Gramene 2016: comparative plant genomics and pathway resources.
Identifieur interne : 000339 ( Main/Exploration ); précédent : 000338; suivant : 000340Gramene 2016: comparative plant genomics and pathway resources.
Auteurs : Marcela K. Tello-Ruiz [États-Unis] ; Joshua Stein [États-Unis] ; Sharon Wei [États-Unis] ; Justin Preece [États-Unis] ; Andrew Olson [États-Unis] ; Sushma Naithani [États-Unis] ; Vindhya Amarasinghe [États-Unis] ; Palitha Dharmawardhana [États-Unis] ; Yinping Jiao [États-Unis] ; Joseph Mulvaney [États-Unis] ; Sunita Kumari [États-Unis] ; Kapeel Chougule [États-Unis] ; Justin Elser [États-Unis] ; Bo Wang [États-Unis] ; James Thomason [États-Unis] ; Daniel M. Bolser [Royaume-Uni] ; Arnaud Kerhornou [Royaume-Uni] ; Brandon Walts [Royaume-Uni] ; Nuno A. Fonseca [Royaume-Uni] ; Laura Huerta [Royaume-Uni] ; Maria Keays [Royaume-Uni] ; Y Amy Tang [Royaume-Uni] ; Helen Parkinson [Royaume-Uni] ; Antonio Fabregat [Royaume-Uni] ; Sheldon Mckay [Canada] ; Joel Weiser [Canada] ; Peter D'Eustachio [États-Unis] ; Lincoln Stein [Canada] ; Robert Petryszak [Royaume-Uni] ; Paul J. Kersey [Royaume-Uni] ; Pankaj Jaiswal [États-Unis] ; Doreen Ware [États-Unis]Source :
- Nucleic acids research [ 1362-4962 ] ; 2016.
English descriptors
- KwdEn :
- MESH :
- genetics : Plants.
- metabolism : Plants.
- Databases, Genetic, Gene Expression, Genetic Variation, Genome, Plant, Genomics, Internet, Metabolic Networks and Pathways, Molecular Sequence Annotation.
Abstract
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The genomes section features 39 fully assembled reference genomes that are integrated using ontology-based annotation and comparative analyses, and accessed through both visual and programmatic interfaces. Additional community data, such as genetic variation, expression and methylation, are also mapped for a subset of genomes. The Plant Reactome pathway portal (http://plantreactome.gramene.org) provides a reference resource for analyzing plant metabolic and regulatory pathways. In addition to ∼ 200 curated rice reference pathways, the portal hosts gene homology-based pathway projections for 33 plant species. Both the genome and pathway browsers interface with the EMBL-EBI's Expression Atlas to enable the projection of baseline and differential expression data from curated expression studies in plants. Gramene's archive website (http://archive.gramene.org) continues to provide previously reported resources on comparative maps, markers and QTL. To further aid our users, we have also introduced a live monthly educational webinar series and a Gramene YouTube channel carrying video tutorials.
DOI: 10.1093/nar/gkv1179
PubMed: 26553803
Affiliations:
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Le document en format XML
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Kersey</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Jaiswal, Pankaj" sort="Jaiswal, Pankaj" uniqKey="Jaiswal P" first="Pankaj" last="Jaiswal">Pankaj Jaiswal</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853, USA ware@cshl.edu.</nlm:affiliation><country wicri:rule="url">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA USDA ARS NAA Robert W. 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wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Preece, Justin" sort="Preece, Justin" uniqKey="Preece J" first="Justin" last="Preece">Justin Preece</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Olson, Andrew" sort="Olson, Andrew" uniqKey="Olson A" first="Andrew" last="Olson">Andrew Olson</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Naithani, Sushma" sort="Naithani, Sushma" uniqKey="Naithani S" first="Sushma" last="Naithani">Sushma Naithani</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Amarasinghe, Vindhya" sort="Amarasinghe, Vindhya" uniqKey="Amarasinghe V" first="Vindhya" last="Amarasinghe">Vindhya Amarasinghe</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Dharmawardhana, Palitha" sort="Dharmawardhana, Palitha" uniqKey="Dharmawardhana P" first="Palitha" last="Dharmawardhana">Palitha Dharmawardhana</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Jiao, Yinping" sort="Jiao, Yinping" uniqKey="Jiao Y" first="Yinping" last="Jiao">Yinping Jiao</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Mulvaney, Joseph" sort="Mulvaney, Joseph" uniqKey="Mulvaney J" first="Joseph" last="Mulvaney">Joseph Mulvaney</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Kumari, Sunita" sort="Kumari, Sunita" uniqKey="Kumari S" first="Sunita" last="Kumari">Sunita Kumari</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Chougule, Kapeel" sort="Chougule, Kapeel" uniqKey="Chougule K" first="Kapeel" last="Chougule">Kapeel Chougule</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Elser, Justin" sort="Elser, Justin" uniqKey="Elser J" first="Justin" last="Elser">Justin Elser</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Wang, Bo" sort="Wang, Bo" uniqKey="Wang B" first="Bo" last="Wang">Bo Wang</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Thomason, James" sort="Thomason, James" uniqKey="Thomason J" first="James" last="Thomason">James Thomason</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Bolser, Daniel M" sort="Bolser, Daniel M" uniqKey="Bolser D" first="Daniel M" last="Bolser">Daniel M. Bolser</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Kerhornou, Arnaud" sort="Kerhornou, Arnaud" uniqKey="Kerhornou A" first="Arnaud" last="Kerhornou">Arnaud Kerhornou</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Walts, Brandon" sort="Walts, Brandon" uniqKey="Walts B" first="Brandon" last="Walts">Brandon Walts</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Fonseca, Nuno A" sort="Fonseca, Nuno A" uniqKey="Fonseca N" first="Nuno A" last="Fonseca">Nuno A. Fonseca</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Huerta, Laura" sort="Huerta, Laura" uniqKey="Huerta L" first="Laura" last="Huerta">Laura Huerta</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Keays, Maria" sort="Keays, Maria" uniqKey="Keays M" first="Maria" last="Keays">Maria Keays</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Tang, Y Amy" sort="Tang, Y Amy" uniqKey="Tang Y" first="Y Amy" last="Tang">Y Amy Tang</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Fabregat, Antonio" sort="Fabregat, Antonio" uniqKey="Fabregat A" first="Antonio" last="Fabregat">Antonio Fabregat</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Mckay, Sheldon" sort="Mckay, Sheldon" uniqKey="Mckay S" first="Sheldon" last="Mckay">Sheldon Mckay</name><affiliation wicri:level="1"><nlm:affiliation>Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto, M5G 1L7, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto, M5G 1L7</wicri:regionArea><wicri:noRegion>M5G 1L7</wicri:noRegion></affiliation></author><author><name sortKey="Weiser, Joel" sort="Weiser, Joel" uniqKey="Weiser J" first="Joel" last="Weiser">Joel Weiser</name><affiliation wicri:level="1"><nlm:affiliation>Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto, M5G 1L7, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto, M5G 1L7</wicri:regionArea><wicri:noRegion>M5G 1L7</wicri:noRegion></affiliation></author><author><name sortKey="D Eustachio, Peter" sort="D Eustachio, Peter" uniqKey="D Eustachio P" first="Peter" last="D'Eustachio">Peter D'Eustachio</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biochemistry & Molecular Pharmacology, NYU School of Medicine, New York, NY 10016, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry & Molecular Pharmacology, NYU School of Medicine, New York, NY 10016</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Stein, Lincoln" sort="Stein, Lincoln" uniqKey="Stein L" first="Lincoln" last="Stein">Lincoln Stein</name><affiliation wicri:level="1"><nlm:affiliation>Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto, M5G 1L7, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto, M5G 1L7</wicri:regionArea><wicri:noRegion>M5G 1L7</wicri:noRegion></affiliation></author><author><name sortKey="Petryszak, Robert" sort="Petryszak, Robert" uniqKey="Petryszak R" first="Robert" last="Petryszak">Robert Petryszak</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Kersey, Paul J" sort="Kersey, Paul J" uniqKey="Kersey P" first="Paul J" last="Kersey">Paul J. Kersey</name><affiliation wicri:level="1"><nlm:affiliation>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Jaiswal, Pankaj" sort="Jaiswal, Pankaj" uniqKey="Jaiswal P" first="Pankaj" last="Jaiswal">Pankaj Jaiswal</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name><affiliation wicri:level="2"><nlm:affiliation>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853, USA ware@cshl.edu.</nlm:affiliation><country wicri:rule="url">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author></analytic><series><title level="j">Nucleic acids research</title><idno type="eISSN">1362-4962</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Databases, Genetic</term><term>Gene Expression</term><term>Genetic Variation</term><term>Genome, Plant</term><term>Genomics</term><term>Internet</term><term>Metabolic Networks and Pathways</term><term>Molecular Sequence Annotation</term><term>Plants (genetics)</term><term>Plants (metabolism)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Gene Expression</term><term>Genetic Variation</term><term>Genome, Plant</term><term>Genomics</term><term>Internet</term><term>Metabolic Networks and Pathways</term><term>Molecular Sequence Annotation</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The genomes section features 39 fully assembled reference genomes that are integrated using ontology-based annotation and comparative analyses, and accessed through both visual and programmatic interfaces. Additional community data, such as genetic variation, expression and methylation, are also mapped for a subset of genomes. The Plant Reactome pathway portal (http://plantreactome.gramene.org) provides a reference resource for analyzing plant metabolic and regulatory pathways. In addition to ∼ 200 curated rice reference pathways, the portal hosts gene homology-based pathway projections for 33 plant species. Both the genome and pathway browsers interface with the EMBL-EBI's Expression Atlas to enable the projection of baseline and differential expression data from curated expression studies in plants. Gramene's archive website (http://archive.gramene.org) continues to provide previously reported resources on comparative maps, markers and QTL. To further aid our users, we have also introduced a live monthly educational webinar series and a Gramene YouTube channel carrying video tutorials.</div></front></TEI><affiliations><list><country><li>Canada</li><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Oregon</li><li>État de New York</li></region></list><tree><country name="États-Unis"><region name="État de New York"><name sortKey="Tello Ruiz, Marcela K" sort="Tello Ruiz, Marcela K" uniqKey="Tello Ruiz M" first="Marcela K" last="Tello-Ruiz">Marcela K. Tello-Ruiz</name></region><name sortKey="Amarasinghe, Vindhya" sort="Amarasinghe, Vindhya" uniqKey="Amarasinghe V" first="Vindhya" last="Amarasinghe">Vindhya Amarasinghe</name><name sortKey="Chougule, Kapeel" sort="Chougule, Kapeel" uniqKey="Chougule K" first="Kapeel" last="Chougule">Kapeel Chougule</name><name sortKey="D Eustachio, Peter" sort="D Eustachio, Peter" uniqKey="D Eustachio P" first="Peter" last="D'Eustachio">Peter D'Eustachio</name><name sortKey="Dharmawardhana, Palitha" sort="Dharmawardhana, Palitha" uniqKey="Dharmawardhana P" first="Palitha" last="Dharmawardhana">Palitha Dharmawardhana</name><name sortKey="Elser, Justin" sort="Elser, Justin" uniqKey="Elser J" first="Justin" last="Elser">Justin Elser</name><name sortKey="Jaiswal, Pankaj" sort="Jaiswal, Pankaj" uniqKey="Jaiswal P" first="Pankaj" last="Jaiswal">Pankaj Jaiswal</name><name sortKey="Jiao, Yinping" sort="Jiao, Yinping" uniqKey="Jiao Y" first="Yinping" last="Jiao">Yinping Jiao</name><name sortKey="Kumari, Sunita" sort="Kumari, Sunita" uniqKey="Kumari S" first="Sunita" last="Kumari">Sunita Kumari</name><name sortKey="Mulvaney, Joseph" sort="Mulvaney, Joseph" uniqKey="Mulvaney J" first="Joseph" last="Mulvaney">Joseph Mulvaney</name><name sortKey="Naithani, Sushma" sort="Naithani, Sushma" uniqKey="Naithani S" first="Sushma" last="Naithani">Sushma Naithani</name><name sortKey="Olson, Andrew" sort="Olson, Andrew" uniqKey="Olson A" first="Andrew" last="Olson">Andrew Olson</name><name sortKey="Preece, Justin" sort="Preece, Justin" uniqKey="Preece J" first="Justin" last="Preece">Justin Preece</name><name sortKey="Stein, Joshua" sort="Stein, Joshua" uniqKey="Stein J" first="Joshua" last="Stein">Joshua Stein</name><name sortKey="Thomason, James" sort="Thomason, James" uniqKey="Thomason J" first="James" last="Thomason">James Thomason</name><name sortKey="Wang, Bo" sort="Wang, Bo" uniqKey="Wang B" first="Bo" last="Wang">Bo Wang</name><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name><name sortKey="Wei, Sharon" sort="Wei, Sharon" uniqKey="Wei S" first="Sharon" last="Wei">Sharon Wei</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Bolser, Daniel M" sort="Bolser, Daniel M" uniqKey="Bolser D" first="Daniel M" last="Bolser">Daniel M. Bolser</name></noRegion><name sortKey="Fabregat, Antonio" sort="Fabregat, Antonio" uniqKey="Fabregat A" first="Antonio" last="Fabregat">Antonio Fabregat</name><name sortKey="Fonseca, Nuno A" sort="Fonseca, Nuno A" uniqKey="Fonseca N" first="Nuno A" last="Fonseca">Nuno A. Fonseca</name><name sortKey="Huerta, Laura" sort="Huerta, Laura" uniqKey="Huerta L" first="Laura" last="Huerta">Laura Huerta</name><name sortKey="Keays, Maria" sort="Keays, Maria" uniqKey="Keays M" first="Maria" last="Keays">Maria Keays</name><name sortKey="Kerhornou, Arnaud" sort="Kerhornou, Arnaud" uniqKey="Kerhornou A" first="Arnaud" last="Kerhornou">Arnaud Kerhornou</name><name sortKey="Kersey, Paul J" sort="Kersey, Paul J" uniqKey="Kersey P" first="Paul J" last="Kersey">Paul J. Kersey</name><name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name><name sortKey="Petryszak, Robert" sort="Petryszak, Robert" uniqKey="Petryszak R" first="Robert" last="Petryszak">Robert Petryszak</name><name sortKey="Tang, Y Amy" sort="Tang, Y Amy" uniqKey="Tang Y" first="Y Amy" last="Tang">Y Amy Tang</name><name sortKey="Walts, Brandon" sort="Walts, Brandon" uniqKey="Walts B" first="Brandon" last="Walts">Brandon Walts</name></country><country name="Canada"><noRegion><name sortKey="Mckay, Sheldon" sort="Mckay, Sheldon" uniqKey="Mckay S" first="Sheldon" last="Mckay">Sheldon Mckay</name></noRegion><name sortKey="Stein, Lincoln" sort="Stein, Lincoln" uniqKey="Stein L" first="Lincoln" last="Stein">Lincoln Stein</name><name sortKey="Weiser, Joel" sort="Weiser, Joel" uniqKey="Weiser J" first="Joel" last="Weiser">Joel Weiser</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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