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Structural studies provide clues for analog design of specific inhibitors of Cryptosporidium hominis thymidylate synthase-dihydrofolate reductase.

Identifieur interne : 001A97 ( PubMed/Curation ); précédent : 001A96; suivant : 001A98

Structural studies provide clues for analog design of specific inhibitors of Cryptosporidium hominis thymidylate synthase-dihydrofolate reductase.

Auteurs : Vidya P. Kumar [États-Unis] ; Jose A. Cisneros [États-Unis] ; Kathleen M. Frey [États-Unis] ; Alejandro Castellanos-Gonzalez [États-Unis] ; Yiqiang Wang [États-Unis] ; Aleem Gangjee [États-Unis] ; A Clinton White [États-Unis] ; William L. Jorgensen [États-Unis] ; Karen S. Anderson [États-Unis]

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RBID : pubmed:25127103

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Abstract

Cryptosporidium is the causative agent of a gastrointestinal disease, cryptosporidiosis, which is often fatal in immunocompromised individuals and children. Thymidylate synthase (TS) and dihydrofolate reductase (DHFR) are essential enzymes in the folate biosynthesis pathway and are well established as drug targets in cancer, bacterial infections, and malaria. Cryptosporidium hominis has a bifunctional thymidylate synthase and dihydrofolate reductase enzyme, compared to separate enzymes in the host. We evaluated lead compound 1 from a novel series of antifolates, 2-amino-4-oxo-5-substituted pyrrolo[2,3-d]pyrimidines as an inhibitor of Cryptosporidium hominis thymidylate synthase with selectivity over the human enzyme. Complementing the enzyme inhibition compound 1 also has anti-cryptosporidial activity in cell culture. A crystal structure with compound 1 bound to the TS active site is discussed in terms of several van der Waals, hydrophobic and hydrogen bond interactions with the protein residues and the substrate analog 5-fluorodeoxyuridine monophosphate (TS), cofactor NADPH and inhibitor methotrexate (DHFR). Another crystal structure in complex with compound 1 bound in both the TS and DHFR active sites is also reported here. The crystal structures provide clues for analog design and for the design of ChTS-DHFR specific inhibitors.

DOI: 10.1016/j.bmcl.2014.07.049
PubMed: 25127103

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<term>Enzyme Inhibitors (chemical synthesis)</term>
<term>Enzyme Inhibitors (chemistry)</term>
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<term>Pyrroles (pharmacology)</term>
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<div type="abstract" xml:lang="en">Cryptosporidium is the causative agent of a gastrointestinal disease, cryptosporidiosis, which is often fatal in immunocompromised individuals and children. Thymidylate synthase (TS) and dihydrofolate reductase (DHFR) are essential enzymes in the folate biosynthesis pathway and are well established as drug targets in cancer, bacterial infections, and malaria. Cryptosporidium hominis has a bifunctional thymidylate synthase and dihydrofolate reductase enzyme, compared to separate enzymes in the host. We evaluated lead compound 1 from a novel series of antifolates, 2-amino-4-oxo-5-substituted pyrrolo[2,3-d]pyrimidines as an inhibitor of Cryptosporidium hominis thymidylate synthase with selectivity over the human enzyme. Complementing the enzyme inhibition compound 1 also has anti-cryptosporidial activity in cell culture. A crystal structure with compound 1 bound to the TS active site is discussed in terms of several van der Waals, hydrophobic and hydrogen bond interactions with the protein residues and the substrate analog 5-fluorodeoxyuridine monophosphate (TS), cofactor NADPH and inhibitor methotrexate (DHFR). Another crystal structure in complex with compound 1 bound in both the TS and DHFR active sites is also reported here. The crystal structures provide clues for analog design and for the design of ChTS-DHFR specific inhibitors.</div>
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<RefSource>J Antimicrob Chemother. 2000 Jul;46(1):57-60</RefSource>
<PMID Version="1">10882689</PMID>
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<CommentsCorrections RefType="Cites">
<RefSource>Chem Pharm Bull (Tokyo). 2001 Oct;49(10):1280-7</RefSource>
<PMID Version="1">11605654</PMID>
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<CommentsCorrections RefType="Cites">
<RefSource>Mol Biochem Parasitol. 1996 Aug;79(2):153-65</RefSource>
<PMID Version="1">8855552</PMID>
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<RefSource>Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Mar 1;61(Pt 3):258-62</RefSource>
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<PMID Version="1">17335543</PMID>
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<CommentsCorrections RefType="Cites">
<RefSource>Biochemistry. 2007 Jul 17;46(28):8379-91</RefSource>
<PMID Version="1">17580969</PMID>
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<RefSource>Biochemistry. 2008 Aug 26;47(34):8902-11</RefSource>
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<RefSource>Lancet. 2013 Jul 20;382(9888):209-22</RefSource>
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<RefSource>Bioorg Med Chem Lett. 2013 Oct 1;23(19):5426-8</RefSource>
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<CommentsCorrections RefType="Cites">
<RefSource>J Med Chem. 2013 Dec 27;56(24):10016-32</RefSource>
<PMID Version="1">24256410</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites">
<RefSource>Lancet Infect Dis. 2015 Jan;15(1):85-94</RefSource>
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<Keyword MajorTopicYN="N">Crystal structure</Keyword>
<Keyword MajorTopicYN="N">Dihydrofolate reductase</Keyword>
<Keyword MajorTopicYN="N">Inhibitor</Keyword>
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