Interspecific variations in the gastrointestinal microbiota in penguins
Identifieur interne : 004628 ( Main/Exploration ); précédent : 004627; suivant : 004629Interspecific variations in the gastrointestinal microbiota in penguins
Auteurs : Meagan L. Dewar [Australie] ; John P Y. Arnould [Australie] ; Peter Dann [Australie] ; Phil Trathan [Royaume-Uni] ; Rene Groscolas [France] ; Stuart Smith [Australie]Source :
- MicrobiologyOpen [ 2045-8827 ] ; 2013.
Abstract
Despite the enormous amount of data available on the importance of the gastrointestinal (GI) microbiota in vertebrate (especially mammals), information on the GI microbiota of seabirds remains incomplete. As with many seabirds, penguins have a unique digestive physiology that enables them to store large reserves of adipose tissue, protein, and lipids. This study used quantitative real-time polymerase chain reaction (qPCR) and 16S rRNA gene pyrosequencing to characterize the interspecific variations of the GI microbiota of four penguin species: the king, gentoo, macaroni, and little penguin. The qPCR results indicated that there were significant differences in the abundance of the major phyla Firmicutes, Bacteroides, Actinobacteria, and Proteobacteria. A total of 132,340, 18,336, 6324, and 4826 near full-length 16S rRNA gene sequences were amplified from fecal samples collected from king, gentoo, macaroni, and little penguins, respectively. A total of 13 phyla were identified with Firmicutes, Bacteroidetes, Proteobacteria, and Fusobacteria dominating the composition; however, there were major differences in the relative abundance of the phyla. In addition, this study documented the presence of known human pathogens, such as
Url:
DOI: 10.1002/mbo3.66
PubMed: 23349094
PubMed Central: 3584224
Affiliations:
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Dewar</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>School of Exercise and Nutritional Sciences, Deakin University</institution><addr-line>Burwood, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Burwood</wicri:regionArea></affiliation></author><author><name sortKey="Arnould, John P Y" sort="Arnould, John P Y" uniqKey="Arnould J" first="John P Y" last="Arnould">John P Y. Arnould</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>School of Life and Environmental Sciences, Deakin University</institution><addr-line>Burwood, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Burwood</wicri:regionArea></affiliation></author><author><name sortKey="Dann, Peter" sort="Dann, Peter" uniqKey="Dann P" first="Peter" last="Dann">Peter Dann</name><affiliation wicri:level="1"><nlm:aff id="au3"><institution>Research Department, Phillip Island Nature Parks</institution><addr-line>Phillip Island, Victoria, 3922, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Phillip Island, Victoria, 3922</wicri:regionArea><wicri:noRegion>3922</wicri:noRegion></affiliation></author><author><name sortKey="Trathan, Phil" sort="Trathan, Phil" uniqKey="Trathan P" first="Phil" last="Trathan">Phil Trathan</name><affiliation wicri:level="1"><nlm:aff id="au4"><institution>British Antarctic Survey, High Cross</institution><addr-line>Madingley Road, Cambridge, CB3 0ET, U.K</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Madingley Road, Cambridge, CB3 0ET</wicri:regionArea><wicri:noRegion>CB3 0ET</wicri:noRegion></affiliation></author><author><name sortKey="Groscolas, Rene" sort="Groscolas, Rene" uniqKey="Groscolas R" first="Rene" last="Groscolas">Rene Groscolas</name><affiliation wicri:level="3"><nlm:aff id="au5"><institution>Centre d'Ecologie et Physiologie Energétiques, Centre National de la Recherche Scientifique (CNRS)</institution><addr-line>67087, Strasbourg, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>67087, Strasbourg</wicri:regionArea><placeName><region type="region">Grand Est</region><region type="old region">Alsace (région administrative)</region><settlement type="city">Strasbourg</settlement></placeName></affiliation></author><author><name sortKey="Smith, Stuart" sort="Smith, Stuart" uniqKey="Smith S" first="Stuart" last="Smith">Stuart Smith</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>School of Exercise and Nutritional Sciences, Deakin University</institution><addr-line>Burwood, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Burwood</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="au6"><institution>Molecular and Medical Strategic Research Centre, Deakin University</institution><addr-line>Burwood, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Burwood</wicri:regionArea></affiliation></author></analytic><series><title level="j">MicrobiologyOpen</title><idno type="ISSN">2045-8827</idno><idno type="eISSN">2045-8827</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Despite the enormous amount of data available on the importance of the gastrointestinal (GI) microbiota in vertebrate (especially mammals), information on the GI microbiota of seabirds remains incomplete. As with many seabirds, penguins have a unique digestive physiology that enables them to store large reserves of adipose tissue, protein, and lipids. This study used quantitative real-time polymerase chain reaction (qPCR) and 16S rRNA gene pyrosequencing to characterize the interspecific variations of the GI microbiota of four penguin species: the king, gentoo, macaroni, and little penguin. The qPCR results indicated that there were significant differences in the abundance of the major phyla Firmicutes, Bacteroides, Actinobacteria, and Proteobacteria. A total of 132,340, 18,336, 6324, and 4826 near full-length 16S rRNA gene sequences were amplified from fecal samples collected from king, gentoo, macaroni, and little penguins, respectively. A total of 13 phyla were identified with Firmicutes, Bacteroidetes, Proteobacteria, and Fusobacteria dominating the composition; however, there were major differences in the relative abundance of the phyla. In addition, this study documented the presence of known human pathogens, such as <italic>Campylobacter, Helicobacter, Prevotella, Veillonella, Erysipelotrichaceae, Neisseria,</italic> and <italic>Mycoplasma</italic>. However, their role in disease in penguins remains unknown. To our knowledge, this is the first study to provide an in-depth investigation of the GI microbiota of penguins.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Apajalahti, J" uniqKey="Apajalahti J">J Apajalahti</name></author><author><name sortKey="Kettunen, A" uniqKey="Kettunen A">A Kettunen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Banks, Jc" uniqKey="Banks J">JC Banks</name></author><author><name sortKey="Craig, S" uniqKey="Craig S">S Craig</name></author><author><name sortKey="Cary, I" uniqKey="Cary I">I Cary</name></author><author><name sortKey="Hogg, D" uniqKey="Hogg D">D Hogg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blackwood, Cb" uniqKey="Blackwood C">CB Blackwood</name></author><author><name sortKey="Oaks, A" uniqKey="Oaks A">A Oaks</name></author><author><name sortKey="Buyer, Js" uniqKey="Buyer J">JS 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Xy" uniqKey="Zhu X">XY Zhu</name></author><author><name sortKey="Zhong, T" uniqKey="Zhong T">T Zhong</name></author><author><name sortKey="Pandya, Y" uniqKey="Pandya Y">Y Pandya</name></author><author><name sortKey="Joerger, Rd" uniqKey="Joerger R">RD Joerger</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, L" uniqKey="Zhu L">L Zhu</name></author><author><name sortKey="Wu, Q" uniqKey="Wu Q">Q Wu</name></author><author><name sortKey="Dai, J" uniqKey="Dai J">J Dai</name></author><author><name sortKey="Zhang, S" uniqKey="Zhang S">S Zhang</name></author><author><name sortKey="Wei, F" uniqKey="Wei F">F Wei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zoetendal, Eg" uniqKey="Zoetendal E">EG Zoetendal</name></author><author><name sortKey="Cheng, B" uniqKey="Cheng B">B Cheng</name></author><author><name sortKey="Koike, S" uniqKey="Koike S">S Koike</name></author><author><name sortKey="Mackie, Ri" uniqKey="Mackie R">RI Mackie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zoetendal, Eg" uniqKey="Zoetendal E">EG Zoetendal</name></author><author><name sortKey="Collier, Ct" uniqKey="Collier C">CT Collier</name></author><author><name sortKey="Koike, S" uniqKey="Koike S">S Koike</name></author><author><name sortKey="Mackie, Ri" uniqKey="Mackie R">RI Mackie</name></author><author><name sortKey="Gaskins, Hr" uniqKey="Gaskins H">HR Gaskins</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Royaume-Uni</li></country><region><li>Alsace (région administrative)</li><li>Grand Est</li></region><settlement><li>Strasbourg</li></settlement></list><tree><country name="Australie"><noRegion><name sortKey="Dewar, Meagan L" sort="Dewar, Meagan L" uniqKey="Dewar M" first="Meagan L" last="Dewar">Meagan L. Dewar</name></noRegion><name sortKey="Arnould, John P Y" sort="Arnould, John P Y" uniqKey="Arnould J" first="John P Y" last="Arnould">John P Y. Arnould</name><name sortKey="Dann, Peter" sort="Dann, Peter" uniqKey="Dann P" first="Peter" last="Dann">Peter Dann</name><name sortKey="Smith, Stuart" sort="Smith, Stuart" uniqKey="Smith S" first="Stuart" last="Smith">Stuart Smith</name><name sortKey="Smith, Stuart" sort="Smith, Stuart" uniqKey="Smith S" first="Stuart" last="Smith">Stuart Smith</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Trathan, Phil" sort="Trathan, Phil" uniqKey="Trathan P" first="Phil" last="Trathan">Phil Trathan</name></noRegion></country><country name="France"><region name="Grand Est"><name sortKey="Groscolas, Rene" sort="Groscolas, Rene" uniqKey="Groscolas R" first="Rene" last="Groscolas">Rene Groscolas</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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