Storytelling and story testing in domestication
Identifieur interne : 001C46 ( Ncbi/Merge ); précédent : 001C45; suivant : 001C47Storytelling and story testing in domestication
Auteurs : Pascale Gerbault ; Robin G. Allaby [Royaume-Uni] ; Nicole Boivin [Royaume-Uni] ; Anna Rudzinski ; Ilaria M. Grimaldi [Royaume-Uni] ; J. Chris Pires ; Cynthia Climer Vigueira ; Keith Dobney [Royaume-Uni] ; Kristen J. Gremillion ; Loukas Barton ; Manuel Arroyo-Kalin [Royaume-Uni] ; Michael D. Purugganan [Émirats arabes unis] ; Rafael Rubio De Casas [Espagne] ; Ruth Bollongino [Allemagne] ; Joachim Burger [Allemagne] ; Dorian Q. Fuller [Royaume-Uni] ; Daniel G. Bradley [Irlande (pays)] ; David J. Balding [Royaume-Uni] ; Peter J. Richerson ; M. Thomas P. Gilbert [Danemark] ; Greger Larson [Royaume-Uni] ; Mark G. ThomasSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 2014.
Abstract
Our knowledge of the domestication of animal and plant species comes from a diverse range of disciplines, and interpretation of patterns in data from these disciplines has been the dominant paradigm in domestication research. However, such interpretations are easily steered by subjective biases that typically fail to account for the inherent randomness of evolutionary processes, and which can be blind to emergent patterns in data. The testing of explicit models using computer simulations, and the availability of powerful statistical techniques to fit models to observed data, provide a scientifically robust means of addressing these problems. Here we outline the principles and argue for the merits of such approaches in the context of domestication-related questions.
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DOI: 10.1073/pnas.1400425111
PubMed: 24753572
PubMed Central: 4035932
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Storytelling and story testing in domestication</title><author><name sortKey="Gerbault, Pascale" sort="Gerbault, Pascale" uniqKey="Gerbault P" first="Pascale" last="Gerbault">Pascale Gerbault</name><affiliation><nlm:aff wicri:cut=" and" id="aff1">Research Department of Genetics, Evolution, and Environment</nlm:aff><wicri:noCountry code="subfield">and Environment</wicri:noCountry></affiliation></author><author><name sortKey="Allaby, Robin G" sort="Allaby, Robin G" uniqKey="Allaby R" first="Robin G." last="Allaby">Robin G. Allaby</name><affiliation wicri:level="1"><nlm:aff id="aff3">School of Life Sciences, Gibbet Hill Campus,<institution>University of Warwick</institution>, Coventry CV4 7AL,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Boivin, Nicole" sort="Boivin, Nicole" uniqKey="Boivin N" first="Nicole" last="Boivin">Nicole Boivin</name><affiliation wicri:level="1"><nlm:aff id="aff4">Research Laboratory for Archaeology and the History of Art,<institution>School of Archaeology</institution>, Oxford OX1 3QY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Rudzinski, Anna" sort="Rudzinski, Anna" uniqKey="Rudzinski A" first="Anna" last="Rudzinski">Anna Rudzinski</name><affiliation><nlm:aff wicri:cut=" and" id="aff1">Research Department of Genetics, Evolution, and Environment</nlm:aff><wicri:noCountry code="subfield">and Environment</wicri:noCountry></affiliation></author><author><name sortKey="Grimaldi, Ilaria M" sort="Grimaldi, Ilaria M" uniqKey="Grimaldi I" first="Ilaria M." last="Grimaldi">Ilaria M. Grimaldi</name><affiliation wicri:level="1"><nlm:aff id="aff4">Research Laboratory for Archaeology and the History of Art,<institution>School of Archaeology</institution>, Oxford OX1 3QY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Pires, J Chris" sort="Pires, J Chris" uniqKey="Pires J" first="J. Chris" last="Pires">J. Chris Pires</name><affiliation><nlm:aff id="aff5">Division of Biological Sciences,<institution>University of Missouri</institution>, Columbia,<addr-line>MO</addr-line> 65211;</nlm:aff></affiliation></author><author><name sortKey="Climer Vigueira, Cynthia" sort="Climer Vigueira, Cynthia" uniqKey="Climer Vigueira C" first="Cynthia" last="Climer Vigueira">Cynthia Climer Vigueira</name><affiliation><nlm:aff id="aff6">Department of Biology,<institution>Washington University in St. Louis</institution>, St. Louis,<addr-line>MO</addr-line> 63130;</nlm:aff></affiliation></author><author><name sortKey="Dobney, Keith" sort="Dobney, Keith" uniqKey="Dobney K" first="Keith" last="Dobney">Keith Dobney</name><affiliation wicri:level="1"><nlm:aff id="aff7">Department of Archaeology,<institution>University of Aberdeen</institution>, Aberdeen AB24 3UF,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Gremillion, Kristen J" sort="Gremillion, Kristen J" uniqKey="Gremillion K" first="Kristen J." last="Gremillion">Kristen J. Gremillion</name><affiliation><nlm:aff id="aff8">Department of Anthropology,<institution>Ohio State University</institution>, Columbus,<addr-line>OH</addr-line> 43210;</nlm:aff></affiliation></author><author><name sortKey="Barton, Loukas" sort="Barton, Loukas" uniqKey="Barton L" first="Loukas" last="Barton">Loukas Barton</name><affiliation><nlm:aff id="aff9">Department of Anthropology, Center for Comparative Archaeology,<institution>University of Pittsburgh</institution>, Pittsburgh,<addr-line>PA</addr-line> 15260;</nlm:aff></affiliation></author><author><name sortKey="Arroyo Kalin, Manuel" sort="Arroyo Kalin, Manuel" uniqKey="Arroyo Kalin M" first="Manuel" last="Arroyo-Kalin">Manuel Arroyo-Kalin</name><affiliation wicri:level="1"><nlm:aff id="aff10">Institute of Archaeology,<institution>University College London</institution>, London WC1H 0PY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Purugganan, Michael D" sort="Purugganan, Michael D" uniqKey="Purugganan M" first="Michael D." last="Purugganan">Michael D. Purugganan</name><affiliation><nlm:aff id="aff11">Department of Biology,<institution>New York University</institution>, New York,<addr-line>NY</addr-line> 10003-6688;</nlm:aff></affiliation><affiliation wicri:level="1"><nlm:aff id="aff12">Center for Genomics and Systems Biology,<institution>New York University Abu Dhabi Research Institute</institution>, Abu Dhabi,<country>United Arab Emirates</country>;</nlm:aff><country xml:lang="fr">Émirats arabes unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Rubio De Casas, Rafael" sort="Rubio De Casas, Rafael" uniqKey="Rubio De Casas R" first="Rafael" last="Rubio De Casas">Rafael Rubio De Casas</name><affiliation wicri:level="1"><nlm:aff id="aff13">Departamento de Ecología,<institution>Universidad de Granada</institution>, E-18071 Granada,<country>Spain</country>;</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Bollongino, Ruth" sort="Bollongino, Ruth" uniqKey="Bollongino R" first="Ruth" last="Bollongino">Ruth Bollongino</name><affiliation wicri:level="1"><nlm:aff id="aff14">Institute of Anthropology,<institution>Johannes Gutenberg University</institution>, D-55099 Mainz,<country>Germany</country>;</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Burger, Joachim" sort="Burger, Joachim" uniqKey="Burger J" first="Joachim" last="Burger">Joachim Burger</name><affiliation wicri:level="1"><nlm:aff id="aff14">Institute of Anthropology,<institution>Johannes Gutenberg University</institution>, D-55099 Mainz,<country>Germany</country>;</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Fuller, Dorian Q" sort="Fuller, Dorian Q" uniqKey="Fuller D" first="Dorian Q." last="Fuller">Dorian Q. Fuller</name><affiliation wicri:level="1"><nlm:aff id="aff10">Institute of Archaeology,<institution>University College London</institution>, London WC1H 0PY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Bradley, Daniel G" sort="Bradley, Daniel G" uniqKey="Bradley D" first="Daniel G." last="Bradley">Daniel G. Bradley</name><affiliation wicri:level="1"><nlm:aff id="aff15">Smurfit Institute of Genetics,<institution>Trinity College</institution>, Dublin 2,<country>Ireland</country>;</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Balding, David J" sort="Balding, David J" uniqKey="Balding D" first="David J." last="Balding">David J. Balding</name><affiliation wicri:level="1"><nlm:aff id="aff2">University College London Genetics Institute,<institution>University College London</institution>, London WC1E 6BT,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Richerson, Peter J" sort="Richerson, Peter J" uniqKey="Richerson P" first="Peter J." last="Richerson">Peter J. Richerson</name><affiliation><nlm:aff id="aff16">Department of Environmental Science and Policy,<institution>University of California, Davis</institution>,<addr-line>CA</addr-line> 95616;</nlm:aff></affiliation></author><author><name sortKey="Gilbert, M Thomas P" sort="Gilbert, M Thomas P" uniqKey="Gilbert M" first="M. Thomas P." last="Gilbert">M. Thomas P. Gilbert</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff17">Centre for GeoGenetics, Natural History Museum of Denmark,<institution>University of Copenhagen</institution>, 1350 Copenhagen,<country>Denmark</country></nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Larson, Greger" sort="Larson, Greger" uniqKey="Larson G" first="Greger" last="Larson">Greger Larson</name><affiliation wicri:level="1"><nlm:aff id="aff18">Durham Evolution and Ancient DNA, Department of Archaeology,<institution>Durham University</institution>, Durham DH1 3LE,<country>United Kingdom</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Thomas, Mark G" sort="Thomas, Mark G" uniqKey="Thomas M" first="Mark G." last="Thomas">Mark G. Thomas</name><affiliation><nlm:aff wicri:cut=" and" id="aff1">Research Department of Genetics, Evolution, and Environment</nlm:aff><wicri:noCountry code="subfield">and Environment</wicri:noCountry></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24753572</idno><idno type="pmc">4035932</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4035932</idno><idno type="RBID">PMC:4035932</idno><idno type="doi">10.1073/pnas.1400425111</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000B93</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000B93</idno><idno type="wicri:Area/Pmc/Curation">000B68</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000B68</idno><idno type="wicri:Area/Pmc/Checkpoint">000519</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000519</idno><idno type="wicri:Area/Ncbi/Merge">001C46</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Storytelling and story testing in domestication</title><author><name sortKey="Gerbault, Pascale" sort="Gerbault, Pascale" uniqKey="Gerbault P" first="Pascale" last="Gerbault">Pascale Gerbault</name><affiliation><nlm:aff wicri:cut=" and" id="aff1">Research Department of Genetics, Evolution, and Environment</nlm:aff><wicri:noCountry code="subfield">and Environment</wicri:noCountry></affiliation></author><author><name sortKey="Allaby, Robin G" sort="Allaby, Robin G" uniqKey="Allaby R" first="Robin G." last="Allaby">Robin G. Allaby</name><affiliation wicri:level="1"><nlm:aff id="aff3">School of Life Sciences, Gibbet Hill Campus,<institution>University of Warwick</institution>, Coventry CV4 7AL,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Boivin, Nicole" sort="Boivin, Nicole" uniqKey="Boivin N" first="Nicole" last="Boivin">Nicole Boivin</name><affiliation wicri:level="1"><nlm:aff id="aff4">Research Laboratory for Archaeology and the History of Art,<institution>School of Archaeology</institution>, Oxford OX1 3QY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Rudzinski, Anna" sort="Rudzinski, Anna" uniqKey="Rudzinski A" first="Anna" last="Rudzinski">Anna Rudzinski</name><affiliation><nlm:aff wicri:cut=" and" id="aff1">Research Department of Genetics, Evolution, and Environment</nlm:aff><wicri:noCountry code="subfield">and Environment</wicri:noCountry></affiliation></author><author><name sortKey="Grimaldi, Ilaria M" sort="Grimaldi, Ilaria M" uniqKey="Grimaldi I" first="Ilaria M." last="Grimaldi">Ilaria M. Grimaldi</name><affiliation wicri:level="1"><nlm:aff id="aff4">Research Laboratory for Archaeology and the History of Art,<institution>School of Archaeology</institution>, Oxford OX1 3QY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Pires, J Chris" sort="Pires, J Chris" uniqKey="Pires J" first="J. Chris" last="Pires">J. Chris Pires</name><affiliation><nlm:aff id="aff5">Division of Biological Sciences,<institution>University of Missouri</institution>, Columbia,<addr-line>MO</addr-line> 65211;</nlm:aff></affiliation></author><author><name sortKey="Climer Vigueira, Cynthia" sort="Climer Vigueira, Cynthia" uniqKey="Climer Vigueira C" first="Cynthia" last="Climer Vigueira">Cynthia Climer Vigueira</name><affiliation><nlm:aff id="aff6">Department of Biology,<institution>Washington University in St. Louis</institution>, St. Louis,<addr-line>MO</addr-line> 63130;</nlm:aff></affiliation></author><author><name sortKey="Dobney, Keith" sort="Dobney, Keith" uniqKey="Dobney K" first="Keith" last="Dobney">Keith Dobney</name><affiliation wicri:level="1"><nlm:aff id="aff7">Department of Archaeology,<institution>University of Aberdeen</institution>, Aberdeen AB24 3UF,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Gremillion, Kristen J" sort="Gremillion, Kristen J" uniqKey="Gremillion K" first="Kristen J." last="Gremillion">Kristen J. Gremillion</name><affiliation><nlm:aff id="aff8">Department of Anthropology,<institution>Ohio State University</institution>, Columbus,<addr-line>OH</addr-line> 43210;</nlm:aff></affiliation></author><author><name sortKey="Barton, Loukas" sort="Barton, Loukas" uniqKey="Barton L" first="Loukas" last="Barton">Loukas Barton</name><affiliation><nlm:aff id="aff9">Department of Anthropology, Center for Comparative Archaeology,<institution>University of Pittsburgh</institution>, Pittsburgh,<addr-line>PA</addr-line> 15260;</nlm:aff></affiliation></author><author><name sortKey="Arroyo Kalin, Manuel" sort="Arroyo Kalin, Manuel" uniqKey="Arroyo Kalin M" first="Manuel" last="Arroyo-Kalin">Manuel Arroyo-Kalin</name><affiliation wicri:level="1"><nlm:aff id="aff10">Institute of Archaeology,<institution>University College London</institution>, London WC1H 0PY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Purugganan, Michael D" sort="Purugganan, Michael D" uniqKey="Purugganan M" first="Michael D." last="Purugganan">Michael D. Purugganan</name><affiliation><nlm:aff id="aff11">Department of Biology,<institution>New York University</institution>, New York,<addr-line>NY</addr-line> 10003-6688;</nlm:aff></affiliation><affiliation wicri:level="1"><nlm:aff id="aff12">Center for Genomics and Systems Biology,<institution>New York University Abu Dhabi Research Institute</institution>, Abu Dhabi,<country>United Arab Emirates</country>;</nlm:aff><country xml:lang="fr">Émirats arabes unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Rubio De Casas, Rafael" sort="Rubio De Casas, Rafael" uniqKey="Rubio De Casas R" first="Rafael" last="Rubio De Casas">Rafael Rubio De Casas</name><affiliation wicri:level="1"><nlm:aff id="aff13">Departamento de Ecología,<institution>Universidad de Granada</institution>, E-18071 Granada,<country>Spain</country>;</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Bollongino, Ruth" sort="Bollongino, Ruth" uniqKey="Bollongino R" first="Ruth" last="Bollongino">Ruth Bollongino</name><affiliation wicri:level="1"><nlm:aff id="aff14">Institute of Anthropology,<institution>Johannes Gutenberg University</institution>, D-55099 Mainz,<country>Germany</country>;</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Burger, Joachim" sort="Burger, Joachim" uniqKey="Burger J" first="Joachim" last="Burger">Joachim Burger</name><affiliation wicri:level="1"><nlm:aff id="aff14">Institute of Anthropology,<institution>Johannes Gutenberg University</institution>, D-55099 Mainz,<country>Germany</country>;</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Fuller, Dorian Q" sort="Fuller, Dorian Q" uniqKey="Fuller D" first="Dorian Q." last="Fuller">Dorian Q. Fuller</name><affiliation wicri:level="1"><nlm:aff id="aff10">Institute of Archaeology,<institution>University College London</institution>, London WC1H 0PY,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Bradley, Daniel G" sort="Bradley, Daniel G" uniqKey="Bradley D" first="Daniel G." last="Bradley">Daniel G. Bradley</name><affiliation wicri:level="1"><nlm:aff id="aff15">Smurfit Institute of Genetics,<institution>Trinity College</institution>, Dublin 2,<country>Ireland</country>;</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Balding, David J" sort="Balding, David J" uniqKey="Balding D" first="David J." last="Balding">David J. Balding</name><affiliation wicri:level="1"><nlm:aff id="aff2">University College London Genetics Institute,<institution>University College London</institution>, London WC1E 6BT,<country>United Kingdom</country>;</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Richerson, Peter J" sort="Richerson, Peter J" uniqKey="Richerson P" first="Peter J." last="Richerson">Peter J. Richerson</name><affiliation><nlm:aff id="aff16">Department of Environmental Science and Policy,<institution>University of California, Davis</institution>,<addr-line>CA</addr-line> 95616;</nlm:aff></affiliation></author><author><name sortKey="Gilbert, M Thomas P" sort="Gilbert, M Thomas P" uniqKey="Gilbert M" first="M. Thomas P." last="Gilbert">M. Thomas P. Gilbert</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff17">Centre for GeoGenetics, Natural History Museum of Denmark,<institution>University of Copenhagen</institution>, 1350 Copenhagen,<country>Denmark</country></nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Larson, Greger" sort="Larson, Greger" uniqKey="Larson G" first="Greger" last="Larson">Greger Larson</name><affiliation wicri:level="1"><nlm:aff id="aff18">Durham Evolution and Ancient DNA, Department of Archaeology,<institution>Durham University</institution>, Durham DH1 3LE,<country>United Kingdom</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Thomas, Mark G" sort="Thomas, Mark G" uniqKey="Thomas M" first="Mark G." last="Thomas">Mark G. Thomas</name><affiliation><nlm:aff wicri:cut=" and" id="aff1">Research Department of Genetics, Evolution, and Environment</nlm:aff><wicri:noCountry code="subfield">and Environment</wicri:noCountry></affiliation></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="ISSN">0027-8424</idno><idno type="eISSN">1091-6490</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Significance</title><p>Our knowledge of the domestication of animal and plant species comes from a diverse range of disciplines, and interpretation of patterns in data from these disciplines has been the dominant paradigm in domestication research. However, such interpretations are easily steered by subjective biases that typically fail to account for the inherent randomness of evolutionary processes, and which can be blind to emergent patterns in data. The testing of explicit models using computer simulations, and the availability of powerful statistical techniques to fit models to observed data, provide a scientifically robust means of addressing these problems. Here we outline the principles and argue for the merits of such approaches in the context of domestication-related questions.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Proc Natl Acad Sci U S A</journal-id><journal-id journal-id-type="iso-abbrev">Proc. Natl. Acad. Sci. U.S.A</journal-id><journal-id journal-id-type="hwp">pnas</journal-id><journal-id journal-id-type="pmc">pnas</journal-id><journal-id journal-id-type="publisher-id">PNAS</journal-id><journal-title-group><journal-title>Proceedings of the National Academy of Sciences of the United States of America</journal-title></journal-title-group><issn pub-type="ppub">0027-8424</issn><issn pub-type="epub">1091-6490</issn><publisher><publisher-name>National Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">24753572</article-id><article-id pub-id-type="pmc">4035932</article-id><article-id pub-id-type="publisher-id">201400425</article-id><article-id pub-id-type="doi">10.1073/pnas.1400425111</article-id><article-categories><subj-group subj-group-type="hwp-journal-coll"><subject>114</subject></subj-group><subj-group subj-group-type="heading"><subject>The Modern View of Domestication Special Feature</subject></subj-group><subj-group subj-group-type="heading"><subject>Research Articles</subject></subj-group><subj-group subj-group-type="heading"><subject>Biological Sciences</subject><subj-group><subject>Evolution</subject></subj-group></subj-group></article-categories><title-group><article-title>Storytelling and story testing in domestication</article-title><alt-title alt-title-type="short">Modeling domestication history</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Gerbault</surname><given-names>Pascale</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Allaby</surname><given-names>Robin G.</given-names></name><xref ref-type="aff" rid="aff3"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Boivin</surname><given-names>Nicole</given-names></name><xref ref-type="aff" rid="aff4"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rudzinski</surname><given-names>Anna</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Grimaldi</surname><given-names>Ilaria M.</given-names></name><xref ref-type="aff" rid="aff4"><sup>c</sup></xref></contrib><contrib contrib-type="author"><name><surname>Pires</surname><given-names>J. Chris</given-names></name><xref ref-type="aff" rid="aff5"><sup>d</sup></xref></contrib><contrib contrib-type="author"><name><surname>Climer Vigueira</surname><given-names>Cynthia</given-names></name><xref ref-type="aff" rid="aff6"><sup>e</sup></xref></contrib><contrib contrib-type="author"><name><surname>Dobney</surname><given-names>Keith</given-names></name><xref ref-type="aff" rid="aff7"><sup>f</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gremillion</surname><given-names>Kristen J.</given-names></name><xref ref-type="aff" rid="aff8"><sup>g</sup></xref></contrib><contrib contrib-type="author"><name><surname>Barton</surname><given-names>Loukas</given-names></name><xref ref-type="aff" rid="aff9"><sup>h</sup></xref></contrib><contrib contrib-type="author"><name><surname>Arroyo-Kalin</surname><given-names>Manuel</given-names></name><xref ref-type="aff" rid="aff10"><sup>i</sup></xref></contrib><contrib contrib-type="author"><name><surname>Purugganan</surname><given-names>Michael D.</given-names></name><xref ref-type="aff" rid="aff11"><sup>j</sup></xref><xref ref-type="aff" rid="aff12"><sup>k</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rubio de Casas</surname><given-names>Rafael</given-names></name><xref ref-type="aff" rid="aff13"><sup>l</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bollongino</surname><given-names>Ruth</given-names></name><xref ref-type="aff" rid="aff14"><sup>m</sup></xref></contrib><contrib contrib-type="author"><name><surname>Burger</surname><given-names>Joachim</given-names></name><xref ref-type="aff" rid="aff14"><sup>m</sup></xref></contrib><contrib contrib-type="author"><name><surname>Fuller</surname><given-names>Dorian Q.</given-names></name><xref ref-type="aff" rid="aff10"><sup>i</sup></xref></contrib><contrib contrib-type="author"><name><surname>Bradley</surname><given-names>Daniel G.</given-names></name><xref ref-type="aff" rid="aff15"><sup>n</sup></xref></contrib><contrib contrib-type="author"><name><surname>Balding</surname><given-names>David J.</given-names></name><xref ref-type="aff" rid="aff2"><sup>o</sup></xref></contrib><contrib contrib-type="author"><name><surname>Richerson</surname><given-names>Peter J.</given-names></name><xref ref-type="aff" rid="aff16"><sup>p</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gilbert</surname><given-names>M. Thomas P.</given-names></name><xref ref-type="aff" rid="aff17"><sup>q</sup></xref></contrib><contrib contrib-type="author"><name><surname>Larson</surname><given-names>Greger</given-names></name><xref ref-type="aff" rid="aff18"><sup>r</sup></xref></contrib><contrib contrib-type="author"><name><surname>Thomas</surname><given-names>Mark G.</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref><xref ref-type="corresp" rid="cor1"><sup>1</sup></xref></contrib><aff id="aff1"><sup>a</sup>Research Department of Genetics, Evolution, and Environment and</aff><aff id="aff2"><sup>o</sup>University College London Genetics Institute,<institution>University College London</institution>, London WC1E 6BT,<country>United Kingdom</country>;</aff><aff id="aff3"><sup>b</sup>School of Life Sciences, Gibbet Hill Campus,<institution>University of Warwick</institution>, Coventry CV4 7AL,<country>United Kingdom</country>;</aff><aff id="aff4"><sup>c</sup>Research Laboratory for Archaeology and the History of Art,<institution>School of Archaeology</institution>, Oxford OX1 3QY,<country>United Kingdom</country>;</aff><aff id="aff5"><sup>d</sup>Division of Biological Sciences,<institution>University of Missouri</institution>, Columbia,<addr-line>MO</addr-line> 65211;</aff><aff id="aff6"><sup>e</sup>Department of Biology,<institution>Washington University in St. Louis</institution>, St. Louis,<addr-line>MO</addr-line> 63130;</aff><aff id="aff7"><sup>f</sup>Department of Archaeology,<institution>University of Aberdeen</institution>, Aberdeen AB24 3UF,<country>United Kingdom</country>;</aff><aff id="aff8"><sup>g</sup>Department of Anthropology,<institution>Ohio State University</institution>, Columbus,<addr-line>OH</addr-line> 43210;</aff><aff id="aff9"><sup>h</sup>Department of Anthropology, Center for Comparative Archaeology,<institution>University of Pittsburgh</institution>, Pittsburgh,<addr-line>PA</addr-line> 15260;</aff><aff id="aff10"><sup>i</sup>Institute of Archaeology,<institution>University College London</institution>, London WC1H 0PY,<country>United Kingdom</country>;</aff><aff id="aff11"><sup>j</sup>Department of Biology,<institution>New York University</institution>, New York,<addr-line>NY</addr-line> 10003-6688;</aff><aff id="aff12"><sup>k</sup>Center for Genomics and Systems Biology,<institution>New York University Abu Dhabi Research Institute</institution>, Abu Dhabi,<country>United Arab Emirates</country>;</aff><aff id="aff13"><sup>l</sup>Departamento de Ecología,<institution>Universidad de Granada</institution>, E-18071 Granada,<country>Spain</country>;</aff><aff id="aff14"><sup>m</sup>Institute of Anthropology,<institution>Johannes Gutenberg University</institution>, D-55099 Mainz,<country>Germany</country>;</aff><aff id="aff15"><sup>n</sup>Smurfit Institute of Genetics,<institution>Trinity College</institution>, Dublin 2,<country>Ireland</country>;</aff><aff id="aff16"><sup>p</sup>Department of Environmental Science and Policy,<institution>University of California, Davis</institution>,<addr-line>CA</addr-line> 95616;</aff><aff id="aff17"><sup>q</sup>Centre for GeoGenetics, Natural History Museum of Denmark,<institution>University of Copenhagen</institution>, 1350 Copenhagen,<country>Denmark</country>; and</aff><aff id="aff18"><sup>r</sup>Durham Evolution and Ancient DNA, Department of Archaeology,<institution>Durham University</institution>, Durham DH1 3LE,<country>United Kingdom</country></aff></contrib-group><author-notes><corresp id="cor1"><sup>1</sup>To whom correspondence should be addressed. E-mail: <email>m.thomas@ucl.ac.uk</email>.</corresp><fn fn-type="edited-by"><p>Edited by Andrea Manica, Cambridge University, Cambridge, United Kingdom, and accepted by the Editorial Board March 18, 2014 (received for review January 30, 2014)</p></fn><fn fn-type="con"><p>Author contributions: P.G., R.G.A., P.J.R., M.T.P.G., G.L., and M.G.T. designed research; and P.G., R.G.A., N.B., A.R., I.M.G., J.C.P., C.C.V., K.D., K.J.G., L.B., M.A.-K., M.D.P., R.R.d.C., R.B., J.B., D.Q.F., D.G.B., D.J.B., P.J.R., M.T.P.G., G.L., and M.G.T. wrote the paper.</p></fn></author-notes><pub-date pub-type="ppub"><day>29</day><month>4</month><year>2014</year></pub-date><pub-date pub-type="epub"><day>21</day><month>4</month><year>2014</year></pub-date><pub-date pub-type="pmc-release"><day>21</day><month>4</month><year>2014</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>111</volume><issue>17</issue><fpage>6159</fpage><lpage>6164</lpage><self-uri xlink:title="pdf" xlink:type="simple" xlink:href="pnas.201400425.pdf"></self-uri><abstract abstract-type="executive-summary"><title>Significance</title><p>Our knowledge of the domestication of animal and plant species comes from a diverse range of disciplines, and interpretation of patterns in data from these disciplines has been the dominant paradigm in domestication research. However, such interpretations are easily steered by subjective biases that typically fail to account for the inherent randomness of evolutionary processes, and which can be blind to emergent patterns in data. The testing of explicit models using computer simulations, and the availability of powerful statistical techniques to fit models to observed data, provide a scientifically robust means of addressing these problems. Here we outline the principles and argue for the merits of such approaches in the context of domestication-related questions.</p></abstract><abstract><p>The domestication of plants and animals marks one of the most significant transitions in human, and indeed global, history. Traditionally, study of the domestication process was the exclusive domain of archaeologists and agricultural scientists; today it is an increasingly multidisciplinary enterprise that has come to involve the skills of evolutionary biologists and geneticists. Although the application of new information sources and methodologies has dramatically transformed our ability to study and understand domestication, it has also generated increasingly large and complex datasets, the interpretation of which is not straightforward. In particular, challenges of equifinality, evolutionary variance, and emergence of unexpected or counter-intuitive patterns all face researchers attempting to infer past processes directly from patterns in data. We argue that explicit modeling approaches, drawing upon emerging methodologies in statistics and population genetics, provide a powerful means of addressing these limitations. Modeling also offers an approach to analyzing datasets that avoids conclusions steered by implicit biases, and makes possible the formal integration of different data types. Here we outline some of the modeling approaches most relevant to current problems in domestication research, and demonstrate the ways in which simulation modeling is beginning to reshape our understanding of the domestication process.</p></abstract><kwd-group><kwd>model</kwd><kwd>inference</kwd><kwd>evolution</kwd><kwd>agriculture</kwd><kwd>Neolithic</kwd></kwd-group><counts><page-count count="6"></page-count></counts><custom-meta-group><custom-meta><meta-name>access-type</meta-name><meta-value>free</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>Allemagne</li><li>Danemark</li><li>Espagne</li><li>Irlande (pays)</li><li>Royaume-Uni</li><li>Émirats arabes unis</li></country></list><tree><noCountry><name sortKey="Barton, Loukas" sort="Barton, Loukas" uniqKey="Barton L" first="Loukas" last="Barton">Loukas Barton</name><name sortKey="Climer Vigueira, Cynthia" sort="Climer Vigueira, Cynthia" uniqKey="Climer Vigueira C" first="Cynthia" last="Climer Vigueira">Cynthia Climer Vigueira</name><name sortKey="Gerbault, Pascale" sort="Gerbault, Pascale" uniqKey="Gerbault P" first="Pascale" last="Gerbault">Pascale Gerbault</name><name sortKey="Gremillion, Kristen J" sort="Gremillion, Kristen J" uniqKey="Gremillion K" first="Kristen J." last="Gremillion">Kristen J. Gremillion</name><name sortKey="Pires, J Chris" sort="Pires, J Chris" uniqKey="Pires J" first="J. Chris" last="Pires">J. Chris Pires</name><name sortKey="Richerson, Peter J" sort="Richerson, Peter J" uniqKey="Richerson P" first="Peter J." last="Richerson">Peter J. Richerson</name><name sortKey="Rudzinski, Anna" sort="Rudzinski, Anna" uniqKey="Rudzinski A" first="Anna" last="Rudzinski">Anna Rudzinski</name><name sortKey="Thomas, Mark G" sort="Thomas, Mark G" uniqKey="Thomas M" first="Mark G." last="Thomas">Mark G. Thomas</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Allaby, Robin G" sort="Allaby, Robin G" uniqKey="Allaby R" first="Robin G." last="Allaby">Robin G. Allaby</name></noRegion><name sortKey="Arroyo Kalin, Manuel" sort="Arroyo Kalin, Manuel" uniqKey="Arroyo Kalin M" first="Manuel" last="Arroyo-Kalin">Manuel Arroyo-Kalin</name><name sortKey="Balding, David J" sort="Balding, David J" uniqKey="Balding D" first="David J." last="Balding">David J. Balding</name><name sortKey="Boivin, Nicole" sort="Boivin, Nicole" uniqKey="Boivin N" first="Nicole" last="Boivin">Nicole Boivin</name><name sortKey="Dobney, Keith" sort="Dobney, Keith" uniqKey="Dobney K" first="Keith" last="Dobney">Keith Dobney</name><name sortKey="Fuller, Dorian Q" sort="Fuller, Dorian Q" uniqKey="Fuller D" first="Dorian Q." last="Fuller">Dorian Q. Fuller</name><name sortKey="Grimaldi, Ilaria M" sort="Grimaldi, Ilaria M" uniqKey="Grimaldi I" first="Ilaria M." last="Grimaldi">Ilaria M. Grimaldi</name><name sortKey="Larson, Greger" sort="Larson, Greger" uniqKey="Larson G" first="Greger" last="Larson">Greger Larson</name></country><country name="Émirats arabes unis"><noRegion><name sortKey="Purugganan, Michael D" sort="Purugganan, Michael D" uniqKey="Purugganan M" first="Michael D." last="Purugganan">Michael D. Purugganan</name></noRegion></country><country name="Espagne"><noRegion><name sortKey="Rubio De Casas, Rafael" sort="Rubio De Casas, Rafael" uniqKey="Rubio De Casas R" first="Rafael" last="Rubio De Casas">Rafael Rubio De Casas</name></noRegion></country><country name="Allemagne"><noRegion><name sortKey="Bollongino, Ruth" sort="Bollongino, Ruth" uniqKey="Bollongino R" first="Ruth" last="Bollongino">Ruth Bollongino</name></noRegion><name sortKey="Burger, Joachim" sort="Burger, Joachim" uniqKey="Burger J" first="Joachim" last="Burger">Joachim Burger</name></country><country name="Irlande (pays)"><noRegion><name sortKey="Bradley, Daniel G" sort="Bradley, Daniel G" uniqKey="Bradley D" first="Daniel G." last="Bradley">Daniel G. Bradley</name></noRegion></country><country name="Danemark"><noRegion><name sortKey="Gilbert, M Thomas P" sort="Gilbert, M Thomas P" uniqKey="Gilbert M" first="M. Thomas P." last="Gilbert">M. Thomas P. 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