Structure, localization and histone binding properties of nuclear-associated nucleosome assembly protein from Plasmodium falciparum
Identifieur interne : 000761 ( Ncbi/Curation ); précédent : 000760; suivant : 000762Structure, localization and histone binding properties of nuclear-associated nucleosome assembly protein from Plasmodium falciparum
Auteurs : Jasmita Gill [Inde] ; Anuj Kumar [Inde] ; Manickam Yogavel [Inde] ; Hassan Belrhali [France] ; Sk Jain [Inde] ; Melanie Rug [Australie] ; Monica Brown [Australie] ; Alexander G. Maier [Australie] ; Amit Sharma [Inde]Source :
- Malaria Journal [ 1475-2875 ] ; 2010.
Abstract
Nucleosome assembly proteins (NAPs) are histone chaperones that are crucial for the shuttling and incorporation of histones into nucleosomes. NAPs participate in the assembly and disassembly of nucleosomes thus contributing to chromatin structure organization. The human malaria parasite
Three-dimensional crystal structure of PfNapS has been determined and analysed. Gene knockout and localization studies were also performed on PfNapS using transfection studies. Fluorescence spectroscopy was performed to identify histone-binding sites on PfNapS. Extensive sequence and structural comparisons were done with the crystal structures available for NAP/SET family of proteins.
Crystal structure of PfNapS shares structural similarity with previous structures from NAP/SET family. Failed attempts to knock-out the gene for PfNapS from malaria parasite suggest essentiality in the parasite. GFP-fused PfNapS fusion protein targeting indicates cellular localization of PfNapS in the parasite nucleus. Fluorescence spectroscopy data suggest that PfNapS interacts with core histones (tetramer, octamer, H3, H4, H2A and H2B) at a different site from its interaction with linker histone H1. This analysis illustrates two regions on the PfNapS dimer as the possible sites for histone recognition.
This work presents a thorough analysis of the structural, functional and regulatory attributes of PfNapS from
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DOI: 10.1186/1475-2875-9-90
PubMed: 20377878
PubMed Central: 2873526
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Maier</name><affiliation wicri:level="1"><nlm:aff id="I4">Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050</wicri:regionArea><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I5">Biochemistry Department, La Trobe University, Melbourne 3086, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Biochemistry Department, La Trobe University, Melbourne 3086</wicri:regionArea><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Sharma, Amit" sort="Sharma, Amit" uniqKey="Sharma A" first="Amit" last="Sharma">Amit Sharma</name><affiliation wicri:level="1"><nlm:aff id="I1">Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067, India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067</wicri:regionArea><wicri:noRegion>110067</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">20377878</idno><idno type="pmc">2873526</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873526</idno><idno type="RBID">PMC:2873526</idno><idno type="doi">10.1186/1475-2875-9-90</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">002741</idno><idno type="wicri:explorRef" wicri:stream="Pmc" 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India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067</wicri:regionArea><wicri:noRegion>110067</wicri:noRegion></affiliation></author><author><name sortKey="Kumar, Anuj" sort="Kumar, Anuj" uniqKey="Kumar A" first="Anuj" last="Kumar">Anuj Kumar</name><affiliation wicri:level="1"><nlm:aff id="I1">Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067, India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067</wicri:regionArea><wicri:noRegion>110067</wicri:noRegion></affiliation></author><author><name sortKey="Yogavel, Manickam" sort="Yogavel, Manickam" uniqKey="Yogavel M" first="Manickam" last="Yogavel">Manickam Yogavel</name><affiliation wicri:level="1"><nlm:aff id="I1">Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067, India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067</wicri:regionArea><wicri:noRegion>110067</wicri:noRegion></affiliation></author><author><name sortKey="Belrhali, Hassan" sort="Belrhali, Hassan" uniqKey="Belrhali H" first="Hassan" last="Belrhali">Hassan Belrhali</name><affiliation wicri:level="1"><nlm:aff id="I2">European Molecular Biology Laboratory (EMBL), 6 rue Jules Horowitz, BP 181, F-38042 Grenoble Cedex 9, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>European Molecular Biology Laboratory (EMBL), 6 rue Jules Horowitz, BP 181, F-38042 Grenoble Cedex 9</wicri:regionArea><wicri:noRegion>38042 Grenoble Cedex 9</wicri:noRegion><wicri:noRegion>38042 Grenoble Cedex 9</wicri:noRegion></affiliation></author><author><name sortKey="Jain, Sk" sort="Jain, Sk" uniqKey="Jain S" first="Sk" last="Jain">Sk Jain</name><affiliation wicri:level="1"><nlm:aff id="I3">Department of Biotechnology, Jamia Hamdard, New Delhi 110062, India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Biotechnology, Jamia Hamdard, New Delhi 110062</wicri:regionArea><wicri:noRegion>New Delhi 110062</wicri:noRegion></affiliation></author><author><name sortKey="Rug, Melanie" sort="Rug, Melanie" uniqKey="Rug M" first="Melanie" last="Rug">Melanie Rug</name><affiliation wicri:level="1"><nlm:aff id="I4">Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050</wicri:regionArea><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Brown, Monica" sort="Brown, Monica" uniqKey="Brown M" first="Monica" last="Brown">Monica Brown</name><affiliation wicri:level="1"><nlm:aff id="I4">Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050</wicri:regionArea><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Maier, Alexander G" sort="Maier, Alexander G" uniqKey="Maier A" first="Alexander G" last="Maier">Alexander G. Maier</name><affiliation wicri:level="1"><nlm:aff id="I4">Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Malaria Functional Genomics Facility, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050</wicri:regionArea><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I5">Biochemistry Department, La Trobe University, Melbourne 3086, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Biochemistry Department, La Trobe University, Melbourne 3086</wicri:regionArea><placeName><settlement type="city">Melbourne</settlement><region type="état">Victoria (État)</region></placeName></affiliation></author><author><name sortKey="Sharma, Amit" sort="Sharma, Amit" uniqKey="Sharma A" first="Amit" last="Sharma">Amit Sharma</name><affiliation wicri:level="1"><nlm:aff id="I1">Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067, India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Road, New Delhi, 110067</wicri:regionArea><wicri:noRegion>110067</wicri:noRegion></affiliation></author></analytic><series><title level="j">Malaria Journal</title><idno type="eISSN">1475-2875</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Nucleosome assembly proteins (NAPs) are histone chaperones that are crucial for the shuttling and incorporation of histones into nucleosomes. NAPs participate in the assembly and disassembly of nucleosomes thus contributing to chromatin structure organization. The human malaria parasite <italic>Plasmodium falciparum </italic>contains two nucleosome assembly proteins termed PfNapL and PfNapS.</p></sec><sec><title>Methods</title><p>Three-dimensional crystal structure of PfNapS has been determined and analysed. Gene knockout and localization studies were also performed on PfNapS using transfection studies. Fluorescence spectroscopy was performed to identify histone-binding sites on PfNapS. Extensive sequence and structural comparisons were done with the crystal structures available for NAP/SET family of proteins.</p></sec><sec><title>Results</title><p>Crystal structure of PfNapS shares structural similarity with previous structures from NAP/SET family. Failed attempts to knock-out the gene for PfNapS from malaria parasite suggest essentiality in the parasite. GFP-fused PfNapS fusion protein targeting indicates cellular localization of PfNapS in the parasite nucleus. Fluorescence spectroscopy data suggest that PfNapS interacts with core histones (tetramer, octamer, H3, H4, H2A and H2B) at a different site from its interaction with linker histone H1. This analysis illustrates two regions on the PfNapS dimer as the possible sites for histone recognition.</p></sec><sec><title>Conclusions</title><p>This work presents a thorough analysis of the structural, functional and regulatory attributes of PfNapS from <italic>P. falciparum </italic>with respect to previously studied histone chaperones.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Luger, K" uniqKey="Luger K">K Luger</name></author><author><name sortKey="Maeder, Aw" uniqKey="Maeder A">AW Maeder</name></author><author><name sortKey="Richmond, Rk" uniqKey="Richmond R">RK Richmond</name></author><author><name sortKey="Sargent, Df" uniqKey="Sargent D">DF Sargent</name></author><author><name sortKey="Richmond, Tj" uniqKey="Richmond T">TJ Richmond</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krude, T" uniqKey="Krude T">T 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