The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems
Identifieur interne : 000042 ( Pmc/Checkpoint ); précédent : 000041; suivant : 000043The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems
Auteurs : Ana Hranilovic [Australie] ; Marina Bely [France] ; Isabelle Masneuf-Pomarede [France] ; Vladimir Jiranek [Australie] ; Warren Albertin [France]Source :
- PLoS ONE [ 1932-6203 ] ; 2017.
Abstract
The yeast
Url:
DOI: 10.1371/journal.pone.0184652
PubMed: 28910346
PubMed Central: 5599012
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The evolution of <italic>Lachancea thermotolerans</italic> is driven by geographical determination, anthropisation and flux between different ecosystems</title><author><name sortKey="Hranilovic, Ana" sort="Hranilovic, Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Bely, Marina" sort="Bely, Marina" uniqKey="Bely M" first="Marina" last="Bely">Marina Bely</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation></author><author><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Bordeaux Sciences Agro, Gradignan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Bordeaux Sciences Agro, Gradignan</wicri:regionArea><wicri:noRegion>Gradignan</wicri:noRegion><wicri:noRegion>Gradignan</wicri:noRegion></affiliation></author><author><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>ENSCBP, Bordeaux INP, Pessac, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>ENSCBP, Bordeaux INP, Pessac</wicri:regionArea><wicri:noRegion>Pessac</wicri:noRegion><wicri:noRegion>Pessac</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">28910346</idno><idno type="pmc">5599012</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5599012</idno><idno type="RBID">PMC:5599012</idno><idno type="doi">10.1371/journal.pone.0184652</idno><date when="2017">2017</date><idno type="wicri:Area/Pmc/Corpus">002996</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002996</idno><idno type="wicri:Area/Pmc/Curation">002846</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">002846</idno><idno type="wicri:Area/Pmc/Checkpoint">000042</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000042</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The evolution of <italic>Lachancea thermotolerans</italic> is driven by geographical determination, anthropisation and flux between different ecosystems</title><author><name sortKey="Hranilovic, Ana" sort="Hranilovic, Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Bely, Marina" sort="Bely, Marina" uniqKey="Bely M" first="Marina" last="Bely">Marina Bely</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation></author><author><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Bordeaux Sciences Agro, Gradignan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Bordeaux Sciences Agro, Gradignan</wicri:regionArea><wicri:noRegion>Gradignan</wicri:noRegion><wicri:noRegion>Gradignan</wicri:noRegion></affiliation></author><author><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon</wicri:regionArea><wicri:noRegion>Villenave d'Ornon</wicri:noRegion><wicri:noRegion>Villenave d'Ornon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>ENSCBP, Bordeaux INP, Pessac, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>ENSCBP, Bordeaux INP, Pessac</wicri:regionArea><wicri:noRegion>Pessac</wicri:noRegion><wicri:noRegion>Pessac</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The yeast <italic>Lachancea thermotolerans</italic> (formerly <italic>Kluyveromyces thermotolerans</italic>) is a species with remarkable, yet underexplored, biotechnological potential. This ubiquist occupies a range of natural and anthropic habitats covering a wide geographic span. To gain an insight into <italic>L</italic>. <italic>thermotolerans</italic> population diversity and structure, 172 isolates sourced from diverse habitats worldwide were analysed using a set of 14 microsatellite markers. The resultant clustering revealed that the evolution of <italic>L</italic>. <italic>thermotolerans</italic> has been driven by the geography and ecological niche of the isolation sources. Isolates originating from anthropic environments, in particular grapes and wine, were genetically close, thus suggesting domestication events within the species. The observed clustering was further validated by several means including, population structure analysis, F-statistics, Mantel’s test and the analysis of molecular variance (AMOVA). Phenotypic performance of isolates was tested using several growth substrates and physicochemical conditions, providing added support for the clustering. Altogether, this study sheds light on the genotypic and phenotypic diversity of <italic>L</italic>. <italic>thermotolerans</italic>, contributing to a better understanding of the population structure, ecology and evolution of this non-<italic>Saccharomyces</italic> yeast.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Sicard, D" uniqKey="Sicard D">D Sicard</name></author><author><name sortKey="Legras, Jl" uniqKey="Legras J">JL Legras</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Borneman, Ar" uniqKey="Borneman A">AR Borneman</name></author><author><name sortKey="Forgan, Ah" uniqKey="Forgan A">AH Forgan</name></author><author><name sortKey="Kolouchova, R" uniqKey="Kolouchova R">R Kolouchova</name></author><author><name sortKey="Fraser, Ja" uniqKey="Fraser J">JA Fraser</name></author><author><name sortKey="Schmidt, Sa" uniqKey="Schmidt S">SA 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, CA USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">28910346</article-id><article-id pub-id-type="pmc">5599012</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0184652</article-id><article-id pub-id-type="publisher-id">PONE-D-17-24053</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Research and Analysis Methods</subject><subj-group><subject>Experimental Organism Systems</subject><subj-group><subject>Model Organisms</subject><subj-group><subject>Saccharomyces Cerevisiae</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Research and Analysis Methods</subject><subj-group><subject>Model Organisms</subject><subj-group><subject>Saccharomyces Cerevisiae</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Organisms</subject><subj-group><subject>Fungi</subject><subj-group><subject>Yeast</subject><subj-group><subject>Saccharomyces</subject><subj-group><subject>Saccharomyces Cerevisiae</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Research and Analysis Methods</subject><subj-group><subject>Experimental Organism Systems</subject><subj-group><subject>Yeast and Fungal Models</subject><subj-group><subject>Saccharomyces Cerevisiae</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>People and Places</subject><subj-group><subject>Geographical Locations</subject><subj-group><subject>Europe</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Mycology</subject><subj-group><subject>Fungal Evolution</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Evolutionary Biology</subject><subj-group><subject>Population Genetics</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Genetics</subject><subj-group><subject>Population Genetics</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Population Biology</subject><subj-group><subject>Population Genetics</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Biogeography</subject></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Ecology and Environmental Sciences</subject><subj-group><subject>Biogeography</subject></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Earth Sciences</subject><subj-group><subject>Geography</subject><subj-group><subject>Biogeography</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Nutrition</subject><subj-group><subject>Diet</subject><subj-group><subject>Beverages</subject><subj-group><subject>Alcoholic Beverages</subject><subj-group><subject>Wine</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Medicine and Health Sciences</subject><subj-group><subject>Nutrition</subject><subj-group><subject>Diet</subject><subj-group><subject>Beverages</subject><subj-group><subject>Alcoholic Beverages</subject><subj-group><subject>Wine</subject></subj-group></subj-group></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Genetics</subject><subj-group><subject>Gene Types</subject><subj-group><subject>Microsatellite Loci</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Biology and Life Sciences</subject><subj-group><subject>Ecology</subject><subj-group><subject>Ecological Niches</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v3"><subject>Ecology and Environmental Sciences</subject><subj-group><subject>Ecology</subject><subj-group><subject>Ecological Niches</subject></subj-group></subj-group></subj-group></article-categories><title-group><article-title>The evolution of <italic>Lachancea thermotolerans</italic> is driven by geographical determination, anthropisation and flux between different ecosystems</article-title><alt-title alt-title-type="running-head"><italic>Lachancea thermotolerans</italic> diversity study</alt-title></title-group><contrib-group><contrib contrib-type="author"><contrib-id authenticated="true" contrib-id-type="orcid">http://orcid.org/0000-0003-4602-959X</contrib-id><name><surname>Hranilovic</surname><given-names>Ana</given-names></name><role content-type="http://credit.casrai.org/">Formal analysis</role><role content-type="http://credit.casrai.org/">Investigation</role><role content-type="http://credit.casrai.org/">Methodology</role><role content-type="http://credit.casrai.org/">Software</role><role content-type="http://credit.casrai.org/">Visualization</role><role content-type="http://credit.casrai.org/">Writing – original draft</role><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bely</surname><given-names>Marina</given-names></name><role content-type="http://credit.casrai.org/">Conceptualization</role><role content-type="http://credit.casrai.org/">Formal analysis</role><role content-type="http://credit.casrai.org/">Funding acquisition</role><role content-type="http://credit.casrai.org/">Methodology</role><role content-type="http://credit.casrai.org/">Project administration</role><role content-type="http://credit.casrai.org/">Writing – review & editing</role><xref ref-type="aff" rid="aff003"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Masneuf-Pomarede</surname><given-names>Isabelle</given-names></name><role content-type="http://credit.casrai.org/">Conceptualization</role><role content-type="http://credit.casrai.org/">Formal analysis</role><role content-type="http://credit.casrai.org/">Funding acquisition</role><role content-type="http://credit.casrai.org/">Methodology</role><role content-type="http://credit.casrai.org/">Project administration</role><role content-type="http://credit.casrai.org/">Writing – review & editing</role><xref ref-type="aff" rid="aff003"><sup>3</sup></xref><xref ref-type="aff" rid="aff004"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Jiranek</surname><given-names>Vladimir</given-names></name><role content-type="http://credit.casrai.org/">Conceptualization</role><role content-type="http://credit.casrai.org/">Funding acquisition</role><role content-type="http://credit.casrai.org/">Project administration</role><role content-type="http://credit.casrai.org/">Writing – review & editing</role><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Albertin</surname><given-names>Warren</given-names></name><role content-type="http://credit.casrai.org/">Formal analysis</role><role content-type="http://credit.casrai.org/">Investigation</role><role content-type="http://credit.casrai.org/">Methodology</role><role content-type="http://credit.casrai.org/">Software</role><role content-type="http://credit.casrai.org/">Visualization</role><role content-type="http://credit.casrai.org/">Writing – review & editing</role><xref ref-type="aff" rid="aff003"><sup>3</sup></xref><xref ref-type="aff" rid="aff005"><sup>5</sup></xref><xref ref-type="corresp" rid="cor001">*</xref></contrib></contrib-group><aff id="aff001"><label>1</label><addr-line>The Australian Research Council Training Centre for Innovative Wine Production, Adelaide, South Australia, Australia</addr-line></aff><aff id="aff002"><label>2</label><addr-line>Department of Wine and Food Science, The University of Adelaide, Urbrrae, South Australia, Australia</addr-line></aff><aff id="aff003"><label>3</label><addr-line>Unité de recherche Œnologie, Institut de la Science de la Vigne et du Vin, University of Bordeaux, Villenave d'Ornon, France</addr-line></aff><aff id="aff004"><label>4</label><addr-line>Bordeaux Sciences Agro, Gradignan, France</addr-line></aff><aff id="aff005"><label>5</label><addr-line>ENSCBP, Bordeaux INP, Pessac, France</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Fairhead</surname><given-names>Cecile</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Institut de Genetique et Microbiologie, FRANCE</addr-line></aff><author-notes><fn fn-type="COI-statement" id="coi001"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><corresp id="cor001">* E-mail: <email>warren.albertin@u-bordeaux.fr</email></corresp></author-notes><pub-date pub-type="epub"><day>14</day><month>9</month><year>2017</year></pub-date><pub-date pub-type="collection"><year>2017</year></pub-date><volume>12</volume><issue>9</issue><elocation-id>e0184652</elocation-id><history><date date-type="received"><day>25</day><month>6</month><year>2017</year></date><date date-type="accepted"><day>28</day><month>8</month><year>2017</year></date></history><permissions><copyright-statement>© 2017 Hranilovic et al</copyright-statement><copyright-year>2017</copyright-year><copyright-holder>Hranilovic et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="pone.0184652.pdf"></self-uri><abstract><p>The yeast <italic>Lachancea thermotolerans</italic> (formerly <italic>Kluyveromyces thermotolerans</italic>) is a species with remarkable, yet underexplored, biotechnological potential. This ubiquist occupies a range of natural and anthropic habitats covering a wide geographic span. To gain an insight into <italic>L</italic>. <italic>thermotolerans</italic> population diversity and structure, 172 isolates sourced from diverse habitats worldwide were analysed using a set of 14 microsatellite markers. The resultant clustering revealed that the evolution of <italic>L</italic>. <italic>thermotolerans</italic> has been driven by the geography and ecological niche of the isolation sources. Isolates originating from anthropic environments, in particular grapes and wine, were genetically close, thus suggesting domestication events within the species. The observed clustering was further validated by several means including, population structure analysis, F-statistics, Mantel’s test and the analysis of molecular variance (AMOVA). Phenotypic performance of isolates was tested using several growth substrates and physicochemical conditions, providing added support for the clustering. Altogether, this study sheds light on the genotypic and phenotypic diversity of <italic>L</italic>. <italic>thermotolerans</italic>, contributing to a better understanding of the population structure, ecology and evolution of this non-<italic>Saccharomyces</italic> yeast.</p></abstract><funding-group><award-group id="award001"><funding-source><institution-wrap><institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/501100000923</institution-id><institution>Australian Research Council</institution></institution-wrap></funding-source><award-id>IC130100005</award-id><principal-award-recipient><name><surname>Jiranek</surname><given-names>Vladimir</given-names></name></principal-award-recipient></award-group><award-group id="award002"><funding-source><institution-wrap><institution-id institution-id-type="funder-id">http://dx.doi.org/10.13039/501100007915</institution-id><institution>Wine Australia</institution></institution-wrap></funding-source><principal-award-recipient><contrib-id authenticated="true" contrib-id-type="orcid">http://orcid.org/0000-0003-4602-959X</contrib-id><name><surname>Hranilovic</surname><given-names>Ana</given-names></name></principal-award-recipient></award-group><award-group id="award003"><funding-source><institution>ISVV</institution></funding-source><principal-award-recipient><contrib-id authenticated="true" contrib-id-type="orcid">http://orcid.org/0000-0003-4602-959X</contrib-id><name><surname>Hranilovic</surname><given-names>Ana</given-names></name></principal-award-recipient></award-group><funding-statement>This research was conducted by the Australian Research Council Industrial Transformation Training Centre for Innovative Wine Production (Project IC130100005) to VJ with support from the Wine Australia and industry partners. AH received an ISVV Travel Grant and Wine Australia Travel Grant (AGT1524). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><fig-count count="4"></fig-count><table-count count="2"></table-count><page-count count="17"></page-count></counts><custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name><meta-value>All relevant data are within the paper and its Supporting Information files.</meta-value></custom-meta></custom-meta-group></article-meta><notes><title>Data Availability</title><p>All relevant data are within the paper and its Supporting Information files.</p></notes></front></pmc><affiliations><list><country><li>Australie</li><li>France</li></country></list><tree><country name="Australie"><noRegion><name sortKey="Hranilovic, Ana" sort="Hranilovic, Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name></noRegion><name sortKey="Hranilovic, Ana" sort="Hranilovic, Ana" uniqKey="Hranilovic A" first="Ana" last="Hranilovic">Ana Hranilovic</name><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name><name sortKey="Jiranek, Vladimir" sort="Jiranek, Vladimir" uniqKey="Jiranek V" first="Vladimir" last="Jiranek">Vladimir Jiranek</name></country><country name="France"><noRegion><name sortKey="Bely, Marina" sort="Bely, Marina" uniqKey="Bely M" first="Marina" last="Bely">Marina Bely</name></noRegion><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><name sortKey="Albertin, Warren" sort="Albertin, Warren" uniqKey="Albertin W" first="Warren" last="Albertin">Warren Albertin</name><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name><name sortKey="Masneuf Pomarede, Isabelle" sort="Masneuf Pomarede, Isabelle" uniqKey="Masneuf Pomarede I" first="Isabelle" last="Masneuf-Pomarede">Isabelle Masneuf-Pomarede</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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