Novel methodology to evaluate renal cysts in polycystic kidney disease.
Identifieur interne : 004287 ( PubMed/Corpus ); précédent : 004286; suivant : 004288Novel methodology to evaluate renal cysts in polycystic kidney disease.
Auteurs : Kyongtae T. Bae ; Hongliang Sun ; June Goo Lee ; Kyungsoo Bae ; Jinhong Wang ; Cheng Tao ; Arlene B. Chapman ; Vicente E. Torres ; Jared J. Grantham ; Michal Mrug ; William M. Bennett ; Michael F. Flessner ; Doug P. LandsittelSource :
- American journal of nephrology [ 1421-9670 ] ; 2014.
English descriptors
- KwdEn :
- Adolescent, Adult, Cysts (diagnosis), Cysts (pathology), Disease Progression, Female, Humans, Image Processing, Computer-Assisted, Kidney (pathology), Kidney (physiopathology), Magnetic Resonance Imaging (methods), Male, Middle Aged, Pattern Recognition, Automated, Polycystic Kidney, Autosomal Dominant (diagnosis), Polycystic Kidney, Autosomal Dominant (pathology), Young Adult.
- MESH :
- diagnosis : Cysts, Polycystic Kidney, Autosomal Dominant.
- methods : Magnetic Resonance Imaging.
- pathology : Cysts, Kidney, Polycystic Kidney, Autosomal Dominant.
- physiopathology : Kidney.
- Adolescent, Adult, Disease Progression, Female, Humans, Image Processing, Computer-Assisted, Male, Middle Aged, Pattern Recognition, Automated, Young Adult.
Abstract
To develop and assess a semiautomated method for segmenting and counting individual renal cysts from mid-slice MR images in patients with autosomal dominant polycystic kidney disease (ADPKD).
DOI: 10.1159/000358604
PubMed: 24576800
Links to Exploration step
pubmed:24576800Le document en format XML
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Bae</name><affiliation><nlm:affiliation>Department of Radiology, University of Pittsburgh School of Medicine, Pittsburgh, Pa., USA.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Hongliang" sort="Sun, Hongliang" uniqKey="Sun H" first="Hongliang" last="Sun">Hongliang Sun</name></author><author><name sortKey="Lee, June Goo" sort="Lee, June Goo" uniqKey="Lee J" first="June Goo" last="Lee">June Goo Lee</name></author><author><name sortKey="Bae, Kyungsoo" sort="Bae, Kyungsoo" uniqKey="Bae K" first="Kyungsoo" last="Bae">Kyungsoo Bae</name></author><author><name sortKey="Wang, Jinhong" sort="Wang, Jinhong" uniqKey="Wang J" first="Jinhong" last="Wang">Jinhong Wang</name></author><author><name sortKey="Tao, Cheng" sort="Tao, Cheng" uniqKey="Tao C" first="Cheng" last="Tao">Cheng Tao</name></author><author><name sortKey="Chapman, Arlene B" sort="Chapman, Arlene B" uniqKey="Chapman A" first="Arlene B" last="Chapman">Arlene B. Chapman</name></author><author><name sortKey="Torres, Vicente E" sort="Torres, Vicente E" uniqKey="Torres V" first="Vicente E" last="Torres">Vicente E. Torres</name></author><author><name sortKey="Grantham, Jared J" sort="Grantham, Jared J" uniqKey="Grantham J" first="Jared J" last="Grantham">Jared J. Grantham</name></author><author><name sortKey="Mrug, Michal" sort="Mrug, Michal" uniqKey="Mrug M" first="Michal" last="Mrug">Michal Mrug</name></author><author><name sortKey="Bennett, William M" sort="Bennett, William M" uniqKey="Bennett W" first="William M" last="Bennett">William M. Bennett</name></author><author><name sortKey="Flessner, Michael F" sort="Flessner, Michael F" uniqKey="Flessner M" first="Michael F" last="Flessner">Michael F. Flessner</name></author><author><name sortKey="Landsittel, Doug P" sort="Landsittel, Doug P" uniqKey="Landsittel D" first="Doug P" last="Landsittel">Doug P. Landsittel</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24576800</idno><idno type="pmid">24576800</idno><idno type="doi">10.1159/000358604</idno><idno type="wicri:Area/PubMed/Corpus">004287</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">004287</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Novel methodology to evaluate renal cysts in polycystic kidney disease.</title><author><name sortKey="Bae, Kyongtae T" sort="Bae, Kyongtae T" uniqKey="Bae K" first="Kyongtae T" last="Bae">Kyongtae T. Bae</name><affiliation><nlm:affiliation>Department of Radiology, University of Pittsburgh School of Medicine, Pittsburgh, Pa., USA.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Hongliang" sort="Sun, Hongliang" uniqKey="Sun H" first="Hongliang" last="Sun">Hongliang Sun</name></author><author><name sortKey="Lee, June Goo" sort="Lee, June Goo" uniqKey="Lee J" first="June Goo" last="Lee">June Goo Lee</name></author><author><name sortKey="Bae, Kyungsoo" sort="Bae, Kyungsoo" uniqKey="Bae K" first="Kyungsoo" last="Bae">Kyungsoo Bae</name></author><author><name sortKey="Wang, Jinhong" sort="Wang, Jinhong" uniqKey="Wang J" first="Jinhong" last="Wang">Jinhong Wang</name></author><author><name sortKey="Tao, Cheng" sort="Tao, Cheng" uniqKey="Tao C" first="Cheng" last="Tao">Cheng Tao</name></author><author><name sortKey="Chapman, Arlene B" sort="Chapman, Arlene B" uniqKey="Chapman A" first="Arlene B" last="Chapman">Arlene B. Chapman</name></author><author><name sortKey="Torres, Vicente E" sort="Torres, Vicente E" uniqKey="Torres V" first="Vicente E" last="Torres">Vicente E. Torres</name></author><author><name sortKey="Grantham, Jared J" sort="Grantham, Jared J" uniqKey="Grantham J" first="Jared J" last="Grantham">Jared J. Grantham</name></author><author><name sortKey="Mrug, Michal" sort="Mrug, Michal" uniqKey="Mrug M" first="Michal" last="Mrug">Michal Mrug</name></author><author><name sortKey="Bennett, William M" sort="Bennett, William M" uniqKey="Bennett W" first="William M" last="Bennett">William M. Bennett</name></author><author><name sortKey="Flessner, Michael F" sort="Flessner, Michael F" uniqKey="Flessner M" first="Michael F" last="Flessner">Michael F. Flessner</name></author><author><name sortKey="Landsittel, Doug P" sort="Landsittel, Doug P" uniqKey="Landsittel D" first="Doug P" last="Landsittel">Doug P. Landsittel</name></author></analytic><series><title level="j">American journal of nephrology</title><idno type="eISSN">1421-9670</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Cysts (diagnosis)</term><term>Cysts (pathology)</term><term>Disease Progression</term><term>Female</term><term>Humans</term><term>Image Processing, Computer-Assisted</term><term>Kidney (pathology)</term><term>Kidney (physiopathology)</term><term>Magnetic Resonance Imaging (methods)</term><term>Male</term><term>Middle Aged</term><term>Pattern Recognition, Automated</term><term>Polycystic Kidney, Autosomal Dominant (diagnosis)</term><term>Polycystic Kidney, Autosomal Dominant (pathology)</term><term>Young Adult</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Cysts</term><term>Polycystic Kidney, Autosomal Dominant</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Magnetic Resonance Imaging</term></keywords><keywords scheme="MESH" qualifier="pathology" xml:lang="en"><term>Cysts</term><term>Kidney</term><term>Polycystic Kidney, Autosomal Dominant</term></keywords><keywords scheme="MESH" qualifier="physiopathology" xml:lang="en"><term>Kidney</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Disease Progression</term><term>Female</term><term>Humans</term><term>Image Processing, Computer-Assisted</term><term>Male</term><term>Middle Aged</term><term>Pattern Recognition, Automated</term><term>Young Adult</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">To develop and assess a semiautomated method for segmenting and counting individual renal cysts from mid-slice MR images in patients with autosomal dominant polycystic kidney disease (ADPKD).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24576800</PMID><DateCreated><Year>2014</Year><Month>04</Month><Day>09</Day></DateCreated><DateCompleted><Year>2014</Year><Month>12</Month><Day>03</Day></DateCompleted><DateRevised><Year>2016</Year><Month>12</Month><Day>15</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1421-9670</ISSN><JournalIssue CitedMedium="Internet"><Volume>39</Volume><Issue>3</Issue><PubDate><Year>2014</Year></PubDate></JournalIssue><Title>American journal of nephrology</Title><ISOAbbreviation>Am. J. Nephrol.</ISOAbbreviation></Journal><ArticleTitle>Novel methodology to evaluate renal cysts in polycystic kidney disease.</ArticleTitle><Pagination><MedlinePgn>210-7</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1159/000358604</ELocationID><Abstract><AbstractText Label="AIM" NlmCategory="OBJECTIVE">To develop and assess a semiautomated method for segmenting and counting individual renal cysts from mid-slice MR images in patients with autosomal dominant polycystic kidney disease (ADPKD).</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">A semiautomated method was developed to segment and count individual renal cysts from mid-slice MR images in 241 subjects with ADPKD from the Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease. For each subject, a mid-slice MR image was selected from each set of coronal T2-weighted MR images covering the entire kidney. The selected mid-slice image was processed with the semiautomated method to segment and count individual renal cysts. The number of cysts from the mid-slice image of each kidney was also measured by manual counting. The level of agreement between the semiautomated and manual cyst counts was compared using intraclass correlation (ICC) and a Bland-Altman plot.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Individual renal cysts were successfully segmented using the semiautomated method in all 241 cases. The number of cysts in each kidney measured with the semiautomated and manual counting methods correlated well (ICC = 0.96 for the right or left kidney), with a small average difference (-0.52, with higher semiautomated counts, for the right kidney, and 0.13, with higher manual counts, for the left kidney) in the semiautomated method. However, there was substantial variation in a small number of subjects; 6 of 241 participants (2.5%) had a difference in the total cyst count of more than 15.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">We have developed a semiautomated method to segment individual renal cysts from mid-slice MR images in ADPKD kidneys as a quantitative indicator of characterization and disease progression of ADPKD.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bae</LastName><ForeName>Kyongtae T</ForeName><Initials>KT</Initials><AffiliationInfo><Affiliation>Department of Radiology, University of Pittsburgh School of Medicine, Pittsburgh, Pa., USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Hongliang</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>June Goo</ForeName><Initials>JG</Initials></Author><Author ValidYN="Y"><LastName>Bae</LastName><ForeName>Kyungsoo</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Jinhong</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Tao</LastName><ForeName>Cheng</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Chapman</LastName><ForeName>Arlene B</ForeName><Initials>AB</Initials></Author><Author ValidYN="Y"><LastName>Torres</LastName><ForeName>Vicente E</ForeName><Initials>VE</Initials></Author><Author ValidYN="Y"><LastName>Grantham</LastName><ForeName>Jared J</ForeName><Initials>JJ</Initials></Author><Author ValidYN="Y"><LastName>Mrug</LastName><ForeName>Michal</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Bennett</LastName><ForeName>William M</ForeName><Initials>WM</Initials></Author><Author ValidYN="Y"><LastName>Flessner</LastName><ForeName>Michael F</ForeName><Initials>MF</Initials></Author><Author ValidYN="Y"><LastName>Landsittel</LastName><ForeName>Doug P</ForeName><Initials>DP</Initials></Author><Author ValidYN="Y"><CollectiveName>Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease</CollectiveName></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>RR00585</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>M01 RR000585</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR025777</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 TR000005</GrantID><Acronym>TR</Acronym><Agency>NCATS NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U01 DK056956</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1TR000165</GrantID><Acronym>TR</Acronym><Agency>NCATS NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 RR024153</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>DK056956</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 TR000165</GrantID><Acronym>TR</Acronym><Agency>NCATS NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR033179</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U01 DK056957</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>M01 RR000039</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 RR033179</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>DK056957</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1TR000005</GrantID><Acronym>TR</Acronym><Agency>NCATS NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>DK056961</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>M01 RR023940</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U01 DK056943</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 RR025777</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR000032</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 TR000454</GrantID><Acronym>TR</Acronym><Agency>NCATS NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U01 DK056961</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>M01 RR000032</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 RR024150</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR000039</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR024150</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>DK056943</GrantID><Acronym>DK</Acronym><Agency>NIDDK NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR024153</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>UL1 RR025008</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR23940</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>RR025008</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016430">Clinical Trial</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>02</Month><Day>22</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Am J Nephrol</MedlineTA><NlmUniqueID>8109361</NlmUniqueID><ISSNLinking>0250-8095</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Med Image Comput Comput Assist Interv. 2011;14(Pt 3):587-94</RefSource><PMID Version="1">22003747</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Clin J Am Soc Nephrol. 2011 Feb;6(2):369-76</RefSource><PMID Version="1">21115621</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Clin J Am Soc Nephrol. 2012 Jul;7(7):1087-93</RefSource><PMID Version="1">22580785</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>AJR Am J Roentgenol. 2012 Nov;199(5):1060-9</RefSource><PMID Version="1">23096180</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Clin J Am Soc Nephrol. 2013 Jul;8(7):1089-97</RefSource><PMID Version="1">23520042</PMID></CommentsCorrections><CommentsCorrections 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MajorTopicYN="N">Adolescent</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003560" MajorTopicYN="N">Cysts</DescriptorName><QualifierName UI="Q000175" MajorTopicYN="Y">diagnosis</QualifierName><QualifierName UI="Q000473" MajorTopicYN="Y">pathology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018450" MajorTopicYN="N">Disease Progression</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007091" MajorTopicYN="N">Image Processing, Computer-Assisted</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007668" MajorTopicYN="N">Kidney</DescriptorName><QualifierName UI="Q000473" MajorTopicYN="Y">pathology</QualifierName><QualifierName UI="Q000503" MajorTopicYN="N">physiopathology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008279" MajorTopicYN="N">Magnetic Resonance Imaging</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008875" MajorTopicYN="N">Middle Aged</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010363" MajorTopicYN="N">Pattern Recognition, Automated</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016891" MajorTopicYN="N">Polycystic Kidney, Autosomal Dominant</DescriptorName><QualifierName UI="Q000175" MajorTopicYN="Y">diagnosis</QualifierName><QualifierName UI="Q000473" MajorTopicYN="Y">pathology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055815" MajorTopicYN="N">Young Adult</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">NIHMS559043</OtherID><OtherID 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