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The Amphimedon queenslandica genome and the evolution of animal complexity

Identifieur interne : 003B51 ( PascalFrancis/Curation ); précédent : 003B50; suivant : 003B52

The Amphimedon queenslandica genome and the evolution of animal complexity

Auteurs : Mansi Srivastava [États-Unis] ; Oleg Simakov [Allemagne] ; Jarrod Chapman [États-Unis] ; Bryony Fahey [Australie] ; Marie E. A. Gauthier [Australie] ; Therese Mitros [États-Unis] ; Gemma S. Richards [Australie] ; Cecilia Conaco [États-Unis] ; Michael Dacre [États-Unis] ; Uffe Hellsten [États-Unis] ; Claire Larroux [Australie] ; Nicholas H. Putnam [États-Unis] ; Mario Stanke [Allemagne] ; Maja Adamska [Australie] ; Aaron Darling [États-Unis] ; Sandie M. Degnan [Australie] ; Todd H. Oakley [États-Unis] ; David C. Plachetzki [États-Unis] ; YUFENG ZHAI [États-Unis] ; Marcin Adamski [Australie] ; Andrew Calcino [Australie] ; Scott F. Cummins [Australie] ; David M. Goodstein [États-Unis] ; Christina Harris [Australie] ; Daniel J. Jackson [Australie] ; Sally P. Leys [Canada] ; SHENGQIANG SHU [États-Unis] ; Ben J. Woodcroft [Australie] ; Michel Vervoort [France] ; Kenneth S. Kosik [États-Unis] ; Gerard Manning [États-Unis] ; Bernard M. Degnan [Australie] ; Daniel S. Rokhsar [États-Unis]

Source :

RBID : Pascal:10-0390536

Descripteurs français

English descriptors

Abstract

Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.
pA  
A01 01  1    @0 0028-0836
A02 01      @0 NATUAS
A03   1    @0 Nature : (Lond.)
A05       @2 466
A06       @2 7307
A08 01  1  ENG  @1 The Amphimedon queenslandica genome and the evolution of animal complexity
A11 01  1    @1 SRIVASTAVA (Mansi)
A11 02  1    @1 SIMAKOV (Oleg)
A11 03  1    @1 CHAPMAN (Jarrod)
A11 04  1    @1 FAHEY (Bryony)
A11 05  1    @1 GAUTHIER (Marie E. A.)
A11 06  1    @1 MITROS (Therese)
A11 07  1    @1 RICHARDS (Gemma S.)
A11 08  1    @1 CONACO (Cecilia)
A11 09  1    @1 DACRE (Michael)
A11 10  1    @1 HELLSTEN (Uffe)
A11 11  1    @1 LARROUX (Claire)
A11 12  1    @1 PUTNAM (Nicholas H.)
A11 13  1    @1 STANKE (Mario)
A11 14  1    @1 ADAMSKA (Maja)
A11 15  1    @1 DARLING (Aaron)
A11 16  1    @1 DEGNAN (Sandie M.)
A11 17  1    @1 OAKLEY (Todd H.)
A11 18  1    @1 PLACHETZKI (David C.)
A11 19  1    @1 YUFENG ZHAI
A11 20  1    @1 ADAMSKI (Marcin)
A11 21  1    @1 CALCINO (Andrew)
A11 22  1    @1 CUMMINS (Scott F.)
A11 23  1    @1 GOODSTEIN (David M.)
A11 24  1    @1 HARRIS (Christina)
A11 25  1    @1 JACKSON (Daniel J.)
A11 26  1    @1 LEYS (Sally P.)
A11 27  1    @1 SHENGQIANG SHU
A11 28  1    @1 WOODCROFT (Ben J.)
A11 29  1    @1 VERVOORT (Michel)
A11 30  1    @1 KOSIK (Kenneth S.)
A11 31  1    @1 MANNING (Gerard)
A11 32  1    @1 DEGNAN (Bernard M.)
A11 33  1    @1 ROKHSAR (Daniel S.)
A14 01      @1 Center for Integrative Genomics and Department of Molecular and Cell Biology, University of California @2 Berkeley, California 94720 @3 USA @Z 1 aut. @Z 6 aut. @Z 33 aut.
A14 02      @1 Molecular Evolution Genomics, University of Heidelberg @2 69117 Heidelberg @3 DEU @Z 2 aut.
A14 03      @1 Department of Energy Joint Genome Institute @2 Walnut Creek, California 94598 @3 USA @Z 3 aut. @Z 10 aut. @Z 23 aut. @Z 27 aut. @Z 33 aut.
A14 04      @1 School of Biological Sciences, The University of Queensland @2 Brisbane, Queensland 4072 @3 AUS @Z 4 aut. @Z 5 aut. @Z 7 aut. @Z 11 aut. @Z 14 aut. @Z 16 aut. @Z 20 aut. @Z 21 aut. @Z 22 aut. @Z 24 aut. @Z 25 aut. @Z 28 aut. @Z 32 aut.
A14 05      @1 Neuroscience Research Institute, University of California Santa Barbara @2 Santa Barbara, California 93106 @3 USA @Z 8 aut. @Z 30 aut.
A14 06      @1 Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies @2 La Jolla, California 92037 @3 USA @Z 9 aut. @Z 19 aut. @Z 31 aut.
A14 07      @1 Department of Ecology and Evolutionary Biology, Rice University, 6100 Main Street @2 Houston, Texas 77005 @3 USA @Z 12 aut.
A14 08      @1 Institut für Mikrobiologie und Genetik, Abteilung für Bioinformatik, Goldschmidtstr. 1 @2 37077 Göttingen @3 DEU @Z 13 aut.
A14 09      @1 Genome Center, University of California-Davis @2 Davis, California 95616 @3 USA @Z 15 aut.
A14 10      @1 Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara @2 Santa Barbara, California 93106 @3 USA @Z 17 aut. @Z 18 aut.
A14 11      @1 Department of Biological Sciences, University of Alberta @2 Edmonton, Alberta T6G 2E9 @3 CAN @Z 26 aut.
A14 12      @1 Development and Neurobiology program Institut Jacques Monod, UMR 7592 CNRS/Université Paris Diderot-Paris 7 @2 75205 Paris @3 FRA @Z 29 aut.
A20       @1 720-726
A21       @1 2010
A23 01      @0 ENG
A43 01      @1 INIST @2 142 @5 354000191754480130
A44       @0 0000 @1 © 2010 INIST-CNRS. All rights reserved.
A45       @0 48 ref.
A47 01  1    @0 10-0390536
A60       @1 P
A61       @0 A
A64 01  1    @0 Nature : (London)
A66 01      @0 GBR
C01 01    ENG  @0 Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.
C02 01  X    @0 002A07A
C03 01  X  FRE  @0 Génome @5 01
C03 01  X  ENG  @0 Genome @5 01
C03 01  X  SPA  @0 Genoma @5 01
C03 02  X  FRE  @0 Organisme benthique @5 02
C03 02  X  ENG  @0 Benthic organism @5 02
C03 02  X  SPA  @0 Organismo bénthico @5 02
C03 03  X  FRE  @0 Cycle évolutif @5 03
C03 03  X  ENG  @0 Life history @5 03
C03 03  X  SPA  @0 Ciclo evolutivo @5 03
C03 04  X  FRE  @0 Phylogenèse @5 04
C03 04  X  ENG  @0 Phylogeny @5 04
C03 04  X  SPA  @0 Filogénesis @5 04
C03 05  X  FRE  @0 Evolution biologique @5 05
C03 05  X  ENG  @0 Biological evolution @5 05
C03 05  X  SPA  @0 Evolución biológica @5 05
C03 06  X  FRE  @0 Complexité @5 06
C03 06  X  ENG  @0 Complexity @5 06
C03 06  X  SPA  @0 Complejidad @5 06
C03 07  X  FRE  @0 Règne animal @5 07
C03 07  X  ENG  @0 Animal kingdom @5 07
C03 07  X  SPA  @0 Reino animal @5 07
C03 08  X  FRE  @0 Porifera @2 NS @5 55
C03 08  X  ENG  @0 Porifera @2 NS @5 55
C03 08  X  SPA  @0 Porifera @2 NS @5 55
C03 09  X  FRE  @0 Amphimedon queenslandica @4 INC @5 87
C07 01  X  FRE  @0 Invertebrata @2 NS
C07 01  X  ENG  @0 Invertebrata @2 NS
C07 01  X  SPA  @0 Invertebrata @2 NS
N21       @1 249

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Pascal:10-0390536

Le document en format XML

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<title xml:lang="en" level="a">The Amphimedon queenslandica genome and the evolution of animal complexity</title>
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<term>Animal kingdom</term>
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<div type="abstract" xml:lang="en">Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.</div>
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<fC03 i1="03" i2="X" l="SPA">
<s0>Ciclo evolutivo</s0>
<s5>03</s5>
</fC03>
<fC03 i1="04" i2="X" l="FRE">
<s0>Phylogenèse</s0>
<s5>04</s5>
</fC03>
<fC03 i1="04" i2="X" l="ENG">
<s0>Phylogeny</s0>
<s5>04</s5>
</fC03>
<fC03 i1="04" i2="X" l="SPA">
<s0>Filogénesis</s0>
<s5>04</s5>
</fC03>
<fC03 i1="05" i2="X" l="FRE">
<s0>Evolution biologique</s0>
<s5>05</s5>
</fC03>
<fC03 i1="05" i2="X" l="ENG">
<s0>Biological evolution</s0>
<s5>05</s5>
</fC03>
<fC03 i1="05" i2="X" l="SPA">
<s0>Evolución biológica</s0>
<s5>05</s5>
</fC03>
<fC03 i1="06" i2="X" l="FRE">
<s0>Complexité</s0>
<s5>06</s5>
</fC03>
<fC03 i1="06" i2="X" l="ENG">
<s0>Complexity</s0>
<s5>06</s5>
</fC03>
<fC03 i1="06" i2="X" l="SPA">
<s0>Complejidad</s0>
<s5>06</s5>
</fC03>
<fC03 i1="07" i2="X" l="FRE">
<s0>Règne animal</s0>
<s5>07</s5>
</fC03>
<fC03 i1="07" i2="X" l="ENG">
<s0>Animal kingdom</s0>
<s5>07</s5>
</fC03>
<fC03 i1="07" i2="X" l="SPA">
<s0>Reino animal</s0>
<s5>07</s5>
</fC03>
<fC03 i1="08" i2="X" l="FRE">
<s0>Porifera</s0>
<s2>NS</s2>
<s5>55</s5>
</fC03>
<fC03 i1="08" i2="X" l="ENG">
<s0>Porifera</s0>
<s2>NS</s2>
<s5>55</s5>
</fC03>
<fC03 i1="08" i2="X" l="SPA">
<s0>Porifera</s0>
<s2>NS</s2>
<s5>55</s5>
</fC03>
<fC03 i1="09" i2="X" l="FRE">
<s0>Amphimedon queenslandica</s0>
<s4>INC</s4>
<s5>87</s5>
</fC03>
<fC07 i1="01" i2="X" l="FRE">
<s0>Invertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="01" i2="X" l="ENG">
<s0>Invertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="01" i2="X" l="SPA">
<s0>Invertebrata</s0>
<s2>NS</s2>
</fC07>
<fN21>
<s1>249</s1>
</fN21>
</pA>
</standard>
</inist>
</record>

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