Mageeibacillus indolicus gen. nov., sp. nov.: a novel bacterium isolated from the female genital tract.
Identifieur interne : 000350 ( PubMed/Corpus ); précédent : 000349; suivant : 000351Mageeibacillus indolicus gen. nov., sp. nov.: a novel bacterium isolated from the female genital tract.
Auteurs : Michele N. Austin ; Lorna K. Rabe ; Sujatha Srinivasan ; David N. Fredricks ; Harold C. Wiesenfeld ; Sharon L. HillierSource :
- Anaerobe [ 1095-8274 ] ; 2015.
English descriptors
- KwdEn :
- DNA, Bacterial, Female, Firmicutes (classification), Firmicutes (drug effects), Firmicutes (isolation & purification), Firmicutes (metabolism), Genital Diseases, Female (microbiology), Genitalia, Female (microbiology), Gram-Positive Bacterial Infections (microbiology), Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S (genetics), Vaginosis, Bacterial (microbiology).
- MESH :
- chemical , genetics : RNA, Ribosomal, 16S.
- chemical : DNA, Bacterial.
- classification : Firmicutes.
- drug effects : Firmicutes.
- isolation & purification : Firmicutes.
- metabolism : Firmicutes.
- microbiology : Genital Diseases, Female, Genitalia, Female, Gram-Positive Bacterial Infections, Vaginosis, Bacterial.
- Female, Humans, Molecular Sequence Data, Phylogeny.
Abstract
Three isolates of a bacterium recovered from human endometrium using conventional culture methods were characterized biochemically and subjected to 16S rRNA gene sequencing and phylogenetic analysis. Isolates were non-motile, obligately anaerobic, non-spore forming, asaccharolytic, non-cellulolytic, indole positive, Gram positive rods. Cell wall fatty acid profiling revealed C14:0, C16:0, C18:2 ω6, 9c, C18:1 ω9c and C18:0 to be the major fatty acid composition. The DNA mol % G+C was determined to be 44.2%. 16S rRNA gene sequence analysis revealed only 91% sequence similarity with the closest cultivated bacterial isolate, Saccharofermentans acetigenes. Based on genotypic and phenotypic data, all three isolates are considered to be members of the same species and data suggest it represents a novel genus and species in the order Clostridiales with an association with Clostridium rRNA cluster III within the family Ruminococcaceae. We propose the name, Mageeibacillus indolicus gen. nov., sp. nov. The type strain is BAA-2120(T) and CCUG 59143(T).
DOI: 10.1016/j.anaerobe.2014.12.003
PubMed: 25482717
Links to Exploration step
pubmed:25482717Le document en format XML
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Rabe</name><affiliation><nlm:affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Srinivasan, Sujatha" sort="Srinivasan, Sujatha" uniqKey="Srinivasan S" first="Sujatha" last="Srinivasan">Sujatha Srinivasan</name><affiliation><nlm:affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Fredricks, David N" sort="Fredricks, David N" uniqKey="Fredricks D" first="David N" last="Fredricks">David N. Fredricks</name><affiliation><nlm:affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wiesenfeld, Harold C" sort="Wiesenfeld, Harold C" uniqKey="Wiesenfeld H" first="Harold C" last="Wiesenfeld">Harold C. 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Fredricks</name><affiliation><nlm:affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wiesenfeld, Harold C" sort="Wiesenfeld, Harold C" uniqKey="Wiesenfeld H" first="Harold C" last="Wiesenfeld">Harold C. Wiesenfeld</name><affiliation><nlm:affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA; University of Pittsburgh, Department of Obstetrics, Gynecology, and Reproductive Sciences, Pittsburgh, PA, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Hillier, Sharon L" sort="Hillier, Sharon L" uniqKey="Hillier S" first="Sharon L" last="Hillier">Sharon L. Hillier</name><affiliation><nlm:affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA; University of Pittsburgh, Department of Obstetrics, Gynecology, and Reproductive Sciences, Pittsburgh, PA, USA.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Anaerobe</title><idno type="eISSN">1095-8274</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Bacterial</term><term>Female</term><term>Firmicutes (classification)</term><term>Firmicutes (drug effects)</term><term>Firmicutes (isolation & purification)</term><term>Firmicutes (metabolism)</term><term>Genital Diseases, Female (microbiology)</term><term>Genitalia, Female (microbiology)</term><term>Gram-Positive Bacterial Infections (microbiology)</term><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Vaginosis, Bacterial (microbiology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Bacterial</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Firmicutes</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Firmicutes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Firmicutes</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Firmicutes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Genital Diseases, Female</term><term>Genitalia, Female</term><term>Gram-Positive Bacterial Infections</term><term>Vaginosis, Bacterial</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Female</term><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Three isolates of a bacterium recovered from human endometrium using conventional culture methods were characterized biochemically and subjected to 16S rRNA gene sequencing and phylogenetic analysis. Isolates were non-motile, obligately anaerobic, non-spore forming, asaccharolytic, non-cellulolytic, indole positive, Gram positive rods. Cell wall fatty acid profiling revealed C14:0, C16:0, C18:2 ω6, 9c, C18:1 ω9c and C18:0 to be the major fatty acid composition. The DNA mol % G+C was determined to be 44.2%. 16S rRNA gene sequence analysis revealed only 91% sequence similarity with the closest cultivated bacterial isolate, Saccharofermentans acetigenes. Based on genotypic and phenotypic data, all three isolates are considered to be members of the same species and data suggest it represents a novel genus and species in the order Clostridiales with an association with Clostridium rRNA cluster III within the family Ruminococcaceae. We propose the name, Mageeibacillus indolicus gen. nov., sp. nov. The type strain is BAA-2120(T) and CCUG 59143(T).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25482717</PMID><DateCreated><Year>2015</Year><Month>04</Month><Day>03</Day></DateCreated><DateCompleted><Year>2015</Year><Month>12</Month><Day>21</Day></DateCompleted><DateRevised><Year>2016</Year><Month>10</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1095-8274</ISSN><JournalIssue CitedMedium="Internet"><Volume>32</Volume><PubDate><Year>2015</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Anaerobe</Title><ISOAbbreviation>Anaerobe</ISOAbbreviation></Journal><ArticleTitle>Mageeibacillus indolicus gen. nov., sp. nov.: a novel bacterium isolated from the female genital tract.</ArticleTitle><Pagination><MedlinePgn>37-42</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.anaerobe.2014.12.003</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S1075-9964(14)00177-2</ELocationID><Abstract><AbstractText>Three isolates of a bacterium recovered from human endometrium using conventional culture methods were characterized biochemically and subjected to 16S rRNA gene sequencing and phylogenetic analysis. Isolates were non-motile, obligately anaerobic, non-spore forming, asaccharolytic, non-cellulolytic, indole positive, Gram positive rods. Cell wall fatty acid profiling revealed C14:0, C16:0, C18:2 ω6, 9c, C18:1 ω9c and C18:0 to be the major fatty acid composition. The DNA mol % G+C was determined to be 44.2%. 16S rRNA gene sequence analysis revealed only 91% sequence similarity with the closest cultivated bacterial isolate, Saccharofermentans acetigenes. Based on genotypic and phenotypic data, all three isolates are considered to be members of the same species and data suggest it represents a novel genus and species in the order Clostridiales with an association with Clostridium rRNA cluster III within the family Ruminococcaceae. We propose the name, Mageeibacillus indolicus gen. nov., sp. nov. The type strain is BAA-2120(T) and CCUG 59143(T).</AbstractText><CopyrightInformation>Copyright © 2014 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Austin</LastName><ForeName>Michele N</ForeName><Initials>MN</Initials><AffiliationInfo><Affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA. Electronic address: maustin@mwri.magee.edu.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rabe</LastName><ForeName>Lorna K</ForeName><Initials>LK</Initials><AffiliationInfo><Affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Srinivasan</LastName><ForeName>Sujatha</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fredricks</LastName><ForeName>David N</ForeName><Initials>DN</Initials><AffiliationInfo><Affiliation>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wiesenfeld</LastName><ForeName>Harold C</ForeName><Initials>HC</Initials><AffiliationInfo><Affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA; University of Pittsburgh, Department of Obstetrics, Gynecology, and Reproductive Sciences, Pittsburgh, PA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hillier</LastName><ForeName>Sharon L</ForeName><Initials>SL</Initials><AffiliationInfo><Affiliation>Magee-Womens Research Institute, 204 Craft Avenue, Lab A530, Pittsburgh, PA, USA; University of Pittsburgh, Department of Obstetrics, Gynecology, and Reproductive Sciences, Pittsburgh, PA, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList 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DateType="Electronic"><Year>2014</Year><Month>12</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Anaerobe</MedlineTA><NlmUniqueID>9505216</NlmUniqueID><ISSNLinking>1075-9964</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):853-8</RefSource><PMID Version="1">15774674</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>N Engl J Med. 2005 Nov 3;353(18):1899-911</RefSource><PMID Version="1">16267321</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Infect Dis. 2006 Jun 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RefType="Cites"><RefSource>J Clin Microbiol. 1981 Mar;13(3):444-8</RefSource><PMID Version="1">6165736</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 1987 Jul;4(4):406-25</RefSource><PMID Version="1">3447015</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Int J Syst Bacteriol. 1994 Oct;44(4):812-26</RefSource><PMID Version="1">7981107</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000068536" MajorTopicYN="N">Firmicutes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & 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MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016585" MajorTopicYN="N">Vaginosis, Bacterial</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><OtherID Source="NLM">NIHMS651665</OtherID><OtherID Source="NLM">PMC4385425</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacterial vaginosis associated bacterium 3</Keyword><Keyword MajorTopicYN="N">Genital tract</Keyword><Keyword MajorTopicYN="N">Mageeibacillus indolicus gen. nov., sp. nov.</Keyword><Keyword MajorTopicYN="N">Taxonomy</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>09</Month><Day>18</Day></PubMedPubDate><PubMedPubDate 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