No more non-model species: The promise of Next Generation Sequencing for Comparative Immunology
Identifieur interne : 003682 ( Main/Exploration ); précédent : 003681; suivant : 003683No more non-model species: The promise of Next Generation Sequencing for Comparative Immunology
Auteurs : Nolwenn M. Dheilly [France] ; Adema Coen [États-Unis] ; David A. Raftos [Australie] ; Gourbal Benjamin [France] ; Grunau Christoph [France] ; Du Pasquier Louis [Suisse]Source :
- Developmental and comparative immunology [ 0145-305X ] ; 2014.
Descripteurs français
- KwdFr :
- Allergie et immunologie, Analyse de profil d'expression de gènes, Analyse de séquence d'ADN, Animaux, Humains, Interactions hôte-pathogène (génétique), Interactions hôte-pathogène (immunologie), Modèles animaux, Séquençage nucléotidique à haut débit, Transcriptome (immunologie), Épigenèse génétique (immunologie), Étude d'association pangénomique.
- MESH :
- génétique : Interactions hôte-pathogène.
- immunologie : Interactions hôte-pathogène, Transcriptome, Épigenèse génétique.
- Allergie et immunologie, Analyse de profil d'expression de gènes, Analyse de séquence d'ADN, Animaux, Humains, Modèles animaux, Séquençage nucléotidique à haut débit, Étude d'association pangénomique.
English descriptors
- KwdEn :
- Allergy and Immunology, Animals, Epigenesis, Genetic (immunology), Gene Expression Profiling, Genome-Wide Association Study, High-Throughput Nucleotide Sequencing, Host-Pathogen Interactions (genetics), Host-Pathogen Interactions (immunology), Humans, Models, Animal, Sequence Analysis, DNA, Transcriptome (immunology).
- MESH :
Abstract
Next generation sequencing (NGS) allows for the rapid, comprehensive and cost effective analysis of entire genomes and transcriptomes. NGS provides approaches for immune response gene discovery, profiling gene expression over the course of parasitosis, studying mechanisms of diversification of immune receptors and investigating the role of epigenetic mechanisms in regulating immune gene expression and/or diversification. NGS will allow meaningful comparisons to be made between organisms from different taxa in an effort to understand the selection of diverse strategies for host defence under different environmental pathogen pressures. At the same time, it will reveal the shared and unique components of the immunological toolkit and basic functional aspects that are essential for immune defence throughout the living world. In this review, we argue that NGS will revolutionize our understanding of immune responses throughout the animal kingdom because the depth of information it provides will circumvent the need to concentrate on a few “model” species.
Url:
DOI: 10.1016/j.dci.2014.01.022
PubMed: 24508980
PubMed Central: 4096995
Affiliations:
- Australie, France, Suisse, États-Unis
- Languedoc-Roussillon, Nouveau-Mexique, Occitanie (région administrative)
- Montpellier
- Université de Perpignan
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Le document en format XML
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xml:lang="fr"><term>Allergie et immunologie</term><term>Analyse de profil d'expression de gènes</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Humains</term><term>Interactions hôte-pathogène (génétique)</term><term>Interactions hôte-pathogène (immunologie)</term><term>Modèles animaux</term><term>Séquençage nucléotidique à haut débit</term><term>Transcriptome (immunologie)</term><term>Épigenèse génétique (immunologie)</term><term>Étude d'association pangénomique</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Host-Pathogen Interactions</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Interactions hôte-pathogène</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Interactions hôte-pathogène</term><term>Transcriptome</term><term>Épigenèse génétique</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Epigenesis, Genetic</term><term>Host-Pathogen Interactions</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Allergy and Immunology</term><term>Animals</term><term>Gene Expression Profiling</term><term>Genome-Wide Association Study</term><term>High-Throughput Nucleotide Sequencing</term><term>Humans</term><term>Models, Animal</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Allergie et immunologie</term><term>Analyse de profil d'expression de gènes</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Humains</term><term>Modèles animaux</term><term>Séquençage nucléotidique à haut débit</term><term>Étude d'association pangénomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">Next generation sequencing (NGS) allows for the rapid, comprehensive and cost effective analysis of entire genomes and transcriptomes. NGS provides approaches for immune response gene discovery, profiling gene expression over the course of parasitosis, studying mechanisms of diversification of immune receptors and investigating the role of epigenetic mechanisms in regulating immune gene expression and/or diversification. NGS will allow meaningful comparisons to be made between organisms from different taxa in an effort to understand the selection of diverse strategies for host defence under different environmental pathogen pressures. At the same time, it will reveal the shared and unique components of the immunological toolkit and basic functional aspects that are essential for immune defence throughout the living world. In this review, we argue that NGS will revolutionize our understanding of immune responses throughout the animal kingdom because the depth of information it provides will circumvent the need to concentrate on a few “model” species.</p></div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Suisse</li><li>États-Unis</li></country><region><li>Languedoc-Roussillon</li><li>Nouveau-Mexique</li><li>Occitanie (région administrative)</li></region><settlement><li>Montpellier</li></settlement><orgName><li>Université de Perpignan</li></orgName></list><tree><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Dheilly, Nolwenn M" sort="Dheilly, Nolwenn M" uniqKey="Dheilly N" first="Nolwenn M" last="Dheilly">Nolwenn M. Dheilly</name></region><name sortKey="Benjamin, Gourbal" sort="Benjamin, Gourbal" uniqKey="Benjamin G" first="Gourbal" last="Benjamin">Gourbal Benjamin</name><name sortKey="Benjamin, Gourbal" sort="Benjamin, Gourbal" uniqKey="Benjamin G" first="Gourbal" last="Benjamin">Gourbal Benjamin</name><name sortKey="Christoph, Grunau" sort="Christoph, Grunau" uniqKey="Christoph G" first="Grunau" last="Christoph">Grunau Christoph</name><name sortKey="Christoph, Grunau" sort="Christoph, Grunau" uniqKey="Christoph G" first="Grunau" last="Christoph">Grunau Christoph</name><name sortKey="Dheilly, Nolwenn M" sort="Dheilly, Nolwenn M" uniqKey="Dheilly N" first="Nolwenn M" last="Dheilly">Nolwenn M. Dheilly</name></country><country name="États-Unis"><region name="Nouveau-Mexique"><name sortKey="Coen, Adema" sort="Coen, Adema" uniqKey="Coen A" first="Adema" last="Coen">Adema Coen</name></region></country><country name="Australie"><noRegion><name sortKey="Raftos, David A" sort="Raftos, David A" uniqKey="Raftos D" first="David A" last="Raftos">David A. Raftos</name></noRegion></country><country name="Suisse"><noRegion><name sortKey="Louis, Du Pasquier" sort="Louis, Du Pasquier" uniqKey="Louis D" first="Du Pasquier" last="Louis">Du Pasquier Louis</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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