AustralieFrV1, PascalFrancis, Curation, bibRecord, 001814

Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov.

Identifieur interne : 001814 ( PascalFrancis/Curation ); précédent : 001813; suivant : 001815

Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov.

Auteurs : Elena P. Ivanova [Australie, Russie] ; Sébastien Flavier [France] ; Richard Christen [France]

Source :

International journal of systematic and evolutionary microbiology : (Print) [ 1466-5026 ] ; 2004.

RBID : Pascal:05-0305018

Descripteurs français

Pascal (Inist)
- Alteromonas, RNA 16S, Oligonucléotide, Arbre phylogénétique, Gène domestique, Structure secondaire, Description, Phylogenèse, Espagne, Etats Unis, Gène gyrB, Gène rpoB, Pseudoalteromonadaceae, Colwelliaceae, Famille nouvelle.
Wicri :
- geographic : Espagne.

English descriptors

KwdEn :
- 16S-RNA, Alteromonas, Description, Housekeeping gene, Oligonucleotide, Phylogenetic tree, Phylogeny, Secondary structure, Spain, United States.

Abstract

The phylogenetic relationships among marine Alteromonas-like bacteria of the genera Alteromonas, Pseudoalteromonas, Glaciecola, Thalassomonas, Colwellia, Idiomarina, Oceanimonas, Oceanisphaera, Shewanella, Moritella, Ferrimonas, Psychromonas and several other genera of the 'Gammaproteobacteria' were studied. Results of 16S rRNA gene sequence analyses revealed that some members of these genera formed several coherent groups at the family level. Characteristic signature oligonucleotides for studied taxa were defined. Signature positions are divided into three classes: (i) single compensatory mutations, (ii) double compensatory mutations and (iii) mutations affecting nucleotides not paired in the secondary structure. The 16S rRNA gene sequence similarity level within genera was 93% or above. This value can be a useful additional criterion for genus discrimination. On the basis of this work and previous polyphasic taxonomic studies, the circumscription of the family Alteromonadaceae is limited to the genera Alteromonas and Glaciecola and the creation is proposed of the families Pseudoalteromonadaceae fam. nov. to accommodate bacteria of the genera Pseudoalteromonas and Algicola gen. nov. (formerly Pseudoalteromonas bacteriolytica) and Colwelliaceae fam. nov. to accommodate bacteria of the genera Colwellia and Thalassomonas. Bacteria of the genera Oceanimonas and Oceanisphaera formed a robust cluster and shared common signature oligonucleotides. Because of deep branching and lack of association with any other genus, the following families are proposed that include single genera: Idiomarinaceae fam. nov., Psychromonadaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov. and Shewanellaceae fam. nov. Finally, this study also revealed that [Hyphomicrobium] indicum should be reclassified as Photobacterium indicum comb. nov.

A01	`01`	`1`		`@0 1466-5026`
A03		`1`		`@0 Int. j. syst. evol. microbiol. : (Print)`
A05				`@2 54`
A06				`@3 p.5`
A08	`01`	`1`	`ENG`	`@1 Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov.`
A11	`01`	`1`		`@1 IVANOVA (Elena P.)`
A11	`02`	`1`		`@1 FLAVIER (Sébastien)`
A11	`03`	`1`		`@1 CHRISTEN (Richard)`
A14	`01`			`@1 Industrial Research Institute Swinburne, Swinburne University of Technology, PO Box 218 @2 Hawthorn, Vic 3122 @3 AUS @Z 1 aut.`
A14	`02`			`@1 Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159 @2 690022 Vladivostok @3 RUS @Z 1 aut.`
A14	`03`			`@1 UMR 6543 CNRS - Université de Nice Sophia Antipolis, Centre de Biochimie, Parc Valrose @2 06108 Nice @3 FRA @Z 2 aut. @Z 3 aut.`
A20				`@1 1773-1788`
A21				`@1 2004`
A23	`01`			`@0 ENG`
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A64	`01`	`1`		`@0 International journal of systematic and evolutionary microbiology : (Print)`
A66	`01`			`@0 GBR`
C01	`01`		`ENG`	@0 The phylogenetic relationships among marine Alteromonas-like bacteria of the genera Alteromonas, Pseudoalteromonas, Glaciecola, Thalassomonas, Colwellia, Idiomarina, Oceanimonas, Oceanisphaera, Shewanella, Moritella, Ferrimonas, Psychromonas and several other genera of the 'Gammaproteobacteria' were studied. Results of 16S rRNA gene sequence analyses revealed that some members of these genera formed several coherent groups at the family level. Characteristic signature oligonucleotides for studied taxa were defined. Signature positions are divided into three classes: (i) single compensatory mutations, (ii) double compensatory mutations and (iii) mutations affecting nucleotides not paired in the secondary structure. The 16S rRNA gene sequence similarity level within genera was 93% or above. This value can be a useful additional criterion for genus discrimination. On the basis of this work and previous polyphasic taxonomic studies, the circumscription of the family Alteromonadaceae is limited to the genera Alteromonas and Glaciecola and the creation is proposed of the families Pseudoalteromonadaceae fam. nov. to accommodate bacteria of the genera Pseudoalteromonas and Algicola gen. nov. (formerly Pseudoalteromonas bacteriolytica) and Colwelliaceae fam. nov. to accommodate bacteria of the genera Colwellia and Thalassomonas. Bacteria of the genera Oceanimonas and Oceanisphaera formed a robust cluster and shared common signature oligonucleotides. Because of deep branching and lack of association with any other genus, the following families are proposed that include single genera: Idiomarinaceae fam. nov., Psychromonadaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov. and Shewanellaceae fam. nov. Finally, this study also revealed that [Hyphomicrobium] indicum should be reclassified as Photobacterium indicum comb. nov.
C02	`01`	`X`		`@0 002A05B02`
C03	`01`	`X`	`FRE`	`@0 Alteromonas @2 NS @5 01`
C03	`01`	`X`	`ENG`	`@0 Alteromonas @2 NS @5 01`
C03	`01`	`X`	`SPA`	`@0 Alteromonas @2 NS @5 01`
C03	`02`	`X`	`FRE`	`@0 RNA 16S @5 05`
C03	`02`	`X`	`ENG`	`@0 16S-RNA @5 05 @6 «16S-»RNA`
C03	`02`	`X`	`SPA`	`@0 ARN 16S @5 05`
C03	`03`	`X`	`FRE`	`@0 Oligonucléotide @5 06`
C03	`03`	`X`	`ENG`	`@0 Oligonucleotide @5 06`
C03	`03`	`X`	`SPA`	`@0 Oligonucleótido @5 06`
C03	`04`	`X`	`FRE`	`@0 Arbre phylogénétique @5 07`
C03	`04`	`X`	`ENG`	`@0 Phylogenetic tree @5 07`
C03	`04`	`X`	`SPA`	`@0 Arbol filogenético @5 07`
C03	`05`	`X`	`FRE`	`@0 Gène domestique @5 08`
C03	`05`	`X`	`ENG`	`@0 Housekeeping gene @5 08`
C03	`05`	`X`	`SPA`	`@0 Gen doméstico @5 08`
C03	`06`	`X`	`FRE`	`@0 Structure secondaire @5 09`
C03	`06`	`X`	`ENG`	`@0 Secondary structure @5 09`
C03	`06`	`X`	`SPA`	`@0 Estructura secundaria @5 09`
C03	`07`	`X`	`FRE`	`@0 Description @5 10`
C03	`07`	`X`	`ENG`	`@0 Description @5 10`
C03	`07`	`X`	`SPA`	`@0 Descripción @5 10`
C03	`08`	`X`	`FRE`	`@0 Phylogenèse @5 11`
C03	`08`	`X`	`ENG`	`@0 Phylogeny @5 11`
C03	`08`	`X`	`SPA`	`@0 Filogénesis @5 11`
C03	`09`	`X`	`FRE`	`@0 Espagne @2 NG @5 67`
C03	`09`	`X`	`ENG`	`@0 Spain @2 NG @5 67`
C03	`09`	`X`	`SPA`	`@0 España @2 NG @5 67`
C03	`10`	`X`	`FRE`	`@0 Etats Unis @2 NG @5 68`
C03	`10`	`X`	`ENG`	`@0 United States @2 NG @5 68`
C03	`10`	`X`	`SPA`	`@0 Estados Unidos @2 NG @5 68`
C03	`11`	`X`	`FRE`	`@0 Gène gyrB @4 INC @5 79`
C03	`12`	`X`	`FRE`	`@0 Gène rpoB @4 INC @5 80`
C03	`13`	`X`	`FRE`	`@0 Pseudoalteromonadaceae @2 NS @4 INC @5 91`
C03	`14`	`X`	`FRE`	`@0 Colwelliaceae @2 NS @4 INC @5 92`
C03	`15`	`X`	`FRE`	`@0 Famille nouvelle @4 INC @5 93`
C07	`01`	`X`	`FRE`	`@0 Bactérie`
C07	`01`	`X`	`ENG`	`@0 Bacteria`
C07	`01`	`X`	`SPA`	`@0 Bacteria`
C07	`02`	`X`	`FRE`	`@0 Systématique @5 43`
C07	`02`	`X`	`ENG`	`@0 Taxonomy @5 43`
C07	`02`	`X`	`SPA`	`@0 Sistemática @5 43`
C07	`03`	`X`	`FRE`	`@0 Europe @2 NG`
C07	`03`	`X`	`ENG`	`@0 Europe @2 NG`
C07	`03`	`X`	`SPA`	`@0 Europa @2 NG`
C07	`04`	`X`	`FRE`	`@0 Amérique du Nord @2 NG`
C07	`04`	`X`	`ENG`	`@0 North America @2 NG`
C07	`04`	`X`	`SPA`	`@0 America del norte @2 NG`
C07	`05`	`X`	`FRE`	`@0 Amérique @2 NG`
C07	`05`	`X`	`ENG`	`@0 America @2 NG`
C07	`05`	`X`	`SPA`	`@0 America @2 NG`
N21				`@1 213`
N44	`01`			`@1 PSI`
N82				`@1 PSI`

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Pascal:05-0305018

Le document en format XML

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<front><div type="abstract" xml:lang="en">The phylogenetic relationships among marine Alteromonas-like bacteria of the genera Alteromonas, Pseudoalteromonas, Glaciecola, Thalassomonas, Colwellia, Idiomarina, Oceanimonas, Oceanisphaera, Shewanella, Moritella, Ferrimonas, Psychromonas and several other genera of the 'Gammaproteobacteria' were studied. Results of 16S rRNA gene sequence analyses revealed that some members of these genera formed several coherent groups at the family level. Characteristic signature oligonucleotides for studied taxa were defined. Signature positions are divided into three classes: (i) single compensatory mutations, (ii) double compensatory mutations and (iii) mutations affecting nucleotides not paired in the secondary structure. The 16S rRNA gene sequence similarity level within genera was 93% or above. This value can be a useful additional criterion for genus discrimination. On the basis of this work and previous polyphasic taxonomic studies, the circumscription of the family Alteromonadaceae is limited to the genera Alteromonas and Glaciecola and the creation is proposed of the families Pseudoalteromonadaceae fam. nov. to accommodate bacteria of the genera Pseudoalteromonas and Algicola gen. nov. (formerly Pseudoalteromonas bacteriolytica) and Colwelliaceae fam. nov. to accommodate bacteria of the genera Colwellia and Thalassomonas. Bacteria of the genera Oceanimonas and Oceanisphaera formed a robust cluster and shared common signature oligonucleotides. Because of deep branching and lack of association with any other genus, the following families are proposed that include single genera: Idiomarinaceae fam. nov., Psychromonadaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov. and Shewanellaceae fam. nov. Finally, this study also revealed that [Hyphomicrobium] indicum should be reclassified as Photobacterium indicum comb. nov.</div>
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<fC01 i1="01" l="ENG"><s0>The phylogenetic relationships among marine Alteromonas-like bacteria of the genera Alteromonas, Pseudoalteromonas, Glaciecola, Thalassomonas, Colwellia, Idiomarina, Oceanimonas, Oceanisphaera, Shewanella, Moritella, Ferrimonas, Psychromonas and several other genera of the 'Gammaproteobacteria' were studied. Results of 16S rRNA gene sequence analyses revealed that some members of these genera formed several coherent groups at the family level. Characteristic signature oligonucleotides for studied taxa were defined. Signature positions are divided into three classes: (i) single compensatory mutations, (ii) double compensatory mutations and (iii) mutations affecting nucleotides not paired in the secondary structure. The 16S rRNA gene sequence similarity level within genera was 93% or above. This value can be a useful additional criterion for genus discrimination. On the basis of this work and previous polyphasic taxonomic studies, the circumscription of the family Alteromonadaceae is limited to the genera Alteromonas and Glaciecola and the creation is proposed of the families Pseudoalteromonadaceae fam. nov. to accommodate bacteria of the genera Pseudoalteromonas and Algicola gen. nov. (formerly Pseudoalteromonas bacteriolytica) and Colwelliaceae fam. nov. to accommodate bacteria of the genera Colwellia and Thalassomonas. Bacteria of the genera Oceanimonas and Oceanisphaera formed a robust cluster and shared common signature oligonucleotides. Because of deep branching and lack of association with any other genus, the following families are proposed that include single genera: Idiomarinaceae fam. nov., Psychromonadaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov. and Shewanellaceae fam. nov. Finally, this study also revealed that [Hyphomicrobium] indicum should be reclassified as Photobacterium indicum comb. nov.</s0>
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<fC03 i1="01" i2="X" l="SPA"><s0>Alteromonas</s0>
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<s5>06</s5>
</fC03>
<fC03 i1="03" i2="X" l="ENG"><s0>Oligonucleotide</s0>
<s5>06</s5>
</fC03>
<fC03 i1="03" i2="X" l="SPA"><s0>Oligonucleótido</s0>
<s5>06</s5>
</fC03>
<fC03 i1="04" i2="X" l="FRE"><s0>Arbre phylogénétique</s0>
<s5>07</s5>
</fC03>
<fC03 i1="04" i2="X" l="ENG"><s0>Phylogenetic tree</s0>
<s5>07</s5>
</fC03>
<fC03 i1="04" i2="X" l="SPA"><s0>Arbol filogenético</s0>
<s5>07</s5>
</fC03>
<fC03 i1="05" i2="X" l="FRE"><s0>Gène domestique</s0>
<s5>08</s5>
</fC03>
<fC03 i1="05" i2="X" l="ENG"><s0>Housekeeping gene</s0>
<s5>08</s5>
</fC03>
<fC03 i1="05" i2="X" l="SPA"><s0>Gen doméstico</s0>
<s5>08</s5>
</fC03>
<fC03 i1="06" i2="X" l="FRE"><s0>Structure secondaire</s0>
<s5>09</s5>
</fC03>
<fC03 i1="06" i2="X" l="ENG"><s0>Secondary structure</s0>
<s5>09</s5>
</fC03>
<fC03 i1="06" i2="X" l="SPA"><s0>Estructura secundaria</s0>
<s5>09</s5>
</fC03>
<fC03 i1="07" i2="X" l="FRE"><s0>Description</s0>
<s5>10</s5>
</fC03>
<fC03 i1="07" i2="X" l="ENG"><s0>Description</s0>
<s5>10</s5>
</fC03>
<fC03 i1="07" i2="X" l="SPA"><s0>Descripción</s0>
<s5>10</s5>
</fC03>
<fC03 i1="08" i2="X" l="FRE"><s0>Phylogenèse</s0>
<s5>11</s5>
</fC03>
<fC03 i1="08" i2="X" l="ENG"><s0>Phylogeny</s0>
<s5>11</s5>
</fC03>
<fC03 i1="08" i2="X" l="SPA"><s0>Filogénesis</s0>
<s5>11</s5>
</fC03>
<fC03 i1="09" i2="X" l="FRE"><s0>Espagne</s0>
<s2>NG</s2>
<s5>67</s5>
</fC03>
<fC03 i1="09" i2="X" l="ENG"><s0>Spain</s0>
<s2>NG</s2>
<s5>67</s5>
</fC03>
<fC03 i1="09" i2="X" l="SPA"><s0>España</s0>
<s2>NG</s2>
<s5>67</s5>
</fC03>
<fC03 i1="10" i2="X" l="FRE"><s0>Etats Unis</s0>
<s2>NG</s2>
<s5>68</s5>
</fC03>
<fC03 i1="10" i2="X" l="ENG"><s0>United States</s0>
<s2>NG</s2>
<s5>68</s5>
</fC03>
<fC03 i1="10" i2="X" l="SPA"><s0>Estados Unidos</s0>
<s2>NG</s2>
<s5>68</s5>
</fC03>
<fC03 i1="11" i2="X" l="FRE"><s0>Gène gyrB</s0>
<s4>INC</s4>
<s5>79</s5>
</fC03>
<fC03 i1="12" i2="X" l="FRE"><s0>Gène rpoB</s0>
<s4>INC</s4>
<s5>80</s5>
</fC03>
<fC03 i1="13" i2="X" l="FRE"><s0>Pseudoalteromonadaceae</s0>
<s2>NS</s2>
<s4>INC</s4>
<s5>91</s5>
</fC03>
<fC03 i1="14" i2="X" l="FRE"><s0>Colwelliaceae</s0>
<s2>NS</s2>
<s4>INC</s4>
<s5>92</s5>
</fC03>
<fC03 i1="15" i2="X" l="FRE"><s0>Famille nouvelle</s0>
<s4>INC</s4>
<s5>93</s5>
</fC03>
<fC07 i1="01" i2="X" l="FRE"><s0>Bactérie</s0>
</fC07>
<fC07 i1="01" i2="X" l="ENG"><s0>Bacteria</s0>
</fC07>
<fC07 i1="01" i2="X" l="SPA"><s0>Bacteria</s0>
</fC07>
<fC07 i1="02" i2="X" l="FRE"><s0>Systématique</s0>
<s5>43</s5>
</fC07>
<fC07 i1="02" i2="X" l="ENG"><s0>Taxonomy</s0>
<s5>43</s5>
</fC07>
<fC07 i1="02" i2="X" l="SPA"><s0>Sistemática</s0>
<s5>43</s5>
</fC07>
<fC07 i1="03" i2="X" l="FRE"><s0>Europe</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="03" i2="X" l="ENG"><s0>Europe</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="03" i2="X" l="SPA"><s0>Europa</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="04" i2="X" l="FRE"><s0>Amérique du Nord</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="04" i2="X" l="ENG"><s0>North America</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="04" i2="X" l="SPA"><s0>America del norte</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="05" i2="X" l="FRE"><s0>Amérique</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="05" i2="X" l="ENG"><s0>America</s0>
<s2>NG</s2>
</fC07>
<fC07 i1="05" i2="X" l="SPA"><s0>America</s0>
<s2>NG</s2>
</fC07>
<fN21><s1>213</s1>
</fN21>
<fN44 i1="01"><s1>PSI</s1>
</fN44>
<fN82><s1>PSI</s1>
</fN82>
</pA>
</standard>
</inist>
</record>

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   |wiki=    Wicri/Asie
   |area=    AustralieFrV1
   |flux=    PascalFrancis
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   |texte=   Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov.
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	Serveur d'exploration sur les relations entre la France et l'Australie
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Serveur d'exploration sur les relations entre la France et l'Australie