Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean1[W][OA]
Identifieur interne : 000456 ( Ncbi/Curation ); précédent : 000455; suivant : 000457Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean1[W][OA]
Auteurs : Roger W. Innes ; Carine Ameline-Torregrosa ; Tom Ashfield ; Ethalinda Cannon ; Steven B. Cannon ; Ben Chacko ; Nicolas W. G. Chen ; Arnaud Couloux ; Anita Dalwani ; Roxanne Denny ; Shweta Deshpande ; Ashley N. Egan ; Natasha Glover ; Christian S. Hans ; Stacy Howell ; Dan Ilut ; Scott Jackson ; Hongshing Lai ; Jafar Mammadov ; Sara Martin Del Campo ; Michelle Metcalf ; Ashley Nguyen ; Majesta O'Bleness ; Bernard E. Pfeil ; Ram Podicheti ; Milind B. Ratnaparkhe ; Sylvie Samain ; Iryna Sanders ; Béatrice Ségurens ; Mireille Sévignac ; Sue Sherman-Broyles ; Vincent Thareau ; Dominic M. Tucker ; Jason Walling ; Adam Wawrzynski ; Jing Yi ; Jeff J. Doyle ; Valérie Geffroy ; Bruce A. Roe ; M. A. Saghai Maroof ; Nevin D. YoungSource :
- Plant Physiology [ 0032-0889 ] ; 2008.
Abstract
The genomes of most, if not all, flowering plants have undergone whole genome duplication events during their evolution. The impact of such polyploidy events is poorly understood, as is the fate of most duplicated genes. We sequenced an approximately 1 million-bp region in soybean (
Url:
DOI: 10.1104/pp.108.127902
PubMed: 18842825
PubMed Central: 2593655
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :001056
- to stream Pmc, to step Curation: Pour aller vers cette notice dans l'étape Curation :000F17
- to stream Pmc, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :002A21
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :000456
Links to Exploration step
PMC:2593655Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean<xref ref-type="fn" rid="fn1">1</xref><xref ref-type="fn" rid="fn3">[W]</xref><xref ref-type="fn" rid="fn4">[OA]</xref></title><author><name sortKey="Innes, Roger W" sort="Innes, Roger W" uniqKey="Innes R" first="Roger W." last="Innes">Roger W. Innes</name></author><author><name sortKey="Ameline Torregrosa, Carine" sort="Ameline Torregrosa, Carine" uniqKey="Ameline Torregrosa C" first="Carine" last="Ameline-Torregrosa">Carine Ameline-Torregrosa</name></author><author><name sortKey="Ashfield, Tom" sort="Ashfield, Tom" uniqKey="Ashfield T" first="Tom" last="Ashfield">Tom Ashfield</name></author><author><name sortKey="Cannon, Ethalinda" sort="Cannon, Ethalinda" uniqKey="Cannon E" first="Ethalinda" last="Cannon">Ethalinda Cannon</name></author><author><name sortKey="Cannon, Steven B" sort="Cannon, Steven B" uniqKey="Cannon S" first="Steven B." last="Cannon">Steven B. Cannon</name></author><author><name sortKey="Chacko, Ben" sort="Chacko, Ben" uniqKey="Chacko B" first="Ben" last="Chacko">Ben Chacko</name></author><author><name sortKey="Chen, Nicolas W G" sort="Chen, Nicolas W G" uniqKey="Chen N" first="Nicolas W. G." last="Chen">Nicolas W. G. Chen</name></author><author><name sortKey="Couloux, Arnaud" sort="Couloux, Arnaud" uniqKey="Couloux A" first="Arnaud" last="Couloux">Arnaud Couloux</name></author><author><name sortKey="Dalwani, Anita" sort="Dalwani, Anita" uniqKey="Dalwani A" first="Anita" last="Dalwani">Anita Dalwani</name></author><author><name sortKey="Denny, Roxanne" sort="Denny, Roxanne" uniqKey="Denny R" first="Roxanne" last="Denny">Roxanne Denny</name></author><author><name sortKey="Deshpande, Shweta" sort="Deshpande, Shweta" uniqKey="Deshpande S" first="Shweta" last="Deshpande">Shweta Deshpande</name></author><author><name sortKey="Egan, Ashley N" sort="Egan, Ashley N" uniqKey="Egan A" first="Ashley N." last="Egan">Ashley N. Egan</name></author><author><name sortKey="Glover, Natasha" sort="Glover, Natasha" uniqKey="Glover N" first="Natasha" last="Glover">Natasha Glover</name></author><author><name sortKey="Hans, Christian S" sort="Hans, Christian S" uniqKey="Hans C" first="Christian S." last="Hans">Christian S. Hans</name></author><author><name sortKey="Howell, Stacy" sort="Howell, Stacy" uniqKey="Howell S" first="Stacy" last="Howell">Stacy Howell</name></author><author><name sortKey="Ilut, Dan" sort="Ilut, Dan" uniqKey="Ilut D" first="Dan" last="Ilut">Dan Ilut</name></author><author><name sortKey="Jackson, Scott" sort="Jackson, Scott" uniqKey="Jackson S" first="Scott" last="Jackson">Scott Jackson</name></author><author><name sortKey="Lai, Hongshing" sort="Lai, Hongshing" uniqKey="Lai H" first="Hongshing" last="Lai">Hongshing Lai</name></author><author><name sortKey="Mammadov, Jafar" sort="Mammadov, Jafar" uniqKey="Mammadov J" first="Jafar" last="Mammadov">Jafar Mammadov</name></author><author><name sortKey="Del Campo, Sara Martin" sort="Del Campo, Sara Martin" uniqKey="Del Campo S" first="Sara Martin" last="Del Campo">Sara Martin Del Campo</name></author><author><name sortKey="Metcalf, Michelle" sort="Metcalf, Michelle" uniqKey="Metcalf M" first="Michelle" last="Metcalf">Michelle Metcalf</name></author><author><name sortKey="Nguyen, Ashley" sort="Nguyen, Ashley" uniqKey="Nguyen A" first="Ashley" last="Nguyen">Ashley Nguyen</name></author><author><name sortKey="O Bleness, Majesta" sort="O Bleness, Majesta" uniqKey="O Bleness M" first="Majesta" last="O'Bleness">Majesta O'Bleness</name></author><author><name sortKey="Pfeil, Bernard E" sort="Pfeil, Bernard E" uniqKey="Pfeil B" first="Bernard E." last="Pfeil">Bernard E. Pfeil</name></author><author><name sortKey="Podicheti, Ram" sort="Podicheti, Ram" uniqKey="Podicheti R" first="Ram" last="Podicheti">Ram Podicheti</name></author><author><name sortKey="Ratnaparkhe, Milind B" sort="Ratnaparkhe, Milind B" uniqKey="Ratnaparkhe M" first="Milind B." last="Ratnaparkhe">Milind B. Ratnaparkhe</name></author><author><name sortKey="Samain, Sylvie" sort="Samain, Sylvie" uniqKey="Samain S" first="Sylvie" last="Samain">Sylvie Samain</name></author><author><name sortKey="Sanders, Iryna" sort="Sanders, Iryna" uniqKey="Sanders I" first="Iryna" last="Sanders">Iryna Sanders</name></author><author><name sortKey="Segurens, Beatrice" sort="Segurens, Beatrice" uniqKey="Segurens B" first="Béatrice" last="Ségurens">Béatrice Ségurens</name></author><author><name sortKey="Sevignac, Mireille" sort="Sevignac, Mireille" uniqKey="Sevignac M" first="Mireille" last="Sévignac">Mireille Sévignac</name></author><author><name sortKey="Sherman Broyles, Sue" sort="Sherman Broyles, Sue" uniqKey="Sherman Broyles S" first="Sue" last="Sherman-Broyles">Sue Sherman-Broyles</name></author><author><name sortKey="Thareau, Vincent" sort="Thareau, Vincent" uniqKey="Thareau V" first="Vincent" last="Thareau">Vincent Thareau</name></author><author><name sortKey="Tucker, Dominic M" sort="Tucker, Dominic M" uniqKey="Tucker D" first="Dominic M." last="Tucker">Dominic M. Tucker</name></author><author><name sortKey="Walling, Jason" sort="Walling, Jason" uniqKey="Walling J" first="Jason" last="Walling">Jason Walling</name></author><author><name sortKey="Wawrzynski, Adam" sort="Wawrzynski, Adam" uniqKey="Wawrzynski A" first="Adam" last="Wawrzynski">Adam Wawrzynski</name></author><author><name sortKey="Yi, Jing" sort="Yi, Jing" uniqKey="Yi J" first="Jing" last="Yi">Jing Yi</name></author><author><name sortKey="Doyle, Jeff J" sort="Doyle, Jeff J" uniqKey="Doyle J" first="Jeff J." last="Doyle">Jeff J. Doyle</name></author><author><name sortKey="Geffroy, Valerie" sort="Geffroy, Valerie" uniqKey="Geffroy V" first="Valérie" last="Geffroy">Valérie Geffroy</name></author><author><name sortKey="Roe, Bruce A" sort="Roe, Bruce A" uniqKey="Roe B" first="Bruce A." last="Roe">Bruce A. Roe</name></author><author><name sortKey="Maroof, M A Saghai" sort="Maroof, M A Saghai" uniqKey="Maroof M" first="M. A. Saghai" last="Maroof">M. A. Saghai Maroof</name></author><author><name sortKey="Young, Nevin D" sort="Young, Nevin D" uniqKey="Young N" first="Nevin D." last="Young">Nevin D. Young</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">18842825</idno><idno type="pmc">2593655</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593655</idno><idno type="RBID">PMC:2593655</idno><idno type="doi">10.1104/pp.108.127902</idno><date when="2008">2008</date><idno type="wicri:Area/Pmc/Corpus">001056</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001056</idno><idno type="wicri:Area/Pmc/Curation">000F17</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000F17</idno><idno type="wicri:Area/Pmc/Checkpoint">002A21</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">002A21</idno><idno type="wicri:Area/Ncbi/Merge">000456</idno><idno type="wicri:Area/Ncbi/Curation">000456</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean<xref ref-type="fn" rid="fn1">1</xref><xref ref-type="fn" rid="fn3">[W]</xref><xref ref-type="fn" rid="fn4">[OA]</xref></title><author><name sortKey="Innes, Roger W" sort="Innes, Roger W" uniqKey="Innes R" first="Roger W." last="Innes">Roger W. Innes</name></author><author><name sortKey="Ameline Torregrosa, Carine" sort="Ameline Torregrosa, Carine" uniqKey="Ameline Torregrosa C" first="Carine" last="Ameline-Torregrosa">Carine Ameline-Torregrosa</name></author><author><name sortKey="Ashfield, Tom" sort="Ashfield, Tom" uniqKey="Ashfield T" first="Tom" last="Ashfield">Tom Ashfield</name></author><author><name sortKey="Cannon, Ethalinda" sort="Cannon, Ethalinda" uniqKey="Cannon E" first="Ethalinda" last="Cannon">Ethalinda Cannon</name></author><author><name sortKey="Cannon, Steven B" sort="Cannon, Steven B" uniqKey="Cannon S" first="Steven B." last="Cannon">Steven B. Cannon</name></author><author><name sortKey="Chacko, Ben" sort="Chacko, Ben" uniqKey="Chacko B" first="Ben" last="Chacko">Ben Chacko</name></author><author><name sortKey="Chen, Nicolas W G" sort="Chen, Nicolas W G" uniqKey="Chen N" first="Nicolas W. G." last="Chen">Nicolas W. G. Chen</name></author><author><name sortKey="Couloux, Arnaud" sort="Couloux, Arnaud" uniqKey="Couloux A" first="Arnaud" last="Couloux">Arnaud Couloux</name></author><author><name sortKey="Dalwani, Anita" sort="Dalwani, Anita" uniqKey="Dalwani A" first="Anita" last="Dalwani">Anita Dalwani</name></author><author><name sortKey="Denny, Roxanne" sort="Denny, Roxanne" uniqKey="Denny R" first="Roxanne" last="Denny">Roxanne Denny</name></author><author><name sortKey="Deshpande, Shweta" sort="Deshpande, Shweta" uniqKey="Deshpande S" first="Shweta" last="Deshpande">Shweta Deshpande</name></author><author><name sortKey="Egan, Ashley N" sort="Egan, Ashley N" uniqKey="Egan A" first="Ashley N." last="Egan">Ashley N. Egan</name></author><author><name sortKey="Glover, Natasha" sort="Glover, Natasha" uniqKey="Glover N" first="Natasha" last="Glover">Natasha Glover</name></author><author><name sortKey="Hans, Christian S" sort="Hans, Christian S" uniqKey="Hans C" first="Christian S." last="Hans">Christian S. Hans</name></author><author><name sortKey="Howell, Stacy" sort="Howell, Stacy" uniqKey="Howell S" first="Stacy" last="Howell">Stacy Howell</name></author><author><name sortKey="Ilut, Dan" sort="Ilut, Dan" uniqKey="Ilut D" first="Dan" last="Ilut">Dan Ilut</name></author><author><name sortKey="Jackson, Scott" sort="Jackson, Scott" uniqKey="Jackson S" first="Scott" last="Jackson">Scott Jackson</name></author><author><name sortKey="Lai, Hongshing" sort="Lai, Hongshing" uniqKey="Lai H" first="Hongshing" last="Lai">Hongshing Lai</name></author><author><name sortKey="Mammadov, Jafar" sort="Mammadov, Jafar" uniqKey="Mammadov J" first="Jafar" last="Mammadov">Jafar Mammadov</name></author><author><name sortKey="Del Campo, Sara Martin" sort="Del Campo, Sara Martin" uniqKey="Del Campo S" first="Sara Martin" last="Del Campo">Sara Martin Del Campo</name></author><author><name sortKey="Metcalf, Michelle" sort="Metcalf, Michelle" uniqKey="Metcalf M" first="Michelle" last="Metcalf">Michelle Metcalf</name></author><author><name sortKey="Nguyen, Ashley" sort="Nguyen, Ashley" uniqKey="Nguyen A" first="Ashley" last="Nguyen">Ashley Nguyen</name></author><author><name sortKey="O Bleness, Majesta" sort="O Bleness, Majesta" uniqKey="O Bleness M" first="Majesta" last="O'Bleness">Majesta O'Bleness</name></author><author><name sortKey="Pfeil, Bernard E" sort="Pfeil, Bernard E" uniqKey="Pfeil B" first="Bernard E." last="Pfeil">Bernard E. Pfeil</name></author><author><name sortKey="Podicheti, Ram" sort="Podicheti, Ram" uniqKey="Podicheti R" first="Ram" last="Podicheti">Ram Podicheti</name></author><author><name sortKey="Ratnaparkhe, Milind B" sort="Ratnaparkhe, Milind B" uniqKey="Ratnaparkhe M" first="Milind B." last="Ratnaparkhe">Milind B. Ratnaparkhe</name></author><author><name sortKey="Samain, Sylvie" sort="Samain, Sylvie" uniqKey="Samain S" first="Sylvie" last="Samain">Sylvie Samain</name></author><author><name sortKey="Sanders, Iryna" sort="Sanders, Iryna" uniqKey="Sanders I" first="Iryna" last="Sanders">Iryna Sanders</name></author><author><name sortKey="Segurens, Beatrice" sort="Segurens, Beatrice" uniqKey="Segurens B" first="Béatrice" last="Ségurens">Béatrice Ségurens</name></author><author><name sortKey="Sevignac, Mireille" sort="Sevignac, Mireille" uniqKey="Sevignac M" first="Mireille" last="Sévignac">Mireille Sévignac</name></author><author><name sortKey="Sherman Broyles, Sue" sort="Sherman Broyles, Sue" uniqKey="Sherman Broyles S" first="Sue" last="Sherman-Broyles">Sue Sherman-Broyles</name></author><author><name sortKey="Thareau, Vincent" sort="Thareau, Vincent" uniqKey="Thareau V" first="Vincent" last="Thareau">Vincent Thareau</name></author><author><name sortKey="Tucker, Dominic M" sort="Tucker, Dominic M" uniqKey="Tucker D" first="Dominic M." last="Tucker">Dominic M. Tucker</name></author><author><name sortKey="Walling, Jason" sort="Walling, Jason" uniqKey="Walling J" first="Jason" last="Walling">Jason Walling</name></author><author><name sortKey="Wawrzynski, Adam" sort="Wawrzynski, Adam" uniqKey="Wawrzynski A" first="Adam" last="Wawrzynski">Adam Wawrzynski</name></author><author><name sortKey="Yi, Jing" sort="Yi, Jing" uniqKey="Yi J" first="Jing" last="Yi">Jing Yi</name></author><author><name sortKey="Doyle, Jeff J" sort="Doyle, Jeff J" uniqKey="Doyle J" first="Jeff J." last="Doyle">Jeff J. Doyle</name></author><author><name sortKey="Geffroy, Valerie" sort="Geffroy, Valerie" uniqKey="Geffroy V" first="Valérie" last="Geffroy">Valérie Geffroy</name></author><author><name sortKey="Roe, Bruce A" sort="Roe, Bruce A" uniqKey="Roe B" first="Bruce A." last="Roe">Bruce A. Roe</name></author><author><name sortKey="Maroof, M A Saghai" sort="Maroof, M A Saghai" uniqKey="Maroof M" first="M. A. Saghai" last="Maroof">M. A. Saghai Maroof</name></author><author><name sortKey="Young, Nevin D" sort="Young, Nevin D" uniqKey="Young N" first="Nevin D." last="Young">Nevin D. Young</name></author></analytic><series><title level="j">Plant Physiology</title><idno type="ISSN">0032-0889</idno><idno type="eISSN">1532-2548</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The genomes of most, if not all, flowering plants have undergone whole genome duplication events during their evolution. The impact of such polyploidy events is poorly understood, as is the fate of most duplicated genes. We sequenced an approximately 1 million-bp region in soybean (<italic>Glycine max</italic>) centered on the <italic>Rpg1-b</italic> disease resistance gene and compared this region with a region duplicated 10 to 14 million years ago. These two regions were also compared with homologous regions in several related legume species (a second soybean genotype, <italic>Glycine tomentella</italic>, <italic>Phaseolus vulgaris</italic>, and <italic>Medicago truncatula</italic>), which enabled us to determine how each of the duplicated regions (homoeologues) in soybean has changed following polyploidy. The biggest change was in retroelement content, with homoeologue 2 having expanded to 3-fold the size of homoeologue 1. Despite this accumulation of retroelements, over 77% of the duplicated low-copy genes have been retained in the same order and appear to be functional. This finding contrasts with recent analyses of the maize (<italic>Zea mays</italic>) genome, in which only about one-third of duplicated genes appear to have been retained over a similar time period. Fluorescent in situ hybridization revealed that the homoeologue 2 region is located very near a centromere. Thus, pericentromeric localization, per se, does not result in a high rate of gene inactivation, despite greatly accelerated retrotransposon accumulation. In contrast to low-copy genes, nucleotide-binding-leucine-rich repeat disease resistance gene clusters have undergone dramatic species/homoeologue-specific duplications and losses, with some evidence for partitioning of subfamilies between homoeologues.</p></div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Ncbi/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000456 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd -nk 000456 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Asie
|area= AustralieFrV1
|flux= Ncbi
|étape= Curation
|type= RBID
|clé= PMC:2593655
|texte= Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean1[W][OA]
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/RBID.i -Sk "pubmed:18842825" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd \
| NlmPubMed2Wicri -a AustralieFrV1
| This area was generated with Dilib version V0.6.33. |  |