Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).
Identifieur interne : 001B10 ( Ncbi/Merge ); précédent : 001B09; suivant : 001B11Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).
Auteurs : Pilar Catalan [Russie] ; Boulos Chalhoub [France] ; Vincent Chochois [Australie] ; David F. Garvin [États-Unis] ; Robert Hasterok [Pologne] ; Antonio J. Manzaneda [Espagne] ; Luis A J. Mur [Royaume-Uni] ; Nicola Pecchioni [Italie] ; S Ren K. Rasmussen [Danemark] ; John P. Vogel [États-Unis] ; Aline Voxeur [France]Source :
- Trends in plant science [ 1878-4372 ] ; 2014.
Descripteurs français
- KwdFr :
- Biomasse, Brachypodium (croissance et développement), Brachypodium (génétique), Brachypodium (physiologie), Génome végétal (génétique), Génomique, Maladies des plantes, Modèles biologiques, Paroi cellulaire (métabolisme), Poaceae (croissance et développement), Poaceae (génétique), Poaceae (physiologie), Stress physiologique, Évolution moléculaire.
- MESH :
- croissance et développement : Brachypodium, Poaceae.
- génétique : Brachypodium, Génome végétal, Poaceae.
- métabolisme : Paroi cellulaire.
- physiologie : Brachypodium, Poaceae.
- Biomasse, Génomique, Maladies des plantes, Modèles biologiques, Stress physiologique, Évolution moléculaire.
English descriptors
- KwdEn :
- Biomass, Brachypodium (genetics), Brachypodium (growth & development), Brachypodium (physiology), Cell Wall (metabolism), Evolution, Molecular, Genome, Plant (genetics), Genomics, Models, Biological, Plant Diseases, Poaceae (genetics), Poaceae (growth & development), Poaceae (physiology), Stress, Physiological.
- MESH :
- genetics : Brachypodium, Genome, Plant, Poaceae.
- growth & development : Brachypodium, Poaceae.
- metabolism : Cell Wall.
- physiology : Brachypodium, Poaceae.
- Biomass, Evolution, Molecular, Genomics, Models, Biological, Plant Diseases, Stress, Physiological.
Abstract
The scientific presentations at the First International Brachypodium Conference (abstracts available at http://www.brachy2013.unimore.it) are evidence of the widespread adoption of Brachypodium distachyon as a model system. Furthermore, the wide range of topics presented (genome evolution, roots, abiotic and biotic stress, comparative genomics, natural diversity, and cell walls) demonstrates that the Brachypodium research community has achieved a critical mass of tools and has transitioned from resource development to addressing biological questions, particularly those unique to grasses.
DOI: 10.1016/j.tplants.2014.05.002
PubMed: 24917149
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Garvin</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) Plant Science Research Unit, 411 Borlaug Hall, University of Minnesota, 1991 Upper Buford Circle, St Paul, MN 55108, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) Plant Science Research Unit, 411 Borlaug Hall, University of Minnesota, 1991 Upper Buford Circle, St Paul, MN 55108</wicri:regionArea><placeName><region type="state">Minnesota</region></placeName></affiliation></author><author><name sortKey="Hasterok, Robert" sort="Hasterok, Robert" uniqKey="Hasterok R" first="Robert" last="Hasterok">Robert Hasterok</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Anatomy and Cytology, University of Silesia in Katowice, Jagiellonska 28, 40-032 Katowice, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Department of Plant Anatomy and Cytology, University of Silesia in Katowice, Jagiellonska 28, 40-032 Katowice</wicri:regionArea><wicri:noRegion>40-032 Katowice</wicri:noRegion></affiliation></author><author><name sortKey="Manzaneda, Antonio J" sort="Manzaneda, Antonio J" uniqKey="Manzaneda A" first="Antonio J" last="Manzaneda">Antonio J. Manzaneda</name><affiliation wicri:level="1"><nlm:affiliation>Departamento Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Paraje las Lagunillas s/n, 23071 Jaén, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Departamento Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Paraje las Lagunillas s/n, 23071 Jaén</wicri:regionArea><wicri:noRegion>23071 Jaén</wicri:noRegion></affiliation></author><author><name sortKey="Mur, Luis A J" sort="Mur, Luis A J" uniqKey="Mur L" first="Luis A J" last="Mur">Luis A J. Mur</name><affiliation wicri:level="1"><nlm:affiliation>Aberystwyth University, Institute of Biological, Environmental and Rural Science, Aberystwyth, SY23 3DA, Wales, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Aberystwyth University, Institute of Biological, Environmental and Rural Science, Aberystwyth, SY23 3DA, Wales</wicri:regionArea><wicri:noRegion>Wales</wicri:noRegion></affiliation></author><author><name sortKey="Pecchioni, Nicola" sort="Pecchioni, Nicola" uniqKey="Pecchioni N" first="Nicola" last="Pecchioni">Nicola Pecchioni</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, University of Modena and Reggio Emilia, Via Amendola 2, 42122 Reggio Emilia, Italy. Electronic address: nicola.pecchioni@unimore.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Life Sciences, University of Modena and Reggio Emilia, Via Amendola 2, 42122 Reggio Emilia</wicri:regionArea><wicri:noRegion>42122 Reggio Emilia</wicri:noRegion></affiliation></author><author><name sortKey="Rasmussen, S Ren K" sort="Rasmussen, S Ren K" uniqKey="Rasmussen S" first="S Ren K" last="Rasmussen">S Ren K. Rasmussen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark.</nlm:affiliation><country xml:lang="fr">Danemark</country><wicri:regionArea>Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg</wicri:regionArea><wicri:noRegion>1871 Frederiksberg</wicri:noRegion></affiliation></author><author><name sortKey="Vogel, John P" sort="Vogel, John P" uniqKey="Vogel J" first="John P" last="Vogel">John P. Vogel</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Voxeur, Aline" sort="Voxeur, Aline" uniqKey="Voxeur A" first="Aline" last="Voxeur">Aline Voxeur</name><affiliation wicri:level="3"><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Institut Jean-Pierre Bourgin (IJPB) Unité Mixte de Recherche (UMR) 1318, Saclay Plant Science, 78000 Versailles, France; AgroParisTech, Institut Jean-Pierre Bourgin (IJPB) UMR1318, Saclay Plant Science, 78000 Versailles, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), Institut Jean-Pierre Bourgin (IJPB) Unité Mixte de Recherche (UMR) 1318, Saclay Plant Science, 78000 Versailles, France; AgroParisTech, Institut Jean-Pierre Bourgin (IJPB) UMR1318, Saclay Plant Science, 78000 Versailles</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Versailles</settlement></placeName></affiliation></author></analytic><series><title level="j">Trends in plant science</title><idno type="eISSN">1878-4372</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biomass</term><term>Brachypodium (genetics)</term><term>Brachypodium (growth & development)</term><term>Brachypodium (physiology)</term><term>Cell Wall (metabolism)</term><term>Evolution, Molecular</term><term>Genome, Plant (genetics)</term><term>Genomics</term><term>Models, Biological</term><term>Plant Diseases</term><term>Poaceae (genetics)</term><term>Poaceae (growth & development)</term><term>Poaceae (physiology)</term><term>Stress, Physiological</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Biomasse</term><term>Brachypodium (croissance et développement)</term><term>Brachypodium (génétique)</term><term>Brachypodium (physiologie)</term><term>Génome végétal (génétique)</term><term>Génomique</term><term>Maladies des plantes</term><term>Modèles biologiques</term><term>Paroi cellulaire (métabolisme)</term><term>Poaceae (croissance et développement)</term><term>Poaceae (génétique)</term><term>Poaceae (physiologie)</term><term>Stress physiologique</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Brachypodium</term><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Brachypodium</term><term>Genome, Plant</term><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Brachypodium</term><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Brachypodium</term><term>Génome végétal</term><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Paroi cellulaire</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Brachypodium</term><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Brachypodium</term><term>Poaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biomass</term><term>Evolution, Molecular</term><term>Genomics</term><term>Models, Biological</term><term>Plant Diseases</term><term>Stress, Physiological</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Biomasse</term><term>Génomique</term><term>Maladies des plantes</term><term>Modèles biologiques</term><term>Stress physiologique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The scientific presentations at the First International Brachypodium Conference (abstracts available at http://www.brachy2013.unimore.it) are evidence of the widespread adoption of Brachypodium distachyon as a model system. Furthermore, the wide range of topics presented (genome evolution, roots, abiotic and biotic stress, comparative genomics, natural diversity, and cell walls) demonstrates that the Brachypodium research community has achieved a critical mass of tools and has transitioned from resource development to addressing biological questions, particularly those unique to grasses.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24917149</PMID><DateCreated><Year>2014</Year><Month>07</Month><Day>04</Day></DateCreated><DateCompleted><Year>2015</Year><Month>02</Month><Day>19</Day></DateCompleted><DateRevised><Year>2014</Year><Month>07</Month><Day>04</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1878-4372</ISSN><JournalIssue CitedMedium="Internet"><Volume>19</Volume><Issue>7</Issue><PubDate><Year>2014</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Trends in plant science</Title><ISOAbbreviation>Trends Plant Sci.</ISOAbbreviation></Journal><ArticleTitle>Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).</ArticleTitle><Pagination><MedlinePgn>414-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.tplants.2014.05.002</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S1360-1385(14)00119-8</ELocationID><Abstract><AbstractText>The scientific presentations at the First International Brachypodium Conference (abstracts available at http://www.brachy2013.unimore.it) are evidence of the widespread adoption of Brachypodium distachyon as a model system. Furthermore, the wide range of topics presented (genome evolution, roots, abiotic and biotic stress, comparative genomics, natural diversity, and cell walls) demonstrates that the Brachypodium research community has achieved a critical mass of tools and has transitioned from resource development to addressing biological questions, particularly those unique to grasses.</AbstractText><CopyrightInformation>Copyright © 2014 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Catalan</LastName><ForeName>Pilar</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Agricultural and Environmental Sciences, High Polytechnic School of Huesca, University of Zaragoza, Carretera Cuarte km 1, 22071 Huesca, Spain; Department of Botany, Institute of Biology, Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chalhoub</LastName><ForeName>Boulos</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Unité de Recherche en Génomique Végétale (URGV), Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS)-Université Evry-Val d'Essonne (UEVE), Organization and Evolution of Plant Genomes (OEPG), 91057 Evry CEDEX, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chochois</LastName><ForeName>Vincent</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Commonwealth Scientific and Industrial Research Organisation (CSIRO) Plant Industry, Black mountain laboratories, Clunies Ross Street, 2601 Acton, Canberra, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Garvin</LastName><ForeName>David F</ForeName><Initials>DF</Initials><AffiliationInfo><Affiliation>United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) Plant Science Research Unit, 411 Borlaug Hall, University of Minnesota, 1991 Upper Buford Circle, St Paul, MN 55108, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hasterok</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Plant Anatomy and Cytology, University of Silesia in Katowice, Jagiellonska 28, 40-032 Katowice, Poland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Manzaneda</LastName><ForeName>Antonio J</ForeName><Initials>AJ</Initials><AffiliationInfo><Affiliation>Departamento Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Paraje las Lagunillas s/n, 23071 Jaén, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mur</LastName><ForeName>Luis A J</ForeName><Initials>LA</Initials><AffiliationInfo><Affiliation>Aberystwyth University, Institute of Biological, Environmental and Rural Science, Aberystwyth, SY23 3DA, Wales, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pecchioni</LastName><ForeName>Nicola</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, University of Modena and Reggio Emilia, Via Amendola 2, 42122 Reggio Emilia, Italy. Electronic address: nicola.pecchioni@unimore.it.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rasmussen</LastName><ForeName>Søren K</ForeName><Initials>SK</Initials><AffiliationInfo><Affiliation>Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vogel</LastName><ForeName>John P</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Voxeur</LastName><ForeName>Aline</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique (INRA), Institut Jean-Pierre Bourgin (IJPB) Unité Mixte de Recherche (UMR) 1318, Saclay Plant Science, 78000 Versailles, France; AgroParisTech, Institut Jean-Pierre Bourgin (IJPB) UMR1318, Saclay Plant Science, 78000 Versailles, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>06</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Trends Plant Sci</MedlineTA><NlmUniqueID>9890299</NlmUniqueID><ISSNLinking>1360-1385</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018533" MajorTopicYN="N">Biomass</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058431" MajorTopicYN="N">Brachypodium</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="Y">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008954" MajorTopicYN="N">Models, Biological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="Y">Plant Diseases</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006109" MajorTopicYN="N">Poaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Brachypodium</Keyword><Keyword MajorTopicYN="N">crop improvement</Keyword><Keyword MajorTopicYN="N">genomics</Keyword><Keyword MajorTopicYN="N">model plant</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>01</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2014</Year><Month>05</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>05</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>6</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>6</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>2</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24917149</ArticleId><ArticleId IdType="pii">S1360-1385(14)00119-8</ArticleId><ArticleId IdType="doi">10.1016/j.tplants.2014.05.002</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Australie</li><li>Danemark</li><li>Espagne</li><li>France</li><li>Italie</li><li>Pologne</li><li>Royaume-Uni</li><li>Russie</li><li>États-Unis</li></country><region><li>Californie</li><li>Minnesota</li><li>Île-de-France</li></region><settlement><li>Versailles</li></settlement></list><tree><country name="Russie"><noRegion><name sortKey="Catalan, Pilar" sort="Catalan, Pilar" uniqKey="Catalan P" first="Pilar" last="Catalan">Pilar Catalan</name></noRegion></country><country name="France"><noRegion><name sortKey="Chalhoub, Boulos" sort="Chalhoub, Boulos" uniqKey="Chalhoub B" first="Boulos" last="Chalhoub">Boulos Chalhoub</name></noRegion><name sortKey="Voxeur, Aline" sort="Voxeur, Aline" uniqKey="Voxeur A" first="Aline" last="Voxeur">Aline Voxeur</name></country><country name="Australie"><noRegion><name sortKey="Chochois, Vincent" sort="Chochois, Vincent" uniqKey="Chochois V" first="Vincent" last="Chochois">Vincent Chochois</name></noRegion></country><country name="États-Unis"><region name="Minnesota"><name sortKey="Garvin, David F" sort="Garvin, David F" uniqKey="Garvin D" first="David F" last="Garvin">David F. 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