early Development, Roche, Basel, Switzerland</aff>
<aff id="A15"><label>15</label>
Novartis Institutes for Biomedical Research, Cambridge, MA, USA</aff>
<aff id="A16"><label>16</label>
Advocacy for Canadian Children Oncology Network, Vancouver, Canada</aff>
<aff id="A17"><label>17</label>
National Cancer Centre Singapore, Singapore</aff>
<aff id="A18"><label>18</label>
University of Queensland, St. Lucia, Australia</aff>
<aff id="A19"><label>19</label>
The Cancer Genome Atlas, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA</aff>
<aff id="A20"><label>20</label>
Memorial Sloan Kettering Cancer Center, New York, NY, USA</aff>
<author-notes><corresp id="FN1"><label>ˆ</label>
Corresponding Author: Mark Lawler, Centre for Cancer Research and Cell Biology, Queen’s University Belfast, CCRCB, Lisburn Road 97, Belfast, BT9 7AE, United Kingdom, Phone: 44-28-9097-2931, Fax: 44-28-9097-2776, <email>mark.lawler@qub.ac.uk</email>
</corresp>
<fn id="FN2" fn-type="equal"><label>*</label>
<p>These authors contributed equally</p>
</fn>
</author-notes>
<pub-date pub-type="nihms-submitted"><day>15</day>
<month>8</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="ppub"><day>5</day>
<month>5</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>24</day>
<month>8</month>
<year>2016</year>
</pub-date>
<volume>22</volume>
<issue>5</issue>
<fpage>464</fpage>
<lpage>471</lpage>
<pmc-comment>elocation-id from pubmed: 10.1038/nm.4089</pmc-comment>
<abstract><p id="P1">Rapid and affordable tumor molecular profiling has led to an explosion of clinical and genomic data poised to enhance diagnosis, prognostication and treatment of cancer. A critical point has now been reached where analysis and storage of annotated clinical and genomic information in unconnected silos will stall the advancement of precision cancer care. Information systems must be harmonized to overcome the multiple technical and logistical barriers for data sharing. Against this backdrop, the Global Alliance for Genomic Health (GA4GH) was established in 2013 to create a common framework that enables responsible, voluntary, and secure sharing of clinical and genomic data. This Perspective from the GA4GH Clinical Working Group Cancer Task Team highlights the data aggregation challenges faced by the field, suggests potential collaborative solutions, and describes how GA4GH can catalyze a harmonized data sharing culture.</p>
</abstract>
</article-meta>
</front>
</pmc>
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