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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Draft Genome Sequence of the Probiotic Yeast <italic>Saccharomyces cerevisiae</italic>
 var. <italic>boulardii</italic>
 Strain ATCC MYA-796</title>
<author><name sortKey="Batista, T M" sort="Batista, T M" uniqKey="Batista T" first="T. M." last="Batista">T. M. Batista</name>
<affiliation><nlm:aff id="aff1">Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Marques, E T A" sort="Marques, E T A" uniqKey="Marques E" first="E. T. A." last="Marques">E. T. A. Marques</name>
<affiliation><nlm:aff id="aff3">University of Pittsburgh, Center of Vaccine Research, Pittsburgh, Pennsylvania, USA</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Franco, G R" sort="Franco, G R" uniqKey="Franco G" first="G. R." last="Franco">G. R. Franco</name>
<affiliation><nlm:aff id="aff1">Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Douradinha, B" sort="Douradinha, B" uniqKey="Douradinha B" first="B." last="Douradinha">B. Douradinha</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">25523784</idno>
<idno type="pmc">4271174</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271174</idno>
<idno type="RBID">PMC:4271174</idno>
<idno type="doi">10.1128/genomeA.01345-14</idno>
<date when="2014">2014</date>
<idno type="wicri:Area/Pmc/Corpus">000623</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000623</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Draft Genome Sequence of the Probiotic Yeast <italic>Saccharomyces cerevisiae</italic>
 var. <italic>boulardii</italic>
 Strain ATCC MYA-796</title>
<author><name sortKey="Batista, T M" sort="Batista, T M" uniqKey="Batista T" first="T. M." last="Batista">T. M. Batista</name>
<affiliation><nlm:aff id="aff1">Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Marques, E T A" sort="Marques, E T A" uniqKey="Marques E" first="E. T. A." last="Marques">E. T. A. Marques</name>
<affiliation><nlm:aff id="aff3">University of Pittsburgh, Center of Vaccine Research, Pittsburgh, Pennsylvania, USA</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Franco, G R" sort="Franco, G R" uniqKey="Franco G" first="G. R." last="Franco">G. R. Franco</name>
<affiliation><nlm:aff id="aff1">Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Douradinha, B" sort="Douradinha, B" uniqKey="Douradinha B" first="B." last="Douradinha">B. Douradinha</name>
</author>
</analytic>
<series><title level="j">Genome Announcements</title>
<idno type="eISSN">2169-8287</idno>
<imprint><date when="2014">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p><italic>Saccharomyces boulardii</italic>
 is the only yeast approved as a probiotic for human consumption. Here, we report the draft genome sequence of the strain ATCC MYA-796, derived from the French Ultra Levure probiotic drug. The genome has a size of 11.6 Mb with 5,305 putative open reading frames predicted.</p>
</div>
</front>
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</analytic>
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</div1>
</back>
</TEI>
<pmc article-type="brief-report"><pmc-dir>properties open_access</pmc-dir>
  <front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Announc</journal-id>
<journal-id journal-id-type="iso-abbrev">Genome Announc</journal-id>
<journal-id journal-id-type="hwp">ga</journal-id>
<journal-id journal-id-type="pmc">ga</journal-id>
<journal-id journal-id-type="publisher-id">GA</journal-id>
<journal-title-group><journal-title>Genome Announcements</journal-title>
</journal-title-group>
<issn pub-type="epub">2169-8287</issn>
<publisher><publisher-name>American Society for Microbiology</publisher-name>
<publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">25523784</article-id>
<article-id pub-id-type="pmc">4271174</article-id>
<article-id pub-id-type="publisher-id">genomeA01345-14</article-id>
<article-id pub-id-type="doi">10.1128/genomeA.01345-14</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Eukaryotes</subject>
</subj-group>
</article-categories>
<title-group><article-title>Draft Genome Sequence of the Probiotic Yeast <italic>Saccharomyces cerevisiae</italic>
 var. <italic>boulardii</italic>
 Strain ATCC MYA-796</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" corresp="yes"><name><surname>Batista</surname>
<given-names>T. M.</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>a</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Marques</surname>
<given-names>E. T. A.</given-names>
<suffix>Jr.</suffix>
</name>
<xref ref-type="aff" rid="aff3"><sup>c</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Franco</surname>
<given-names>G. R.</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>a</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Douradinha</surname>
<given-names>B.</given-names>
</name>
<xref ref-type="aff" rid="aff2 aff3"><sup>b,c</sup>
</xref>
</contrib>
<aff id="aff1"><label>a</label>
Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil</aff>
<aff id="aff2"><label>b</label>
Fondazione RiMED, Palermo, Italy</aff>
<aff id="aff3"><label>c</label>
University of Pittsburgh, Center of Vaccine Research, Pittsburgh, Pennsylvania, USA</aff>
</contrib-group>
<author-notes><corresp id="cor1"> Address correspondence to T. M. Batista, <email>thiagomafra@gmail.com</email>
, or B. Douradinha, <email>brd49@pitt.edu</email>
.</corresp>
</author-notes>
<pub-date pub-type="epub"><day>18</day>
<month>12</month>
<year>2014</year>
</pub-date>
<pub-date pub-type="collection"><season>Nov-Dec</season>
<year>2014</year>
</pub-date>
<volume>2</volume>
<issue>6</issue>
<elocation-id>e01345-14</elocation-id>
<history><date date-type="received"><day>12</day>
<month>11</month>
<year>2014</year>
</date>
<date date-type="accepted"><day>14</day>
<month>11</month>
<year>2014</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2014 Batista et al.</copyright-statement>
<copyright-year>2014</copyright-year>
<copyright-holder>Batista et al.</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution 3.0 Unported license</ext-link>
.</license-p>
</license>
</permissions>
<self-uri xlink:title="pdf" xlink:type="simple" xlink:href="jga006141955001.pdf"></self-uri>
<abstract><p><italic>Saccharomyces boulardii</italic>
 is the only yeast approved as a probiotic for human consumption. Here, we report the draft genome sequence of the strain ATCC MYA-796, derived from the French Ultra Levure probiotic drug. The genome has a size of 11.6 Mb with 5,305 putative open reading frames predicted.</p>
</abstract>
<counts><page-count count="2"></page-count>
</counts>
<custom-meta-group><custom-meta><meta-name>cover-date</meta-name>
<meta-value>November/December 2014</meta-value>
</custom-meta>
<custom-meta><meta-name>access-type</meta-name>
<meta-value>free</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body><sec><title>GENOME ANNOUNCEMENT</title>
<p>Isolated by the French scientist Henri Boulard in 1920 during a cholera outbreak, the yeast <italic>Saccharomyces cerevisiae</italic>
 var. <italic>boulardii</italic>
 is still the only eukaryotic microorganism used as a probiotic in human health for the treatment of gastrointestinal disorders (<xref rid="B1" ref-type="bibr">1</xref>
). This probiotic yeast is used worldwide and has been tested for clinical efficacy against several diseases, including traveler’s diarrhea, antibiotic-associated diarrhea (AAD), acute adult diarrhea, HIV-related diarrhea, <italic>Helicobacter pylori</italic>
 diseases, <italic>Clostridium difficile</italic>
 and <italic>Salmonella typhi</italic>
 infections, and Crohn’s disease, among others (<xref rid="B2" ref-type="bibr">2</xref>
). Recently, a work was published describing the genome of an <italic>S. boulardii</italic>
 strain commercialized in India (<xref rid="B3" ref-type="bibr">3</xref>
).</p>
<p>Here, we report the draft genome sequence of <italic>S. cerevisiae</italic>
 var. <italic>boulardii</italic>
 strain ATCC MYA-796, derived from the French Ultra Levure probiotic drug. The genomic DNA was sequenced using Illumina HiSeq by Axeq Technologies (<ext-link ext-link-type="uri" xlink:href="http://www.axeq.com">http://www.axeq.com</ext-link>
). A total of 48.3 million paired-end reads of 101 bp with an estimated 403× coverage were produced. Different k-mer values were tested to obtain the ideal value (k 61). The <italic>de novo</italic>
 assembly was performed using SOAPdenovo version 2.04 (<xref rid="B4" ref-type="bibr">4</xref>
) with parameters -R -u -F -M 2. The contigs were scaffolded using SSPACE (<xref rid="B5" ref-type="bibr">5</xref>
) and ordered by CONTIGuator (<xref rid="B6" ref-type="bibr">6</xref>
) using the <italic>S. cerevisiae</italic>
 S288c genome as a reference; gaps were closed with GapCloser (<xref rid="B4" ref-type="bibr">4</xref>
). The resulting assembly has 193 contigs (>400 bp) with a total length of 11,405,855 bp (the largest contig having a length of 459,679 bp), an <italic>N</italic>
<sub>50</sub>
 of 203 kb (in 19 contigs), and a G+C content of 38.1% and 100% of completeness, as estimated by mapping the orthologous genes (KOG databases) using CEGMA software (<xref rid="B7" ref-type="bibr">7</xref>
). Genome annotation performed by MAKER2 (<xref rid="B8" ref-type="bibr">8</xref>
) revealed 5,305 putative open reading frames (ORFs). An automatic annotation using the BLASTp algorithm (<xref rid="B9" ref-type="bibr">9</xref>
) revealed 5,321 ORFs with significant similarity (<italic>E</italic>
-value cutoff ≤10<sup>−3</sup>
) to sequences deposited in the non-redundant (nr) protein database from NCBI. Using the tRNAscan-SE version 1.3 software (<xref rid="B9" ref-type="bibr">9</xref>
), we found 273 tRNA genes scattered across the contigs.</p>
<p>The draft sequence of the yeast <italic>S. cerevisiae</italic>
 var. <italic>boulardii</italic>
 strain ATCC MYA-796 complements the genetic information of this probiotic yeast already deposited in GenBank.</p>
<sec id="h1"><title>Nucleotide sequence accession numbers.</title>
<p>Data related to the whole-genome shotgun project of <italic>S. cerevisiae</italic>
 var. <italic>boulardii</italic>
 ATCC MYA-796 has been deposited at DDBJ/EMBL/GenBank under the accession number <ext-link ext-link-type="NCBI:nucleotide" xlink:href="JRHY00000000">JRHY00000000</ext-link>
. The version herein described is under accession number JRHY01000000.</p>
</sec>
</sec>
</body>
<back><fn-group><fn fn-type="other"><p><bold>Citation</bold>
 Batista TM, Marques ETA, Jr., Franco GR, Douradinha B. 2014. Draft genome sequence of the probiotic yeast <italic>Saccharomyces cerevisiae</italic>
 var. <italic>boulardii</italic>
 strain ATCC MYA-796. Genome Announc. 2(6):e01345-14. doi:10.1128/genomeA.01345-14.</p>
</fn>
</fn-group>
<ack><title>ACKNOWLEDGMENTS</title>
<p>We thank Flaviano S. Martins from the Universidade Federal de Minas Gerais (Belo Horizonte, Brazil) for helpful discussion and suggestions, and EMBRAPA Informática Agropecuária (Campinas, Brazil) for providing access to genome annotation.</p>
<p>This work was partially funded by Fondazione RiMED (Palermo, Italy).</p>
</ack>
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