Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester
Identifieur interne : 000379 ( PascalFrancis/Curation ); précédent : 000378; suivant : 000380Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester
Auteurs : T. Mechichi [France] ; M.-L. Fardeau [France] ; M. Labat [France] ; J.-L. Garcia [France] ; F. Verhe [France] ; B. K. C. Patel [Australie]Source :
- International journal of systematic and evolutionary microbiology : (Print) [ 1466-5026 ] ; 2000.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Olive.
English descriptors
- KwdEn :
Abstract
A new peptide-degrading, strictly anaerobic bacterium, designated strain TMC4T, was isolated from an olive mill wastewater treatment digester. Cells of strain TMC4T were motile, rod-shaped (5-10 x 0.6-1.2 μm), stained Gram-positive and formed terminal to subterminal spores that distended the cells. Optimal growth occurred at 37 °C and pH 7 in an anaerobic basal medium containing 0.5% Casamino acids. Arginine, lysine, cysteine, methionine, histidine, serine, isoleucine, yeast extract, peptone, Biotrypcase, gelatin and crotonate also supported growth, but not carbohydrates, organic acids or alcohols. The end-products of degradation were: acetate and butyrate from lysine and crotonate; acetate, butyrate, H2 and CO2 from Biotrypcase, gelatin and peptone; acetate, alanine, H2 and CO2 from cysteine; acetate, H2 and CO2 from serine, cysteine and yeast extract; acetate and formate from histidine; propionate from methionine; methyl 2-butyrate, H2 and CO2 from isoleucine; acetate and ethanol from arginine; and acetate, propionate, butyrate, methyl 2-butyrate, H2 and CO2 from Casamino acids. The DNA G+C content of strain TMC4T was 31 mol%. Phylogeny based on 16S rRNA sequence analysis showed that strain TMC4T was a member of the low-G+C-content Gram-positive genus Clostridium, with the closest relative being Clostridium pascui (sequence similarity of 96 %). Due to considerable differences in genomic and phenotypic properties between strain TMC4T and those of its nearest relative, strain TMC4T is proposed as a new species of the genus Clostridium, Clostridium peptidivorans sp. nov. Strain TMC4T has been deposited in the DSMZ as strain DSM 12505T.
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Patel</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science, Griffith University</s1><s2>Brisbane, Queensland 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ></inist:fA14><country>Australie</country></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">INIST</idno><idno type="inist">00-0488347</idno><date when="2000">2000</date><idno type="stanalyst">PASCAL 00-0488347 INIST</idno><idno type="RBID">Pascal:00-0488347</idno><idno type="wicri:Area/PascalFrancis/Corpus">005D91</idno><idno type="wicri:Area/PascalFrancis/Curation">000379</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester</title><author><name sortKey="Mechichi, T" sort="Mechichi, T" uniqKey="Mechichi T" first="T." last="Mechichi">T. Mechichi</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratoire IRD de Microbiologie, University de Provence, CESB/ESIL, Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>France</country></affiliation></author><author><name sortKey="Fardeau, M L" sort="Fardeau, M L" uniqKey="Fardeau M" first="M.-L." last="Fardeau">M.-L. Fardeau</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratoire IRD de Microbiologie, University de Provence, CESB/ESIL, Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>France</country></affiliation></author><author><name sortKey="Labat, M" sort="Labat, M" uniqKey="Labat M" first="M." last="Labat">M. Labat</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratoire IRD de Microbiologie, University de Provence, CESB/ESIL, Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>France</country></affiliation></author><author><name sortKey="Garcia, J L" sort="Garcia, J L" uniqKey="Garcia J" first="J.-L." last="Garcia">J.-L. Garcia</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratoire IRD de Microbiologie, University de Provence, CESB/ESIL, Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>France</country></affiliation></author><author><name sortKey="Verhe, F" sort="Verhe, F" uniqKey="Verhe F" first="F." last="Verhe">F. Verhe</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratoire IRD de Microbiologie, University de Provence, CESB/ESIL, Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>France</country></affiliation></author><author><name sortKey="Patel, B K C" sort="Patel, B K C" uniqKey="Patel B" first="B. K. C." last="Patel">B. K. C. Patel</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science, Griffith University</s1><s2>Brisbane, Queensland 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ></inist:fA14><country>Australie</country></affiliation></author></analytic><series><title level="j" type="main">International journal of systematic and evolutionary microbiology : (Print)</title><title level="j" type="abbreviated">Int. j. syst. evol. microbiol. : (Print)</title><idno type="ISSN">1466-5026</idno><imprint><date when="2000">2000</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">International journal of systematic and evolutionary microbiology : (Print)</title><title level="j" type="abbreviated">Int. j. syst. evol. microbiol. : (Print)</title><idno type="ISSN">1466-5026</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Characterization</term><term>Clostridium</term><term>Description</term><term>Fermentation</term><term>Fermenter</term><term>Genotype</term><term>New species</term><term>Olive</term><term>Peptides</term><term>Phenotype</term><term>Phylogeny</term><term>Waste water purification</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Clostridium</term><term>Espèce nouvelle</term><term>Olive</term><term>Epuration eau usée</term><term>Fermenteur</term><term>Caractérisation</term><term>Fermentation</term><term>Peptide</term><term>Phénotype</term><term>Génotype</term><term>Phylogenèse</term><term>Description</term><term>Clostridium peptidivorans</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Olive</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A new peptide-degrading, strictly anaerobic bacterium, designated strain TMC4<sup>T</sup>, was isolated from an olive mill wastewater treatment digester. Cells of strain TMC4T were motile, rod-shaped (5-10 x 0.6-1.2 μm), stained Gram-positive and formed terminal to subterminal spores that distended the cells. Optimal growth occurred at 37 °C and pH 7 in an anaerobic basal medium containing 0.5% Casamino acids. Arginine, lysine, cysteine, methionine, histidine, serine, isoleucine, yeast extract, peptone, Biotrypcase, gelatin and crotonate also supported growth, but not carbohydrates, organic acids or alcohols. The end-products of degradation were: acetate and butyrate from lysine and crotonate; acetate, butyrate, H<sub>2</sub> and CO<sub>2</sub> from Biotrypcase, gelatin and peptone; acetate, alanine, H<sub>2</sub> and CO<sub>2</sub> from cysteine; acetate, H<sub>2</sub> and CO<sub>2</sub> from serine, cysteine and yeast extract; acetate and formate from histidine; propionate from methionine; methyl 2-butyrate, H<sub>2</sub> and CO<sub>2</sub> from isoleucine; acetate and ethanol from arginine; and acetate, propionate, butyrate, methyl 2-butyrate, H<sub>2</sub> and CO<sub>2</sub> from Casamino acids. The DNA G+C content of strain TMC4<sup>T</sup> was 31 mol%. Phylogeny based on 16S rRNA sequence analysis showed that strain TMC4T was a member of the low-G+C-content Gram-positive genus Clostridium, with the closest relative being Clostridium pascui (sequence similarity of 96 %). Due to considerable differences in genomic and phenotypic properties between strain TMC4T and those of its nearest relative, strain TMC4T is proposed as a new species of the genus Clostridium, Clostridium peptidivorans sp. nov. Strain TMC4<sup>T</sup> has been deposited in the DSMZ as strain DSM 12505T.</div></front></TEI><inist><standard h6="B"><pA><fA01 i1="01" i2="1"><s0>1466-5026</s0></fA01><fA03 i2="1"><s0>Int. j. syst. evol. microbiol. : (Print)</s0></fA03><fA05><s2>50</s2></fA05><fA06><s2>3</s2><s3>PART3</s3></fA06><fA08 i1="01" i2="1" l="ENG"><s1>Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester</s1></fA08><fA11 i1="01" i2="1"><s1>MECHICHI (T.)</s1></fA11><fA11 i1="02" i2="1"><s1>FARDEAU (M.-L.)</s1></fA11><fA11 i1="03" i2="1"><s1>LABAT (M.)</s1></fA11><fA11 i1="04" i2="1"><s1>GARCIA (J.-L.)</s1></fA11><fA11 i1="05" i2="1"><s1>VERHE (F.)</s1></fA11><fA11 i1="06" i2="1"><s1>PATEL (B. K. C.)</s1></fA11><fA14 i1="01"><s1>Laboratoire IRD de Microbiologie, University de Provence, CESB/ESIL, Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>5 aut.</sZ></fA14><fA14 i1="02"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science, Griffith University</s1><s2>Brisbane, Queensland 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ></fA14><fA20><s1>1259-1264</s1></fA20><fA21><s1>2000</s1></fA21><fA23 i1="01"><s0>ENG</s0></fA23><fA43 i1="01"><s1>INIST</s1><s2>9775</s2><s5>354000087350870410</s5></fA43><fA44><s0>0000</s0><s1>© 2000 INIST-CNRS. All rights reserved.</s1></fA44><fA45><s0>25 ref.</s0></fA45><fA47 i1="01" i2="1"><s0>00-0488347</s0></fA47><fA60><s1>P</s1></fA60><fA61><s0>A</s0></fA61><fA64 i1="01" i2="1"><s0>International journal of systematic and evolutionary microbiology : (Print)</s0></fA64><fA66 i1="01"><s0>GBR</s0></fA66><fC01 i1="01" l="ENG"><s0>A new peptide-degrading, strictly anaerobic bacterium, designated strain TMC4<sup>T</sup>, was isolated from an olive mill wastewater treatment digester. Cells of strain TMC4T were motile, rod-shaped (5-10 x 0.6-1.2 μm), stained Gram-positive and formed terminal to subterminal spores that distended the cells. Optimal growth occurred at 37 °C and pH 7 in an anaerobic basal medium containing 0.5% Casamino acids. Arginine, lysine, cysteine, methionine, histidine, serine, isoleucine, yeast extract, peptone, Biotrypcase, gelatin and crotonate also supported growth, but not carbohydrates, organic acids or alcohols. The end-products of degradation were: acetate and butyrate from lysine and crotonate; acetate, butyrate, H<sub>2</sub> and CO<sub>2</sub> from Biotrypcase, gelatin and peptone; acetate, alanine, H<sub>2</sub> and CO<sub>2</sub> from cysteine; acetate, H<sub>2</sub> and CO<sub>2</sub> from serine, cysteine and yeast extract; acetate and formate from histidine; propionate from methionine; methyl 2-butyrate, H<sub>2</sub> and CO<sub>2</sub> from isoleucine; acetate and ethanol from arginine; and acetate, propionate, butyrate, methyl 2-butyrate, H<sub>2</sub> and CO<sub>2</sub> from Casamino acids. The DNA G+C content of strain TMC4<sup>T</sup> was 31 mol%. Phylogeny based on 16S rRNA sequence analysis showed that strain TMC4T was a member of the low-G+C-content Gram-positive genus Clostridium, with the closest relative being Clostridium pascui (sequence similarity of 96 %). Due to considerable differences in genomic and phenotypic properties between strain TMC4T and those of its nearest relative, strain TMC4T is proposed as a new species of the genus Clostridium, Clostridium peptidivorans sp. nov. Strain TMC4<sup>T</sup> has been deposited in the DSMZ as strain DSM 12505T.</s0></fC01><fC02 i1="01" i2="X"><s0>002A05B02</s0></fC02><fC02 i1="02" i2="X"><s0>002A31B01A</s0></fC02><fC02 i1="03" i2="X"><s0>215</s0></fC02><fC03 i1="01" i2="X" l="FRE"><s0>Clostridium</s0><s2>NS</s2><s5>01</s5></fC03><fC03 i1="01" i2="X" l="ENG"><s0>Clostridium</s0><s2>NS</s2><s5>01</s5></fC03><fC03 i1="01" i2="X" l="SPA"><s0>Clostridium</s0><s2>NS</s2><s5>01</s5></fC03><fC03 i1="02" i2="X" l="FRE"><s0>Espèce nouvelle</s0><s5>03</s5></fC03><fC03 i1="02" i2="X" l="ENG"><s0>New species</s0><s5>03</s5></fC03><fC03 i1="02" i2="X" l="SPA"><s0>Especie nueva</s0><s5>03</s5></fC03><fC03 i1="03" i2="X" l="FRE"><s0>Olive</s0><s5>04</s5></fC03><fC03 i1="03" i2="X" l="ENG"><s0>Olive</s0><s5>04</s5></fC03><fC03 i1="03" i2="X" l="SPA"><s0>Oliva</s0><s5>04</s5></fC03><fC03 i1="04" i2="X" l="FRE"><s0>Epuration eau usée</s0><s5>05</s5></fC03><fC03 i1="04" i2="X" l="ENG"><s0>Waste water purification</s0><s5>05</s5></fC03><fC03 i1="04" i2="X" l="SPA"><s0>Depuración aguas servidas</s0><s5>05</s5></fC03><fC03 i1="05" i2="X" l="FRE"><s0>Fermenteur</s0><s5>06</s5></fC03><fC03 i1="05" i2="X" l="ENG"><s0>Fermenter</s0><s5>06</s5></fC03><fC03 i1="05" i2="X" l="SPA"><s0>Fermentador</s0><s5>06</s5></fC03><fC03 i1="06" i2="X" l="FRE"><s0>Caractérisation</s0><s5>07</s5></fC03><fC03 i1="06" i2="X" l="ENG"><s0>Characterization</s0><s5>07</s5></fC03><fC03 i1="06" i2="X" l="SPA"><s0>Caracterización</s0><s5>07</s5></fC03><fC03 i1="07" i2="X" l="FRE"><s0>Fermentation</s0><s5>08</s5></fC03><fC03 i1="07" i2="X" l="ENG"><s0>Fermentation</s0><s5>08</s5></fC03><fC03 i1="07" i2="X" l="SPA"><s0>Fermentación</s0><s5>08</s5></fC03><fC03 i1="08" i2="X" l="FRE"><s0>Peptide</s0><s5>09</s5></fC03><fC03 i1="08" i2="X" l="ENG"><s0>Peptides</s0><s5>09</s5></fC03><fC03 i1="08" i2="X" l="SPA"><s0>Péptido</s0><s5>09</s5></fC03><fC03 i1="09" i2="X" l="FRE"><s0>Phénotype</s0><s5>10</s5></fC03><fC03 i1="09" i2="X" l="ENG"><s0>Phenotype</s0><s5>10</s5></fC03><fC03 i1="09" i2="X" l="SPA"><s0>Fenotipo</s0><s5>10</s5></fC03><fC03 i1="10" i2="X" l="FRE"><s0>Génotype</s0><s5>11</s5></fC03><fC03 i1="10" i2="X" l="ENG"><s0>Genotype</s0><s5>11</s5></fC03><fC03 i1="10" i2="X" l="SPA"><s0>Genotipo</s0><s5>11</s5></fC03><fC03 i1="11" i2="X" l="FRE"><s0>Phylogenèse</s0><s5>12</s5></fC03><fC03 i1="11" i2="X" l="ENG"><s0>Phylogeny</s0><s5>12</s5></fC03><fC03 i1="11" i2="X" l="SPA"><s0>Filogénesis</s0><s5>12</s5></fC03><fC03 i1="12" i2="X" l="FRE"><s0>Description</s0><s5>14</s5></fC03><fC03 i1="12" i2="X" l="ENG"><s0>Description</s0><s5>14</s5></fC03><fC03 i1="12" i2="X" l="SPA"><s0>Descripción</s0><s5>14</s5></fC03><fC03 i1="13" i2="X" l="FRE"><s0>Clostridium peptidivorans</s0><s2>NS</s2><s4>INC</s4><s5>91</s5></fC03><fC07 i1="01" i2="X" l="FRE"><s0>Clostridiaceae</s0><s2>NS</s2></fC07><fC07 i1="01" i2="X" l="ENG"><s0>Clostridiaceae</s0><s2>NS</s2></fC07><fC07 i1="01" i2="X" l="SPA"><s0>Clostridiaceae</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="FRE"><s0>Clostridiales</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="ENG"><s0>Clostridiales</s0><s2>NS</s2></fC07><fC07 i1="02" i2="X" l="SPA"><s0>Clostridiales</s0><s2>NS</s2></fC07><fC07 i1="03" i2="X" l="FRE"><s0>Bactérie</s0></fC07><fC07 i1="03" i2="X" l="ENG"><s0>Bacteria</s0></fC07><fC07 i1="03" i2="X" l="SPA"><s0>Bacteria</s0></fC07><fC07 i1="04" i2="X" l="FRE"><s0>Bioréacteur</s0><s5>22</s5></fC07><fC07 i1="04" i2="X" l="ENG"><s0>Bioreactor</s0><s5>22</s5></fC07><fC07 i1="04" i2="X" l="SPA"><s0>Biorreactor</s0><s5>22</s5></fC07><fC07 i1="05" i2="X" l="FRE"><s0>Systématique</s0><s5>43</s5></fC07><fC07 i1="05" i2="X" l="ENG"><s0>Taxonomy</s0><s5>43</s5></fC07><fC07 i1="05" i2="X" l="SPA"><s0>Sistemática</s0><s5>43</s5></fC07><fN21><s1>325</s1></fN21></pA></standard></inist></record>Pour manipuler ce document sous Unix (Dilib)
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