AustralieFrV1, PascalFrancis, Curation, bibRecord, 002A63

High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia

Identifieur interne : 002A63 ( PascalFrancis/Curation ); précédent : 002A62; suivant : 002A64

High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia

Auteurs : Stephen Baker [Royaume-Uni, Viêt Nam] ; Kathryn Holt [Royaume-Uni] ; Esther Van De Vosse [Pays-Bas] ; Philippe Roumagnac [France] ; Sally Whitehead [Royaume-Uni] ; Emma King [Royaume-Uni] ; Philip Ewels [Royaume-Uni] ; Andrew Keniry [Royaume-Uni] ; Francois-Xavier Weill [France] ; Diane Lightfoot [Australie] ; Jaap T. Van Dissel [Pays-Bas] ; Kenneth E. Sanderson [Canada] ; Jeremy Farrar [Viêt Nam] ; Mark Achtman [Irlande (pays)] ; Panagiotis Deloukas [Royaume-Uni] ; Gordon Dougan [Royaume-Uni]

Source :

Journal of clinical microbiology : (Print) [ 0095-1137 ] ; 2008.

RBID : Pascal:08-0251112

Descripteurs français

Pascal (Inist)
- Salmonella typhi, Criblage haut débit, Génotype, Typage, Haplotype, Pathotype, Indonésie, Microbiologie.
Wicri :
- geographic : Indonésie.

English descriptors

KwdEn :
- Genotype, Haplotype, High throughput screening, Indonesia, Microbiology, Pathotype, Salmonella typhi, Typing.

Abstract

High-throughput epidemiological typing systems that provide phylogenetic and genotypic information are beneficial for tracking bacterial pathogens in the field. The incidence of Salmonella enterica serovar Typhi infection in Indonesia is high and is associated with atypical phenotypic traits such as expression of the j and the z66 flagellum antigens. Utilizing a high-throughput genotyping platform to investigate known nucleotide polymorphisms dispersed around the genome, we determined the haplotypes of 140 serovar Typhi isolates associated with Indonesia. We identified nine distinct serovar Typhi haplotypes circulating in Indonesia for more than 30 years, with eight of these present in a single Jakarta suburb within a 2-year period. One dominant haplotype, H59, is associated with j and z66 flagellum expression, representing a potential pathotype unique to Indonesia. Phylogenetic analysis suggests that H59 z66⁺,j⁺ isolates emerged relatively recently in terms of the origin of serovar Typhi and are geographically restricted. These data demonstrate the potential of high-throughput genotyping platforms for analyzing serovar Typhi populations in the field. The study also provides insight into the evolution of serovar Typhi and demonstrates the value of a molecular epidemiological technique that is exchangeable, that is internet friendly, and that has global utility.

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C01	`01`		`ENG`	@0 High-throughput epidemiological typing systems that provide phylogenetic and genotypic information are beneficial for tracking bacterial pathogens in the field. The incidence of Salmonella enterica serovar Typhi infection in Indonesia is high and is associated with atypical phenotypic traits such as expression of the j and the z66 flagellum antigens. Utilizing a high-throughput genotyping platform to investigate known nucleotide polymorphisms dispersed around the genome, we determined the haplotypes of 140 serovar Typhi isolates associated with Indonesia. We identified nine distinct serovar Typhi haplotypes circulating in Indonesia for more than 30 years, with eight of these present in a single Jakarta suburb within a 2-year period. One dominant haplotype, H59, is associated with j and z66 flagellum expression, representing a potential pathotype unique to Indonesia. Phylogenetic analysis suggests that H59 z66⁺,j⁺ isolates emerged relatively recently in terms of the origin of serovar Typhi and are geographically restricted. These data demonstrate the potential of high-throughput genotyping platforms for analyzing serovar Typhi populations in the field. The study also provides insight into the evolution of serovar Typhi and demonstrates the value of a molecular epidemiological technique that is exchangeable, that is internet friendly, and that has global utility.
C02	`01`	`X`		`@0 002A05B15`
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C07	`02`	`X`	`FRE`	`@0 Bactérie`
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N21				`@1 162`
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Links toward previous steps (curation, corpus...)

to stream PascalFrancis, to step Corpus: Pour aller vers cette notice dans l'étape Curation :003584

Links to Exploration step

Pascal:08-0251112

Le document en format XML

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<author><name sortKey="Whitehead, Sally" sort="Whitehead, Sally" uniqKey="Whitehead S" first="Sally" last="Whitehead">Sally Whitehead</name>
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<author><name sortKey="Ewels, Philip" sort="Ewels, Philip" uniqKey="Ewels P" first="Philip" last="Ewels">Philip Ewels</name>
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<author><name sortKey="Keniry, Andrew" sort="Keniry, Andrew" uniqKey="Keniry A" first="Andrew" last="Keniry">Andrew Keniry</name>
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<author><name sortKey="Lightfoot, Diane" sort="Lightfoot, Diane" uniqKey="Lightfoot D" first="Diane" last="Lightfoot">Diane Lightfoot</name>
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<author><name sortKey="Van Dissel, Jaap T" sort="Van Dissel, Jaap T" uniqKey="Van Dissel J" first="Jaap T." last="Van Dissel">Jaap T. Van Dissel</name>
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<author><name sortKey="Sanderson, Kenneth E" sort="Sanderson, Kenneth E" uniqKey="Sanderson K" first="Kenneth E." last="Sanderson">Kenneth E. Sanderson</name>
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<author><name sortKey="Farrar, Jeremy" sort="Farrar, Jeremy" uniqKey="Farrar J" first="Jeremy" last="Farrar">Jeremy Farrar</name>
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<author><name sortKey="Achtman, Mark" sort="Achtman, Mark" uniqKey="Achtman M" first="Mark" last="Achtman">Mark Achtman</name>
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</affiliation>
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<author><name sortKey="Deloukas, Panagiotis" sort="Deloukas, Panagiotis" uniqKey="Deloukas P" first="Panagiotis" last="Deloukas">Panagiotis Deloukas</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
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</author>
<author><name sortKey="Dougan, Gordon" sort="Dougan, Gordon" uniqKey="Dougan G" first="Gordon" last="Dougan">Gordon Dougan</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia</title>
<author><name sortKey="Baker, Stephen" sort="Baker, Stephen" uniqKey="Baker S" first="Stephen" last="Baker">Stephen Baker</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
<s2>Hinxton, Cambridgeshire</s2>
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<author><name sortKey="Holt, Kathryn" sort="Holt, Kathryn" uniqKey="Holt K" first="Kathryn" last="Holt">Kathryn Holt</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
<s2>Hinxton, Cambridgeshire</s2>
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</author>
<author><name sortKey="Van De Vosse, Esther" sort="Van De Vosse, Esther" uniqKey="Van De Vosse E" first="Esther" last="Van De Vosse">Esther Van De Vosse</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Infectious Diseases, Leiden University Medical Centre</s1>
<s2>Leiden</s2>
<s3>NLD</s3>
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<author><name sortKey="Roumagnac, Philippe" sort="Roumagnac, Philippe" uniqKey="Roumagnac P" first="Philippe" last="Roumagnac">Philippe Roumagnac</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Centre National de la Recherche Scientifique</s1>
<s2>Saint Paul Lez Durance</s2>
<s3>FRA</s3>
<sZ>4 aut.</sZ>
</inist:fA14>
<country>France</country>
</affiliation>
</author>
<author><name sortKey="Whitehead, Sally" sort="Whitehead, Sally" uniqKey="Whitehead S" first="Sally" last="Whitehead">Sally Whitehead</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
<s2>Hinxton, Cambridgeshire</s2>
<s3>GBR</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>5 aut.</sZ>
<sZ>6 aut.</sZ>
<sZ>7 aut.</sZ>
<sZ>8 aut.</sZ>
<sZ>15 aut.</sZ>
<sZ>16 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
</affiliation>
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<author><name sortKey="King, Emma" sort="King, Emma" uniqKey="King E" first="Emma" last="King">Emma King</name>
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<author><name sortKey="Deloukas, Panagiotis" sort="Deloukas, Panagiotis" uniqKey="Deloukas P" first="Panagiotis" last="Deloukas">Panagiotis Deloukas</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
<s2>Hinxton, Cambridgeshire</s2>
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<sZ>6 aut.</sZ>
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<sZ>15 aut.</sZ>
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<author><name sortKey="Dougan, Gordon" sort="Dougan, Gordon" uniqKey="Dougan G" first="Gordon" last="Dougan">Gordon Dougan</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>The Wellcome Trust Sanger Institute</s1>
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<series><title level="j" type="main">Journal of clinical microbiology : (Print)</title>
<title level="j" type="abbreviated">J. clin. microbiol. : (Print)</title>
<idno type="ISSN">0095-1137</idno>
<imprint><date when="2008">2008</date>
</imprint>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genotype</term>
<term>Haplotype</term>
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<term>Salmonella typhi</term>
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<front><div type="abstract" xml:lang="en">High-throughput epidemiological typing systems that provide phylogenetic and genotypic information are beneficial for tracking bacterial pathogens in the field. The incidence of Salmonella enterica serovar Typhi infection in Indonesia is high and is associated with atypical phenotypic traits such as expression of the j and the z66 flagellum antigens. Utilizing a high-throughput genotyping platform to investigate known nucleotide polymorphisms dispersed around the genome, we determined the haplotypes of 140 serovar Typhi isolates associated with Indonesia. We identified nine distinct serovar Typhi haplotypes circulating in Indonesia for more than 30 years, with eight of these present in a single Jakarta suburb within a 2-year period. One dominant haplotype, H59, is associated with j and z66 flagellum expression, representing a potential pathotype unique to Indonesia. Phylogenetic analysis suggests that H59 z66<sup>+</sup>
,j<sup>+</sup>
 isolates emerged relatively recently in terms of the origin of serovar Typhi and are geographically restricted. These data demonstrate the potential of high-throughput genotyping platforms for analyzing serovar Typhi populations in the field. The study also provides insight into the evolution of serovar Typhi and demonstrates the value of a molecular epidemiological technique that is exchangeable, that is internet friendly, and that has global utility.</div>
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<fC01 i1="01" l="ENG"><s0>High-throughput epidemiological typing systems that provide phylogenetic and genotypic information are beneficial for tracking bacterial pathogens in the field. The incidence of Salmonella enterica serovar Typhi infection in Indonesia is high and is associated with atypical phenotypic traits such as expression of the j and the z66 flagellum antigens. Utilizing a high-throughput genotyping platform to investigate known nucleotide polymorphisms dispersed around the genome, we determined the haplotypes of 140 serovar Typhi isolates associated with Indonesia. We identified nine distinct serovar Typhi haplotypes circulating in Indonesia for more than 30 years, with eight of these present in a single Jakarta suburb within a 2-year period. One dominant haplotype, H59, is associated with j and z66 flagellum expression, representing a potential pathotype unique to Indonesia. Phylogenetic analysis suggests that H59 z66<sup>+</sup>
,j<sup>+</sup>
 isolates emerged relatively recently in terms of the origin of serovar Typhi and are geographically restricted. These data demonstrate the potential of high-throughput genotyping platforms for analyzing serovar Typhi populations in the field. The study also provides insight into the evolution of serovar Typhi and demonstrates the value of a molecular epidemiological technique that is exchangeable, that is internet friendly, and that has global utility.</s0>
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High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia

High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia

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