Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum
Identifieur interne : 002173 ( Main/Exploration ); précédent : 002172; suivant : 002174Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum
Auteurs : Sofia A. V. Fortunato [Norvège] ; Michel Vervoort [France] ; Marcin Adamski [Norvège, Australie] ; Maja Adamska [Norvège, Australie]Source :
- EvoDevo [ 2041-9139 ] ; 2016.
Abstract
Basic Helix-Loop-Helix (bHLH) genes encode a large family of eukaryotic transcription factors, categorized into six high-order groups: pan-eukaryotic group B involved in regulation of cell cycle, metabolism, and development; holozoan-specific groups C and F involved in development and maintenance of homeostasis; and metazoan-specific groups A, D and E including well-studied genes, such as
Given recently discovered differences in developmental toolkit components between siliceous and calcareous sponges, we have carried out genome-wide analysis of bHLH genes in
Our results demonstrate independent gene loss events in demosponges and calcisponges, implying a complex bHLH toolkit in the last common metazoan ancestor.
The online version of this article (doi:10.1186/s13227-016-0060-8) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s13227-016-0060-8
PubMed: 27757221
PubMed Central: 5064789
Affiliations:
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V." last="Fortunato">Sofia A. V. Fortunato</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway</nlm:aff><country xml:lang="fr">Norvège</country><wicri:regionArea>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen</wicri:regionArea><wicri:noRegion>Bergen</wicri:noRegion></affiliation><affiliation><nlm:aff id="Aff3">ARC Centre for Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811 Australia</nlm:aff><wicri:noCountry code="subfield">QLD 4811 Australia</wicri:noCountry></affiliation></author><author><name sortKey="Vervoort, Michel" sort="Vervoort, Michel" uniqKey="Vervoort M" first="Michel" last="Vervoort">Michel Vervoort</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Institut Jacques Monod – CNRS, Université Paris Diderot, 75005 Paris Cedex 13, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Jacques Monod – CNRS, Université Paris Diderot, 75005 Paris Cedex 13</wicri:regionArea><wicri:noRegion>75005 Paris Cedex 13</wicri:noRegion><wicri:noRegion>75005 Paris Cedex 13</wicri:noRegion></affiliation></author><author><name sortKey="Adamski, Marcin" sort="Adamski, Marcin" uniqKey="Adamski M" first="Marcin" last="Adamski">Marcin Adamski</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway</nlm:aff><country xml:lang="fr">Norvège</country><wicri:regionArea>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen</wicri:regionArea><wicri:noRegion>Bergen</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff4">Research School of Biology, Australian National University, Canberra, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Research School of Biology, Australian National University, Canberra</wicri:regionArea><wicri:noRegion>Canberra</wicri:noRegion></affiliation></author><author><name sortKey="Adamska, Maja" sort="Adamska, Maja" uniqKey="Adamska M" first="Maja" last="Adamska">Maja Adamska</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway</nlm:aff><country xml:lang="fr">Norvège</country><wicri:regionArea>Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen</wicri:regionArea><wicri:noRegion>Bergen</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff4">Research School of Biology, Australian National University, Canberra, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Research School of Biology, Australian National University, Canberra</wicri:regionArea><wicri:noRegion>Canberra</wicri:noRegion></affiliation></author></analytic><series><title level="j">EvoDevo</title><idno type="eISSN">2041-9139</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Basic Helix-Loop-Helix (bHLH) genes encode a large family of eukaryotic transcription factors, categorized into six high-order groups: pan-eukaryotic group B involved in regulation of cell cycle, metabolism, and development; holozoan-specific groups C and F involved in development and maintenance of homeostasis; and metazoan-specific groups A, D and E including well-studied genes, such as <italic>Atonal</italic>, <italic>Twist</italic> and <italic>Hairy</italic>, with diverse developmental roles including control of morphogenesis and specification of neurons. Current scenarios of bHLH evolution in animals are mainly based on the bHLH gene set found in the genome of demosponge <italic>Amphimedon queenslandica.</italic> In this species, the majority of the 21 identified bHLH genes belong to group B, and the single group A gene is orthologous to several neurogenic bilaterian subfamilies, including <italic>atonal</italic> and <italic>neurogenin</italic>.</p></sec><sec><title>Results</title><p> Given recently discovered differences in developmental toolkit components between siliceous and calcareous sponges, we have carried out genome-wide analysis of bHLH genes in <italic>Sycon ciliatum</italic>, an emerging calcisponge model. We identified 30 bHLH genes in this species, representing 12 individual families, including four group A families not found in <italic>Amphimedon</italic>, and two larger family groupings. Notably, the families represented in <italic>Sycon</italic> are only partially overlapping with those represented in <italic>Amphimedon.</italic> Developmental expression analysis of a subset of the identified genes revealed patterns consistent with deeply conserved roles, such as specification of sensory cells by <italic>Atona</italic>-<italic>related</italic> and stem cells by <italic>Myc</italic> genes.</p></sec><sec><title>Conclusions</title><p> Our results demonstrate independent gene loss events in demosponges and calcisponges, implying a complex bHLH toolkit in the last common metazoan ancestor.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s13227-016-0060-8) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Massari, Me" uniqKey="Massari M">ME Massari</name></author><author><name 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sortKey="Bister, K" uniqKey="Bister K">K Bister</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hartl, M" uniqKey="Hartl M">M Hartl</name></author><author><name sortKey="Glasauer, S" uniqKey="Glasauer S">S Glasauer</name></author><author><name sortKey="Valovka, T" uniqKey="Valovka T">T Valovka</name></author><author><name sortKey="Breuker, K" uniqKey="Breuker K">K Breuker</name></author><author><name sortKey="Hobmayer, B" uniqKey="Hobmayer B">B Hobmayer</name></author><author><name sortKey="Bister, K" uniqKey="Bister K">K Bister</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Young, Sl" uniqKey="Young S">SL Young</name></author><author><name sortKey="Diolaiti, D" uniqKey="Diolaiti D">D Diolaiti</name></author><author><name sortKey="Conacci Sorrell, M" uniqKey="Conacci Sorrell M">M Conacci-Sorrell</name></author><author><name sortKey="Ruiz Trillo, I" uniqKey="Ruiz Trillo I">I Ruiz-Trillo</name></author><author><name sortKey="Eisenman, Rn" uniqKey="Eisenman R">RN Eisenman</name></author><author><name sortKey="King, N" uniqKey="King N">N King</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Funayama, N" uniqKey="Funayama N">N Funayama</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Norvège</li></country></list><tree><country name="Norvège"><noRegion><name sortKey="Fortunato, Sofia A V" sort="Fortunato, Sofia A V" uniqKey="Fortunato S" first="Sofia A. V." last="Fortunato">Sofia A. V. Fortunato</name></noRegion><name sortKey="Adamska, Maja" sort="Adamska, Maja" uniqKey="Adamska M" first="Maja" last="Adamska">Maja Adamska</name><name sortKey="Adamski, Marcin" sort="Adamski, Marcin" uniqKey="Adamski M" first="Marcin" last="Adamski">Marcin Adamski</name></country><country name="France"><noRegion><name sortKey="Vervoort, Michel" sort="Vervoort, Michel" uniqKey="Vervoort M" first="Michel" last="Vervoort">Michel Vervoort</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Adamski, Marcin" sort="Adamski, Marcin" uniqKey="Adamski M" first="Marcin" last="Adamski">Marcin Adamski</name></noRegion><name sortKey="Adamska, Maja" sort="Adamska, Maja" uniqKey="Adamska M" first="Maja" last="Adamska">Maja Adamska</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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