Common variants in CACNA1C and MDD susceptibility: A comprehensive meta-analysis.
Identifieur interne : 003641 ( Ncbi/Merge ); précédent : 003640; suivant : 003642Common variants in CACNA1C and MDD susceptibility: A comprehensive meta-analysis.
Auteurs : Shuquan Rao [République populaire de Chine] ; Yao Yao [République populaire de Chine] ; Chuan Zheng [République populaire de Chine] ; Joanne Ryan [Australie] ; Canquan Mao [République populaire de Chine] ; Fuquan Zhang [République populaire de Chine] ; David Meyre [Canada] ; Qi Xu [République populaire de Chine]Source :
- American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics [ 1552-485X ] ; 2016.
Descripteurs français
- KwdFr :
- Canaux calciques de type L (génétique), Canaux calciques de type L (métabolisme), Canaux calciques de type L (physiologie), Facteurs de risque, Femelle, Génotype, Humains, Mâle, Polymorphisme de nucléotide simple (génétique), Population d'origine européenne, Prédisposition génétique à une maladie (génétique), Trouble dépressif majeur (génétique), Trouble dépressif majeur (physiopathologie), Trouble dépressif majeur (psychologie), Variation génétique (génétique), Étude d'association pangénomique.
- MESH :
- génétique : Canaux calciques de type L, Polymorphisme de nucléotide simple, Prédisposition génétique à une maladie, Trouble dépressif majeur, Variation génétique.
- métabolisme : Canaux calciques de type L.
- physiologie : Canaux calciques de type L.
- physiopathologie : Trouble dépressif majeur.
- psychologie : Trouble dépressif majeur.
- Facteurs de risque, Femelle, Génotype, Humains, Mâle, Population d'origine européenne, Étude d'association pangénomique.
English descriptors
- KwdEn :
- Calcium Channels, L-Type (genetics), Calcium Channels, L-Type (metabolism), Calcium Channels, L-Type (physiology), Depressive Disorder, Major (genetics), Depressive Disorder, Major (physiopathology), Depressive Disorder, Major (psychology), European Continental Ancestry Group, Female, Genetic Predisposition to Disease (genetics), Genetic Variation (genetics), Genome-Wide Association Study, Genotype, Humans, Male, Polymorphism, Single Nucleotide (genetics), Risk Factors.
- MESH :
- chemical , genetics : Calcium Channels, L-Type.
- chemical , metabolism : Calcium Channels, L-Type.
- chemical , physiology : Calcium Channels, L-Type.
- genetics : Depressive Disorder, Major, Genetic Predisposition to Disease, Genetic Variation, Polymorphism, Single Nucleotide.
- physiopathology : Depressive Disorder, Major.
- psychology : Depressive Disorder, Major.
- European Continental Ancestry Group, Female, Genome-Wide Association Study, Genotype, Humans, Male, Risk Factors.
Abstract
Major depressive disorder (MDD) is one of the most common psychiatric disorders with a relatively high heritability (35-40%). Though rs1006737 in the CACNA1C gene showed significant association with MDD in a British large-scale candidate association study, most of the replication analyses with relatively small sample size reported negative association. Moreover, this locus has never been identified in previous genome-wide association studies (GWAS) for MDD. Here, we conducted a comprehensive meta-analysis of the association between CACNA1C variants and MDD risk by combining all published data. Genetic data from one European GWAS and five individual follow-up studies, which include up to 12,629 patients of MDD and 28,653 controls, that is, the largest sample size on CACNA1C to date, were collected. Rs1006737 showed significant association with MDD in the fixed-effect model (Z = 2.56, P = 0.011, OR = 1.08, 95%CI = 1.04-1.12) and the association remained after reanalyzing the data according to ethnicity. We additionally analyzed other 25 SNPs, genotyped in only one replication study, across the CACNA1C locus, and found that two SNPs, rs4765905 (P = 0.041, OR = 1.05, 95%CI 1.00-1.09) and rs4765937 (P = 0.025, OR = 1.05, 95%CI 1.01-1.09) showed nominal association with MDD, while rs2239073 (P = 0.002, OR = 1.07, 95%CI 1.02-1.11) exhibited significant association with MDD, which survived from multiple corrections. Our study provides support for positive association between CACNA1C and MDD; however, the current data suggest the necessity of replication analyses in a larger-scale sample. © 2016 Wiley Periodicals, Inc.
DOI: 10.1002/ajmg.b.32466
PubMed: 27260792
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<front><div type="abstract" xml:lang="en">Major depressive disorder (MDD) is one of the most common psychiatric disorders with a relatively high heritability (35-40%). Though rs1006737 in the CACNA1C gene showed significant association with MDD in a British large-scale candidate association study, most of the replication analyses with relatively small sample size reported negative association. Moreover, this locus has never been identified in previous genome-wide association studies (GWAS) for MDD. Here, we conducted a comprehensive meta-analysis of the association between CACNA1C variants and MDD risk by combining all published data. Genetic data from one European GWAS and five individual follow-up studies, which include up to 12,629 patients of MDD and 28,653 controls, that is, the largest sample size on CACNA1C to date, were collected. Rs1006737 showed significant association with MDD in the fixed-effect model (Z = 2.56, P = 0.011, OR = 1.08, 95%CI = 1.04-1.12) and the association remained after reanalyzing the data according to ethnicity. We additionally analyzed other 25 SNPs, genotyped in only one replication study, across the CACNA1C locus, and found that two SNPs, rs4765905 (P = 0.041, OR = 1.05, 95%CI 1.00-1.09) and rs4765937 (P = 0.025, OR = 1.05, 95%CI 1.01-1.09) showed nominal association with MDD, while rs2239073 (P = 0.002, OR = 1.07, 95%CI 1.02-1.11) exhibited significant association with MDD, which survived from multiple corrections. Our study provides support for positive association between CACNA1C and MDD; however, the current data suggest the necessity of replication analyses in a larger-scale sample. © 2016 Wiley Periodicals, Inc.</div>
</front>
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<Abstract><AbstractText>Major depressive disorder (MDD) is one of the most common psychiatric disorders with a relatively high heritability (35-40%). Though rs1006737 in the CACNA1C gene showed significant association with MDD in a British large-scale candidate association study, most of the replication analyses with relatively small sample size reported negative association. Moreover, this locus has never been identified in previous genome-wide association studies (GWAS) for MDD. Here, we conducted a comprehensive meta-analysis of the association between CACNA1C variants and MDD risk by combining all published data. Genetic data from one European GWAS and five individual follow-up studies, which include up to 12,629 patients of MDD and 28,653 controls, that is, the largest sample size on CACNA1C to date, were collected. Rs1006737 showed significant association with MDD in the fixed-effect model (Z = 2.56, P = 0.011, OR = 1.08, 95%CI = 1.04-1.12) and the association remained after reanalyzing the data according to ethnicity. We additionally analyzed other 25 SNPs, genotyped in only one replication study, across the CACNA1C locus, and found that two SNPs, rs4765905 (P = 0.041, OR = 1.05, 95%CI 1.00-1.09) and rs4765937 (P = 0.025, OR = 1.05, 95%CI 1.01-1.09) showed nominal association with MDD, while rs2239073 (P = 0.002, OR = 1.07, 95%CI 1.02-1.11) exhibited significant association with MDD, which survived from multiple corrections. Our study provides support for positive association between CACNA1C and MDD; however, the current data suggest the necessity of replication analyses in a larger-scale sample. © 2016 Wiley Periodicals, Inc.</AbstractText>
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<Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Qi</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D017418">Meta-Analysis</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2016</Year>
<Month>06</Month>
<Day>03</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Am J Med Genet B Neuropsychiatr Genet</MedlineTA>
<NlmUniqueID>101235742</NlmUniqueID>
<ISSNLinking>1552-4841</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="C079146">CACNA1C protein, human</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D020746">Calcium Channels, L-Type</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D020746" MajorTopicYN="N">Calcium Channels, L-Type</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003865" MajorTopicYN="N">Depressive Disorder, Major</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000503" MajorTopicYN="N">physiopathology</QualifierName>
<QualifierName UI="Q000523" MajorTopicYN="N">psychology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D044465" MajorTopicYN="N">European Continental Ancestry Group</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020022" MajorTopicYN="N">Genetic Predisposition to Disease</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055106" MajorTopicYN="N">Genome-Wide Association Study</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012307" MajorTopicYN="N">Risk Factors</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">CACNA1C</Keyword>
<Keyword MajorTopicYN="N">common variants</Keyword>
<Keyword MajorTopicYN="N">major depressive disorder</Keyword>
<Keyword MajorTopicYN="N">meta-analysis</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year>
<Month>04</Month>
<Day>13</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2016</Year>
<Month>05</Month>
<Day>20</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2016</Year>
<Month>6</Month>
<Day>5</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2016</Year>
<Month>6</Month>
<Day>5</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>9</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">27260792</ArticleId>
<ArticleId IdType="doi">10.1002/ajmg.b.32466</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Australie</li>
<li>Canada</li>
<li>République populaire de Chine</li>
</country>
<region><li>Ontario</li>
<li>Victoria (État)</li>
</region>
<settlement><li>Hamilton (Ontario)</li>
<li>Melbourne</li>
<li>Pékin</li>
</settlement>
<orgName><li>Université McMaster</li>
<li>Université de Melbourne</li>
</orgName>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Rao, Shuquan" sort="Rao, Shuquan" uniqKey="Rao S" first="Shuquan" last="Rao">Shuquan Rao</name>
</noRegion>
<name sortKey="Mao, Canquan" sort="Mao, Canquan" uniqKey="Mao C" first="Canquan" last="Mao">Canquan Mao</name>
<name sortKey="Xu, Qi" sort="Xu, Qi" uniqKey="Xu Q" first="Qi" last="Xu">Qi Xu</name>
<name sortKey="Yao, Yao" sort="Yao, Yao" uniqKey="Yao Y" first="Yao" last="Yao">Yao Yao</name>
<name sortKey="Zhang, Fuquan" sort="Zhang, Fuquan" uniqKey="Zhang F" first="Fuquan" last="Zhang">Fuquan Zhang</name>
<name sortKey="Zheng, Chuan" sort="Zheng, Chuan" uniqKey="Zheng C" first="Chuan" last="Zheng">Chuan Zheng</name>
</country>
<country name="Australie"><region name="Victoria (État)"><name sortKey="Ryan, Joanne" sort="Ryan, Joanne" uniqKey="Ryan J" first="Joanne" last="Ryan">Joanne Ryan</name>
</region>
</country>
<country name="Canada"><region name="Ontario"><name sortKey="Meyre, David" sort="Meyre, David" uniqKey="Meyre D" first="David" last="Meyre">David Meyre</name>
</region>
</country>
</tree>
</affiliations>
</record>
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