Comparative Genomics of Ten Solanaceous Plastomes
Identifieur interne : 000D83 ( Pmc/Curation ); précédent : 000D82; suivant : 000D84Comparative Genomics of Ten Solanaceous Plastomes
Auteurs : Harpreet Kaur [Inde] ; Bhupinder Pal Singh [Inde] ; Harpreet Singh [Inde] ; Avinash Kaur Nagpal [Inde]Source :
- Advances in Bioinformatics [ 1687-8027 ] ; 2014.
Abstract
Availability of complete plastid genomes of ten solanaceous species,
Url:
DOI: 10.1155/2014/424873
PubMed: 25477958
PubMed Central: 4248371
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative Genomics of Ten Solanaceous Plastomes</title>
<author><name sortKey="Kaur, Harpreet" sort="Kaur, Harpreet" uniqKey="Kaur H" first="Harpreet" last="Kaur">Harpreet Kaur</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, India</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005</wicri:regionArea>
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<author><name sortKey="Singh, Bhupinder Pal" sort="Singh, Bhupinder Pal" uniqKey="Singh B" first="Bhupinder Pal" last="Singh">Bhupinder Pal Singh</name>
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<author><name sortKey="Singh, Harpreet" sort="Singh, Harpreet" uniqKey="Singh H" first="Harpreet" last="Singh">Harpreet Singh</name>
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<author><name sortKey="Nagpal, Avinash Kaur" sort="Nagpal, Avinash Kaur" uniqKey="Nagpal A" first="Avinash Kaur" last="Nagpal">Avinash Kaur Nagpal</name>
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<series><title level="j">Advances in Bioinformatics</title>
<idno type="ISSN">1687-8027</idno>
<idno type="eISSN">1687-8035</idno>
<imprint><date when="2014">2014</date>
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<front><div type="abstract" xml:lang="en"><p>Availability of complete plastid genomes of ten solanaceous species, <italic>Atropa belladonna</italic>
, <italic>Capsicum annuum</italic>
, <italic>Datura stramonium</italic>
, <italic>Nicotiana sylvestris</italic>
, <italic>Nicotiana tabacum</italic>
, <italic>Nicotiana tomentosiformis</italic>
, <italic>Nicotiana undulata</italic>
, <italic>Solanum bulbocastanum</italic>
, <italic>Solanum lycopersicum</italic>
, and <italic>Solanum tuberosum</italic>
provided us with an opportunity to conduct their <italic>in silico</italic>
comparative analysis in depth. The size of complete chloroplast genomes and LSC and SSC regions of three species of <italic>Solanum</italic>
is comparatively smaller than that of any other species studied till date (exception: SSC region of <italic>A. belladonna</italic>
). AT content of coding regions was found to be less than noncoding regions. A duplicate copy of trnH gene in <italic>C. annuum</italic>
and two alternative tRNA genes for proline in <italic>D. stramonium</italic>
were observed for the first time in this analysis. Further, homology search revealed the presence of rps19 pseudogene and infA genes in <italic>A. belladonna</italic>
and <italic>D. stramonium</italic>
, a region identical to rps19 pseudogene in <italic>C. annum</italic>
and orthologues of sprA gene in another six species. Among the eighteen intron-containing genes, 3 genes have two introns and 15 genes have one intron. The longest insertion was found in accD gene in <italic>C. annuum</italic>
. Phylogenetic analysis using concatenated protein coding sequences gave two clades, one for <italic>Nicotiana</italic>
species and another for <italic>Solanum</italic>
, <italic>Capsicum</italic>
, <italic>Atropa</italic>
, and <italic>Datura</italic>
.</p>
</div>
</front>
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</TEI>
<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Adv Bioinformatics</journal-id>
<journal-id journal-id-type="iso-abbrev">Adv Bioinformatics</journal-id>
<journal-id journal-id-type="publisher-id">ABI</journal-id>
<journal-title-group><journal-title>Advances in Bioinformatics</journal-title>
</journal-title-group>
<issn pub-type="ppub">1687-8027</issn>
<issn pub-type="epub">1687-8035</issn>
<publisher><publisher-name>Hindawi Publishing Corporation</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">25477958</article-id>
<article-id pub-id-type="pmc">4248371</article-id>
<article-id pub-id-type="doi">10.1155/2014/424873</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Comparative Genomics of Ten Solanaceous Plastomes</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Kaur</surname>
<given-names>Harpreet</given-names>
</name>
<xref ref-type="aff" rid="I1"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Singh</surname>
<given-names>Bhupinder Pal</given-names>
</name>
<xref ref-type="aff" rid="I1"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Singh</surname>
<given-names>Harpreet</given-names>
</name>
<xref ref-type="aff" rid="I2"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Nagpal</surname>
<given-names>Avinash Kaur</given-names>
</name>
<xref ref-type="aff" rid="I1"><sup>1</sup>
</xref>
<xref ref-type="corresp" rid="cor1"><sup>*</sup>
</xref>
</contrib>
</contrib-group>
<aff id="I1"><sup>1</sup>
Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, India</aff>
<aff id="I2"><sup>2</sup>
Department of Bioinformatics, Hans Raj Mahila Maha Vidyalaya, Jalandhar 144008, India</aff>
<author-notes><corresp id="cor1">*Avinash Kaur Nagpal: <email>avnagpal@yahoo.co.in</email>
</corresp>
<fn fn-type="other"><p>Academic Editor: Paul Harrison</p>
</fn>
</author-notes>
<pub-date pub-type="ppub"><year>2014</year>
</pub-date>
<pub-date pub-type="epub"><day>17</day>
<month>11</month>
<year>2014</year>
</pub-date>
<volume>2014</volume>
<elocation-id>424873</elocation-id>
<history><date date-type="received"><day>26</day>
<month>8</month>
<year>2014</year>
</date>
<date date-type="accepted"><day>14</day>
<month>10</month>
<year>2014</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2014 Harpreet Kaur et al.</copyright-statement>
<copyright-year>2014</copyright-year>
<license license-type="open-access"><license-p>This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<abstract><p>Availability of complete plastid genomes of ten solanaceous species, <italic>Atropa belladonna</italic>
, <italic>Capsicum annuum</italic>
, <italic>Datura stramonium</italic>
, <italic>Nicotiana sylvestris</italic>
, <italic>Nicotiana tabacum</italic>
, <italic>Nicotiana tomentosiformis</italic>
, <italic>Nicotiana undulata</italic>
, <italic>Solanum bulbocastanum</italic>
, <italic>Solanum lycopersicum</italic>
, and <italic>Solanum tuberosum</italic>
provided us with an opportunity to conduct their <italic>in silico</italic>
comparative analysis in depth. The size of complete chloroplast genomes and LSC and SSC regions of three species of <italic>Solanum</italic>
is comparatively smaller than that of any other species studied till date (exception: SSC region of <italic>A. belladonna</italic>
). AT content of coding regions was found to be less than noncoding regions. A duplicate copy of trnH gene in <italic>C. annuum</italic>
and two alternative tRNA genes for proline in <italic>D. stramonium</italic>
were observed for the first time in this analysis. Further, homology search revealed the presence of rps19 pseudogene and infA genes in <italic>A. belladonna</italic>
and <italic>D. stramonium</italic>
, a region identical to rps19 pseudogene in <italic>C. annum</italic>
and orthologues of sprA gene in another six species. Among the eighteen intron-containing genes, 3 genes have two introns and 15 genes have one intron. The longest insertion was found in accD gene in <italic>C. annuum</italic>
. Phylogenetic analysis using concatenated protein coding sequences gave two clades, one for <italic>Nicotiana</italic>
species and another for <italic>Solanum</italic>
, <italic>Capsicum</italic>
, <italic>Atropa</italic>
, and <italic>Datura</italic>
.</p>
</abstract>
</article-meta>
</front>
<floats-group><fig id="fig1" orientation="portrait" position="float"><label>Figure 1</label>
<caption><p>Partial multiple sequence alignment of accD, clpP, ndhA, rpl32, rps16, sprA, tRNA-Ala (UGC), tRNA-Leu(UAA), and ycf1 gene sequences of ten solanaceous species showing location of InDels indicated by hyphens.</p>
</caption>
<graphic xlink:href="ABI2014-424873.001"></graphic>
</fig>
<fig id="fig2" orientation="portrait" position="float"><label>Figure 2</label>
<caption><p>Partial multiple sequence alignment of amino acid sequences of genes, namely, accD, clpP, ndhA, rpl32, rps16, sprA, tRNA-Ala(UGC), tRNA-Leu(UAA), and ycf1, of ten solanaceous species showing location of InDels indicated by hyphens.</p>
</caption>
<graphic xlink:href="ABI2014-424873.002"></graphic>
</fig>
<fig id="fig3" orientation="portrait" position="float"><label>Figure 3</label>
<caption><p>Maximum likelihood phylogenetic tree derived using concatenated nucleotide sequences of 75 protein-coding genes of ten solanaceous species and two outgroup species.</p>
</caption>
<graphic xlink:href="ABI2014-424873.003"></graphic>
</fig>
<table-wrap id="tab1" orientation="portrait" position="float"><label>Table 1</label>
<caption><p>Properties of the solanaceous chloroplast genomes.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="left" rowspan="2" colspan="1">Property</th>
<th align="center" colspan="10" rowspan="1">Name of species</th>
</tr>
<tr><th align="center" rowspan="1" colspan="1">ABE</th>
<th align="center" rowspan="1" colspan="1">CAN</th>
<th align="center" rowspan="1" colspan="1">DST</th>
<th align="center" rowspan="1" colspan="1">NSY</th>
<th align="center" rowspan="1" colspan="1">NTA</th>
<th align="center" rowspan="1" colspan="1">NTO</th>
<th align="center" rowspan="1" colspan="1">NUN</th>
<th align="center" rowspan="1" colspan="1">SBU</th>
<th align="center" rowspan="1" colspan="1">SLY</th>
<th align="center" rowspan="1" colspan="1">STU</th>
</tr>
</thead>
<tbody><tr><td align="left" rowspan="1" colspan="1">Genome size (bp)</td>
<td align="center" rowspan="1" colspan="1">156687</td>
<td align="center" rowspan="1" colspan="1">156781 </td>
<td align="center" rowspan="1" colspan="1">155871</td>
<td align="center" rowspan="1" colspan="1">155941</td>
<td align="center" rowspan="1" colspan="1">155943</td>
<td align="center" rowspan="1" colspan="1">155745</td>
<td align="center" rowspan="1" colspan="1">155863</td>
<td align="center" rowspan="1" colspan="1">155371</td>
<td align="center" rowspan="1" colspan="1">155461</td>
<td align="center" rowspan="1" colspan="1">155296</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">LSC (bp) (coordinates)<sup>*</sup>
</td>
<td align="center" rowspan="1" colspan="1">86,869 (1–86869)</td>
<td align="center" rowspan="1" colspan="1">87366 (1–87366)</td>
<td align="center" rowspan="1" colspan="1">86297 (1–86297)</td>
<td align="center" rowspan="1" colspan="1">86684 (1–86684)</td>
<td align="center" rowspan="1" colspan="1">86,686 (1–86686)</td>
<td align="center" rowspan="1" colspan="1">86392 (1–86392)</td>
<td align="center" rowspan="1" colspan="1">86633 (1–86633)</td>
<td align="center" rowspan="1" colspan="1">85785 (1–85785)</td>
<td align="center" rowspan="1" colspan="1">85,882 (1–85882)</td>
<td align="center" rowspan="1" colspan="1">85737 (1–85737)</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">IR<sub>B</sub>
(bp) (coordinates)<sup>*</sup>
</td>
<td align="center" rowspan="1" colspan="1">25,905 (86870–112774)</td>
<td align="center" rowspan="1" colspan="1">25783 (87367–113149)</td>
<td align="center" rowspan="1" colspan="1">25563 (86298–111860)</td>
<td align="center" rowspan="1" colspan="1">25342 (86685–112026)</td>
<td align="center" rowspan="1" colspan="1">25,343 (86687–112029)</td>
<td align="center" rowspan="1" colspan="1">25429 (86393–111821)</td>
<td align="center" rowspan="1" colspan="1">25331 (86634–111964)</td>
<td align="center" rowspan="1" colspan="1">25588 (85786–111373)</td>
<td align="center" rowspan="1" colspan="1">25,608 (85883–111490)</td>
<td align="center" rowspan="1" colspan="1">25593 (85738–111330)</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">SSC (bp) (coordinates)<sup>*</sup>
</td>
<td align="center" rowspan="1" colspan="1">18,008 (112775–130782)</td>
<td align="center" rowspan="1" colspan="1">17849 (113150–130998)</td>
<td align="center" rowspan="1" colspan="1">18448 (111861–130308)</td>
<td align="center" rowspan="1" colspan="1">18573 (112027–130599)</td>
<td align="center" rowspan="1" colspan="1">18,571 (112030–130600)</td>
<td align="center" rowspan="1" colspan="1">18495 (111822–130316)</td>
<td align="center" rowspan="1" colspan="1">18568 (111965–130532)</td>
<td align="center" rowspan="1" colspan="1">18381 (111374–129754)</td>
<td align="center" rowspan="1" colspan="1">18,363 (111491–129853)</td>
<td align="center" rowspan="1" colspan="1">18373 (111331–129703)</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">IR<sub>A</sub>
(bp) (coordinates)<sup>*</sup>
</td>
<td align="center" rowspan="1" colspan="1">25,905 (130783–156687)</td>
<td align="center" rowspan="1" colspan="1">25783 (130999–156781)</td>
<td align="center" rowspan="1" colspan="1">25563 (130309–155871)</td>
<td align="center" rowspan="1" colspan="1">25342 (130600–155941)</td>
<td align="center" rowspan="1" colspan="1">25,343 (130601–155943)</td>
<td align="center" rowspan="1" colspan="1">25429 (130317–155745)</td>
<td align="center" rowspan="1" colspan="1">25331 (130533–155863)</td>
<td align="center" rowspan="1" colspan="1">25588 (129755–155342)</td>
<td align="center" rowspan="1" colspan="1">25,608 (129854–155461)</td>
<td align="center" rowspan="1" colspan="1">25593 (129704–155296)</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Coding regions (%)</td>
<td align="center" rowspan="1" colspan="1">58.89</td>
<td align="center" rowspan="1" colspan="1">58.50</td>
<td align="center" rowspan="1" colspan="1">59.19</td>
<td align="center" rowspan="1" colspan="1">61.49</td>
<td align="center" rowspan="1" colspan="1">61.12</td>
<td align="center" rowspan="1" colspan="1">61.58</td>
<td align="center" rowspan="1" colspan="1">63.12</td>
<td align="center" rowspan="1" colspan="1">58.52</td>
<td align="center" rowspan="1" colspan="1">58.91</td>
<td align="center" rowspan="1" colspan="1">58.45</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Introns (%)</td>
<td align="center" rowspan="1" colspan="1">12.51</td>
<td align="center" rowspan="1" colspan="1">12.71</td>
<td align="center" rowspan="1" colspan="1">11.62</td>
<td align="center" rowspan="1" colspan="1">12.70</td>
<td align="center" rowspan="1" colspan="1">12.70</td>
<td align="center" rowspan="1" colspan="1">12.68</td>
<td align="center" rowspan="1" colspan="1">12.69</td>
<td align="center" rowspan="1" colspan="1">12.82</td>
<td align="center" rowspan="1" colspan="1">12.47</td>
<td align="center" rowspan="1" colspan="1">12.49</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Intergenic regions (%)</td>
<td align="center" rowspan="1" colspan="1">28.60</td>
<td align="center" rowspan="1" colspan="1">28.79</td>
<td align="center" rowspan="1" colspan="1">29.19</td>
<td align="center" rowspan="1" colspan="1">25.81</td>
<td align="center" rowspan="1" colspan="1">26.18</td>
<td align="center" rowspan="1" colspan="1">25.73</td>
<td align="center" rowspan="1" colspan="1">24.19</td>
<td align="center" rowspan="1" colspan="1">28.66</td>
<td align="center" rowspan="1" colspan="1">28.62</td>
<td align="center" rowspan="1" colspan="1">29.06</td>
</tr>
<tr><td align="center" colspan="11" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="center" colspan="11" rowspan="1">AT content (%)</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Overall</td>
<td align="center" rowspan="1" colspan="1">62.44</td>
<td align="center" rowspan="1" colspan="1">62.27</td>
<td align="center" rowspan="1" colspan="1">62.12</td>
<td align="center" rowspan="1" colspan="1">62.15</td>
<td align="center" rowspan="1" colspan="1">62.15 </td>
<td align="center" rowspan="1" colspan="1">62.21</td>
<td align="center" rowspan="1" colspan="1">62.12</td>
<td align="center" rowspan="1" colspan="1">62.12</td>
<td align="center" rowspan="1" colspan="1">62.14</td>
<td align="center" rowspan="1" colspan="1">62.12</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Coding regions</td>
<td align="center" rowspan="1" colspan="1">59.86</td>
<td align="center" rowspan="1" colspan="1">59.68</td>
<td align="center" rowspan="1" colspan="1">59.65</td>
<td align="center" rowspan="1" colspan="1">59.85</td>
<td align="center" rowspan="1" colspan="1">59.79</td>
<td align="center" rowspan="1" colspan="1">59.79</td>
<td align="center" rowspan="1" colspan="1">59.70</td>
<td align="center" rowspan="1" colspan="1">59.61</td>
<td align="center" rowspan="1" colspan="1">59.65</td>
<td align="center" rowspan="1" colspan="1">59.59</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Noncoding regions</td>
<td align="center" rowspan="1" colspan="1">66.13</td>
<td align="center" rowspan="1" colspan="1">65.93</td>
<td align="center" rowspan="1" colspan="1">65.72</td>
<td align="center" rowspan="1" colspan="1">65.84</td>
<td align="center" rowspan="1" colspan="1">65.87</td>
<td align="center" rowspan="1" colspan="1">66.09</td>
<td align="center" rowspan="1" colspan="1">66.27</td>
<td align="center" rowspan="1" colspan="1">65.66</td>
<td align="center" rowspan="1" colspan="1">65.71</td>
<td align="center" rowspan="1" colspan="1">65.68</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">tRNAs</td>
<td align="center" rowspan="1" colspan="1">47.70</td>
<td align="center" rowspan="1" colspan="1">47.38</td>
<td align="center" rowspan="1" colspan="1">47.08</td>
<td align="center" rowspan="1" colspan="1">47.06</td>
<td align="center" rowspan="1" colspan="1">47.05</td>
<td align="center" rowspan="1" colspan="1">47.10</td>
<td align="center" rowspan="1" colspan="1">47.08</td>
<td align="center" rowspan="1" colspan="1">47.12</td>
<td align="center" rowspan="1" colspan="1">47.01</td>
<td align="center" rowspan="1" colspan="1">47.06</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">rRNAs</td>
<td align="center" rowspan="1" colspan="1">44.64</td>
<td align="center" rowspan="1" colspan="1">44.73</td>
<td align="center" rowspan="1" colspan="1">44.63</td>
<td align="center" rowspan="1" colspan="1">44.64</td>
<td align="center" rowspan="1" colspan="1">44.64</td>
<td align="center" rowspan="1" colspan="1">44.64</td>
<td align="center" rowspan="1" colspan="1">44.64</td>
<td align="center" rowspan="1" colspan="1">44.66</td>
<td align="center" rowspan="1" colspan="1">44.66</td>
<td align="center" rowspan="1" colspan="1">44.65</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">Protein-coding genes</td>
<td align="center" rowspan="1" colspan="1">62.01</td>
<td align="center" rowspan="1" colspan="1">61.83</td>
<td align="center" rowspan="1" colspan="1">61.79</td>
<td align="center" rowspan="1" colspan="1">61.91</td>
<td align="center" rowspan="1" colspan="1">61.86</td>
<td align="center" rowspan="1" colspan="1">61.84</td>
<td align="center" rowspan="1" colspan="1">61.68</td>
<td align="center" rowspan="1" colspan="1">61.76</td>
<td align="center" rowspan="1" colspan="1">61.80</td>
<td align="center" rowspan="1" colspan="1">61.74</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">LSC</td>
<td align="center" rowspan="1" colspan="1">64.37</td>
<td align="center" rowspan="1" colspan="1">64.25</td>
<td align="center" rowspan="1" colspan="1">64.04</td>
<td align="center" rowspan="1" colspan="1">64.05</td>
<td align="center" rowspan="1" colspan="1">64.05</td>
<td align="center" rowspan="1" colspan="1">64.12</td>
<td align="center" rowspan="1" colspan="1">64.01</td>
<td align="center" rowspan="1" colspan="1">63.99</td>
<td align="center" rowspan="1" colspan="1">64.01</td>
<td align="center" rowspan="1" colspan="1">63.99</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">SSC</td>
<td align="center" rowspan="1" colspan="1">68.35</td>
<td align="center" rowspan="1" colspan="1">67.99</td>
<td align="center" rowspan="1" colspan="1">67.72</td>
<td align="center" rowspan="1" colspan="1">67.94</td>
<td align="center" rowspan="1" colspan="1">67.93</td>
<td align="center" rowspan="1" colspan="1">68.03</td>
<td align="center" rowspan="1" colspan="1">67.87</td>
<td align="center" rowspan="1" colspan="1">67.87</td>
<td align="center" rowspan="1" colspan="1">67.97</td>
<td align="center" rowspan="1" colspan="1">67.91</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">IR</td>
<td align="center" rowspan="1" colspan="1">57.14</td>
<td align="center" rowspan="1" colspan="1">56.94</td>
<td align="center" rowspan="1" colspan="1">56.87</td>
<td align="center" rowspan="1" colspan="1">56.78</td>
<td align="center" rowspan="1" colspan="1">56.78</td>
<td align="center" rowspan="1" colspan="1">56.84</td>
<td align="center" rowspan="1" colspan="1">56.78</td>
<td align="center" rowspan="1" colspan="1">56.93</td>
<td align="center" rowspan="1" colspan="1">56.91</td>
<td align="center" rowspan="1" colspan="1">56.90</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn><p>ABE: <italic>Atropa belladonna</italic>
, CAN: <italic>Capsicum annuum</italic>
, DST: <italic>Datura stramonium</italic>
, NSY: <italic>Nicotiana sylvestris</italic>
, NTA: <italic>Nicotiana tabacum</italic>
, NTO: <italic>Nicotiana tomentosiformis</italic>
, NUN: <italic>Nicotiana undulata</italic>
, SBU: <italic>Solanum bulbocastanum</italic>
, SLY: <italic>Solanum lycopersicum</italic>
, STU: <italic>Solanum tuberosum</italic>
, LSC: large single copy region, SSC: small single copy region, and IR: inverted repeat region.</p>
</fn>
<fn><p><sup>*</sup>
Start and end position of nucleotide in the genome. </p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tab2" orientation="portrait" position="float"><label>Table 2</label>
<caption><p>The lengths of introns and exons for the split genes of ten solanaceous species.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="left" rowspan="1" colspan="1">Gene (region)</th>
<th align="center" rowspan="1" colspan="1">Exon/intron</th>
<th align="center" rowspan="1" colspan="1">ABE</th>
<th align="center" rowspan="1" colspan="1">CAN</th>
<th align="center" rowspan="1" colspan="1">DST</th>
<th align="center" rowspan="1" colspan="1">NSY</th>
<th align="center" rowspan="1" colspan="1">NTA</th>
<th align="center" rowspan="1" colspan="1">NTO</th>
<th align="center" rowspan="1" colspan="1">NUN</th>
<th align="center" rowspan="1" colspan="1">SBU</th>
<th align="center" rowspan="1" colspan="1">SLY</th>
<th align="center" rowspan="1" colspan="1">STU</th>
</tr>
</thead>
<tbody><tr><td align="left" rowspan="3" colspan="1">trnK-UUU (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">2519</td>
<td align="center" rowspan="1" colspan="1">2500</td>
<td align="center" rowspan="1" colspan="1">2506</td>
<td align="center" rowspan="1" colspan="1">2526</td>
<td align="center" rowspan="1" colspan="1">2526</td>
<td align="center" rowspan="1" colspan="1">2526</td>
<td align="center" rowspan="1" colspan="1">2521</td>
<td align="center" rowspan="1" colspan="1">2501</td>
<td align="center" rowspan="1" colspan="1">2514</td>
<td align="center" rowspan="1" colspan="1">2512</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">36</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">rps16 (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
<td align="center" rowspan="1" colspan="1">40</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">822</td>
<td align="center" rowspan="1" colspan="1">865</td>
<td align="center" rowspan="1" colspan="1">866</td>
<td align="center" rowspan="1" colspan="1">860</td>
<td align="center" rowspan="1" colspan="1">860</td>
<td align="center" rowspan="1" colspan="1">860</td>
<td align="center" rowspan="1" colspan="1">859</td>
<td align="center" rowspan="1" colspan="1">855</td>
<td align="center" rowspan="1" colspan="1">864</td>
<td align="center" rowspan="1" colspan="1">855</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">227</td>
<td align="center" rowspan="1" colspan="1">227</td>
<td align="center" rowspan="1" colspan="1">227</td>
<td align="center" rowspan="1" colspan="1">218</td>
<td align="center" rowspan="1" colspan="1">218</td>
<td align="center" rowspan="1" colspan="1">218</td>
<td align="center" rowspan="1" colspan="1">218</td>
<td align="center" rowspan="1" colspan="1">227</td>
<td align="center" rowspan="1" colspan="1">227</td>
<td align="center" rowspan="1" colspan="1">227</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">trnG-UCC (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
<td align="center" rowspan="1" colspan="1">23</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">692</td>
<td align="center" rowspan="1" colspan="1">692</td>
<td align="center" rowspan="1" colspan="1">694</td>
<td align="center" rowspan="1" colspan="1">692</td>
<td align="center" rowspan="1" colspan="1">692</td>
<td align="center" rowspan="1" colspan="1">690</td>
<td align="center" rowspan="1" colspan="1">691</td>
<td align="center" rowspan="1" colspan="1">701</td>
<td align="center" rowspan="1" colspan="1">695</td>
<td align="center" rowspan="1" colspan="1">692</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">48</td>
<td align="center" rowspan="1" colspan="1">48</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">atpF (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">145</td>
<td align="center" rowspan="1" colspan="1">144</td>
<td align="center" rowspan="1" colspan="1">144</td>
<td align="center" rowspan="1" colspan="1">145</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">715</td>
<td align="center" rowspan="1" colspan="1">693</td>
<td align="center" rowspan="1" colspan="1">700</td>
<td align="center" rowspan="1" colspan="1">695</td>
<td align="center" rowspan="1" colspan="1">695</td>
<td align="center" rowspan="1" colspan="1">692</td>
<td align="center" rowspan="1" colspan="1">692</td>
<td align="center" rowspan="1" colspan="1">693</td>
<td align="center" rowspan="1" colspan="1">686</td>
<td align="center" rowspan="1" colspan="1">693</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">410</td>
<td align="center" rowspan="1" colspan="1">411</td>
<td align="center" rowspan="1" colspan="1">411</td>
<td align="center" rowspan="1" colspan="1">410</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">rpoC1 (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">432</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">432</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">453</td>
<td align="center" rowspan="1" colspan="1">453</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">737</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">737</td>
<td align="center" rowspan="1" colspan="1">737</td>
<td align="center" rowspan="1" colspan="1">737</td>
<td align="center" rowspan="1" colspan="1">709</td>
<td align="center" rowspan="1" colspan="1">733</td>
<td align="center" rowspan="1" colspan="1">737</td>
<td align="center" rowspan="1" colspan="1">737</td>
<td align="center" rowspan="1" colspan="1">737</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1623</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
<td align="center" rowspan="1" colspan="1">1614</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="5" colspan="1">ycf3 (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
<td align="center" rowspan="1" colspan="1">124</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">739</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">740</td>
<td align="center" rowspan="1" colspan="1">739</td>
<td align="center" rowspan="1" colspan="1">738</td>
<td align="center" rowspan="1" colspan="1">731</td>
<td align="center" rowspan="1" colspan="1">735</td>
<td align="center" rowspan="1" colspan="1">730</td>
<td align="center" rowspan="1" colspan="1">729</td>
<td align="center" rowspan="1" colspan="1">727</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
<td align="center" rowspan="1" colspan="1">230</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron II</td>
<td align="center" rowspan="1" colspan="1">763</td>
<td align="center" rowspan="1" colspan="1">744</td>
<td align="center" rowspan="1" colspan="1">753</td>
<td align="center" rowspan="1" colspan="1">783</td>
<td align="center" rowspan="1" colspan="1">783</td>
<td align="center" rowspan="1" colspan="1">779</td>
<td align="center" rowspan="1" colspan="1">781</td>
<td align="center" rowspan="1" colspan="1">750</td>
<td align="center" rowspan="1" colspan="1">750</td>
<td align="center" rowspan="1" colspan="1">750</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon III</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">159</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
<td align="center" rowspan="1" colspan="1">153</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">trnL-UAA (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">497</td>
<td align="center" rowspan="1" colspan="1">426</td>
<td align="center" rowspan="1" colspan="1">501</td>
<td align="center" rowspan="1" colspan="1">503</td>
<td align="center" rowspan="1" colspan="1">503</td>
<td align="center" rowspan="1" colspan="1">497</td>
<td align="center" rowspan="1" colspan="1">498</td>
<td align="center" rowspan="1" colspan="1">502</td>
<td align="center" rowspan="1" colspan="1">497</td>
<td align="center" rowspan="1" colspan="1">497</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
<td align="center" rowspan="1" colspan="1">50</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">trnV-UAC (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">572</td>
<td align="center" rowspan="1" colspan="1">575</td>
<td align="center" rowspan="1" colspan="1">569</td>
<td align="center" rowspan="1" colspan="1">571</td>
<td align="center" rowspan="1" colspan="1">571</td>
<td align="center" rowspan="1" colspan="1">572</td>
<td align="center" rowspan="1" colspan="1">573</td>
<td align="center" rowspan="1" colspan="1">569</td>
<td align="center" rowspan="1" colspan="1">571</td>
<td align="center" rowspan="1" colspan="1">571</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="5" colspan="1">rps12<sup>*</sup>
</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
<td align="center" rowspan="1" colspan="1">114</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
<td align="center" rowspan="1" colspan="1">—</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
<td align="center" rowspan="1" colspan="1">232</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron II</td>
<td align="center" rowspan="1" colspan="1">535</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
<td align="center" rowspan="1" colspan="1">536</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon III</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
<td align="center" rowspan="1" colspan="1">26</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="5" colspan="1">clpP (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
<td align="center" rowspan="1" colspan="1">71</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">799</td>
<td align="center" rowspan="1" colspan="1">811</td>
<td align="center" rowspan="1" colspan="1">792</td>
<td align="center" rowspan="1" colspan="1">807</td>
<td align="center" rowspan="1" colspan="1">807</td>
<td align="center" rowspan="1" colspan="1">789</td>
<td align="center" rowspan="1" colspan="1">789</td>
<td align="center" rowspan="1" colspan="1">789</td>
<td align="center" rowspan="1" colspan="1">798</td>
<td align="center" rowspan="1" colspan="1">789</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
<td align="center" rowspan="1" colspan="1">292</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron II</td>
<td align="center" rowspan="1" colspan="1">622</td>
<td align="center" rowspan="1" colspan="1">626</td>
<td align="center" rowspan="1" colspan="1">624</td>
<td align="center" rowspan="1" colspan="1">637</td>
<td align="center" rowspan="1" colspan="1">637</td>
<td align="center" rowspan="1" colspan="1">634</td>
<td align="center" rowspan="1" colspan="1">631</td>
<td align="center" rowspan="1" colspan="1">625</td>
<td align="center" rowspan="1" colspan="1">617</td>
<td align="center" rowspan="1" colspan="1">620</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon III</td>
<td align="center" rowspan="1" colspan="1">228</td>
<td align="center" rowspan="1" colspan="1">228</td>
<td align="center" rowspan="1" colspan="1">234</td>
<td align="center" rowspan="1" colspan="1">228</td>
<td align="center" rowspan="1" colspan="1">228</td>
<td align="center" rowspan="1" colspan="1">228</td>
<td align="center" rowspan="1" colspan="1">228</td>
<td align="center" rowspan="1" colspan="1">234</td>
<td align="center" rowspan="1" colspan="1">258</td>
<td align="center" rowspan="1" colspan="1">234</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">petB (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">6</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">759</td>
<td align="center" rowspan="1" colspan="1">755</td>
<td align="center" rowspan="1" colspan="1">746</td>
<td align="center" rowspan="1" colspan="1">753</td>
<td align="center" rowspan="1" colspan="1">753</td>
<td align="center" rowspan="1" colspan="1">753</td>
<td align="center" rowspan="1" colspan="1">753</td>
<td align="center" rowspan="1" colspan="1">747</td>
<td align="center" rowspan="1" colspan="1">747</td>
<td align="center" rowspan="1" colspan="1">747</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
<td align="center" rowspan="1" colspan="1">642</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">petD (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">8</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">748</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">742</td>
<td align="center" rowspan="1" colspan="1">739</td>
<td align="center" rowspan="1" colspan="1">738</td>
<td align="center" rowspan="1" colspan="1">739</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">474</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">477</td>
<td align="center" rowspan="1" colspan="1">475</td>
<td align="center" rowspan="1" colspan="1">475</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">rpl16 (LSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">9</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">1019</td>
<td align="center" rowspan="1" colspan="1">1026</td>
<td align="center" rowspan="1" colspan="1">1025</td>
<td align="center" rowspan="1" colspan="1">1020</td>
<td align="center" rowspan="1" colspan="1">1020</td>
<td align="center" rowspan="1" colspan="1">1021</td>
<td align="center" rowspan="1" colspan="1">1020</td>
<td align="center" rowspan="1" colspan="1">1014</td>
<td align="center" rowspan="1" colspan="1">1018</td>
<td align="center" rowspan="1" colspan="1">1014</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
<td align="center" rowspan="1" colspan="1">396</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">rpl2 (IR)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">393</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">390</td>
<td align="center" rowspan="1" colspan="1">391</td>
<td align="center" rowspan="1" colspan="1">391</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">664</td>
<td align="center" rowspan="1" colspan="1">665</td>
<td align="center" rowspan="1" colspan="1">669</td>
<td align="center" rowspan="1" colspan="1">666</td>
<td align="center" rowspan="1" colspan="1">666</td>
<td align="center" rowspan="1" colspan="1">666</td>
<td align="center" rowspan="1" colspan="1">666</td>
<td align="center" rowspan="1" colspan="1">666</td>
<td align="center" rowspan="1" colspan="1">666</td>
<td align="center" rowspan="1" colspan="1">666</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">429</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">435</td>
<td align="center" rowspan="1" colspan="1">434</td>
<td align="center" rowspan="1" colspan="1">434</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">ndhB (IR)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
<td align="center" rowspan="1" colspan="1">777</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
<td align="center" rowspan="1" colspan="1">679</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
<td align="center" rowspan="1" colspan="1">756</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">trnI-GAU (IR)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">42</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">42</td>
<td align="center" rowspan="1" colspan="1">37</td>
<td align="center" rowspan="1" colspan="1">37</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">717</td>
<td align="center" rowspan="1" colspan="1">722</td>
<td align="center" rowspan="1" colspan="1">717</td>
<td align="center" rowspan="1" colspan="1">707</td>
<td align="center" rowspan="1" colspan="1">707</td>
<td align="center" rowspan="1" colspan="1">716</td>
<td align="center" rowspan="1" colspan="1">716</td>
<td align="center" rowspan="1" colspan="1">717</td>
<td align="center" rowspan="1" colspan="1">722</td>
<td align="center" rowspan="1" colspan="1">722</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">34</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">trnA-UGC (IR)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
<td align="center" rowspan="1" colspan="1">38</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">681</td>
<td align="center" rowspan="1" colspan="1">811</td>
<td align="center" rowspan="1" colspan="1">811</td>
<td align="center" rowspan="1" colspan="1">709</td>
<td align="center" rowspan="1" colspan="1">709</td>
<td align="center" rowspan="1" colspan="1">709</td>
<td align="center" rowspan="1" colspan="1">709</td>
<td align="center" rowspan="1" colspan="1">811</td>
<td align="center" rowspan="1" colspan="1">811</td>
<td align="center" rowspan="1" colspan="1">811</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
<td align="center" rowspan="1" colspan="1">35</td>
</tr>
<tr><td align="center" colspan="12" rowspan="1"><hr></hr>
</td>
</tr>
<tr><td align="left" rowspan="3" colspan="1">ndhA (SSC)</td>
<td align="center" rowspan="1" colspan="1">Exon I</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">552</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">552</td>
<td align="center" rowspan="1" colspan="1">553</td>
<td align="center" rowspan="1" colspan="1">553</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Intron I</td>
<td align="center" rowspan="1" colspan="1">1150</td>
<td align="center" rowspan="1" colspan="1">1157</td>
<td align="center" rowspan="1" colspan="1">1154</td>
<td align="center" rowspan="1" colspan="1">1148</td>
<td align="center" rowspan="1" colspan="1">1148</td>
<td align="center" rowspan="1" colspan="1">1149</td>
<td align="center" rowspan="1" colspan="1">1148</td>
<td align="center" rowspan="1" colspan="1">1158</td>
<td align="center" rowspan="1" colspan="1">1133</td>
<td align="center" rowspan="1" colspan="1">1158</td>
</tr>
<tr><td align="center" rowspan="1" colspan="1">Exon II</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">537</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">540</td>
<td align="center" rowspan="1" colspan="1">539</td>
<td align="center" rowspan="1" colspan="1">539</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn><p><sup>*</sup>
rps12 gene is dividing gene. The 3′-rps12 locates on the IR-region, while the 5′-rps12 locates on the LSC region.</p>
</fn>
<fn><p>ABE: <italic>Atropa belladonna</italic>
, CAN: <italic>Capsicum annuum</italic>
, DST: <italic>Datura stramonium</italic>
, NSY: <italic>Nicotiana sylvestris</italic>
, NTA: <italic>Nicotiana tabacum</italic>
, NTO: <italic>Nicotiana tomentosiformis</italic>
, NUN: <italic>Nicotiana undulata</italic>
, SBU: <italic>Solanum bulbocastanum</italic>
, SLY: <italic>Solanum lycopersicum</italic>
, and STU: <italic>Solanum tuberosum. </italic>
</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tab3" orientation="portrait" position="float"><label>Table 3</label>
<caption><p>InDels in nucleotide sequences of 9 genes of ten solanaceous plastid genomes.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="left" rowspan="1" colspan="1">S. number</th>
<th align="center" rowspan="1" colspan="1">Gene<sup>abc</sup>
</th>
<th align="center" rowspan="1" colspan="1">Total number of InDels</th>
<th align="left" rowspan="1" colspan="1">InDel length (bp)</th>
</tr>
</thead>
<tbody><tr><td align="left" rowspan="1" colspan="1">1</td>
<td align="center" rowspan="1" colspan="1">accD<sup>a</sup>
</td>
<td align="center" rowspan="1" colspan="1">4</td>
<td align="left" rowspan="1" colspan="1">24, 9, 141, 6</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">2</td>
<td align="center" rowspan="1" colspan="1">clpP<sup>a</sup>
</td>
<td align="center" rowspan="1" colspan="1">24</td>
<td align="left" rowspan="1" colspan="1">8(I), 14(I), 13(I), 7(I), 1(I), 2-3(I), 7(I), 1–7(I), 3(I), 2(I), 3(I), 1–7(I), 1–3(I), 1(I), 1(I), 1(I), 1–5(I), 4–7(I), 1(I), 9(I), 1-2(I), 3(I), 5(I), 24–30</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">3</td>
<td align="center" rowspan="1" colspan="1">ndhA<sup>b</sup>
</td>
<td align="center" rowspan="1" colspan="1">14</td>
<td align="left" rowspan="1" colspan="1">9(I), 5-6(I), 3(I), 1(I), 9(I), 3(I), 4(I), 1–4(I), 1-2(I), 1–23(I), 1-2(I), 2(I), 1(I), 3(I)</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">4</td>
<td align="center" rowspan="1" colspan="1">rpl32<sup>b</sup>
</td>
<td align="center" rowspan="1" colspan="1">2</td>
<td align="left" rowspan="1" colspan="1"> 2-3, 4</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">5</td>
<td align="center" rowspan="1" colspan="1">rps16<sup>a</sup>
</td>
<td align="center" rowspan="1" colspan="1">11</td>
<td align="left" rowspan="1" colspan="1">1–38, 9(I), 1(I), 1(I), 5(I), 1-2(I), 5(I), 4(I), 6(I), 1(I), 9</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">6</td>
<td align="center" rowspan="1" colspan="1">sprA<sup>b</sup>
</td>
<td align="center" rowspan="1" colspan="1">2</td>
<td align="left" rowspan="1" colspan="1">109, 7</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">7</td>
<td align="center" rowspan="1" colspan="1">trnA-UGC<sup>c</sup>
</td>
<td align="center" rowspan="1" colspan="1">1</td>
<td align="left" rowspan="1" colspan="1">102–130</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">8</td>
<td align="center" rowspan="1" colspan="1">trnL-UAA<sup>a</sup>
</td>
<td align="center" rowspan="1" colspan="1">4</td>
<td align="left" rowspan="1" colspan="1">1, 6, 71, 4</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">9</td>
<td align="center" rowspan="1" colspan="1">ycf1<sup>b</sup>
</td>
<td align="center" rowspan="1" colspan="1">31</td>
<td align="left" rowspan="1" colspan="1">3, 18, 18, 21, 6, 6, 48, 9, 6, 6, 42, 3, 6, 30, 3, 15, 12–39, 18, 6, 9–36, 6, 6, 6, 9, 9, 12, 6, 6, 6, 57, 6</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn><p><sup>abc</sup>
Location in different regions; <sup>a</sup>
LSC, <sup>b</sup>
SSC, and <sup>c</sup>
IR; I: InDels present in introns.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tab4" orientation="portrait" position="float"><label>Table 4</label>
<caption><p>InDels in amino acid sequences of 5 proteins of ten solanaceous plastid genomes.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="left" rowspan="1" colspan="1">S. number</th>
<th align="center" rowspan="1" colspan="1">Protein</th>
<th align="center" rowspan="1" colspan="1">Total number of InDels</th>
<th align="left" rowspan="1" colspan="1">InDel length (bp)</th>
</tr>
</thead>
<tbody><tr><td align="left" rowspan="1" colspan="1">1</td>
<td align="center" rowspan="1" colspan="1">accD</td>
<td align="center" rowspan="1" colspan="1">4</td>
<td align="left" rowspan="1" colspan="1">8, 3, 47, 2</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">2</td>
<td align="center" rowspan="1" colspan="1">clpP</td>
<td align="center" rowspan="1" colspan="1">2</td>
<td align="left" rowspan="1" colspan="1">2, 10</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">3</td>
<td align="center" rowspan="1" colspan="1">rpl32 </td>
<td align="center" rowspan="1" colspan="1">1</td>
<td align="left" rowspan="1" colspan="1">1-2</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">4</td>
<td align="center" rowspan="1" colspan="1">rps16</td>
<td align="center" rowspan="1" colspan="1">1</td>
<td align="left" rowspan="1" colspan="1">3</td>
</tr>
<tr><td align="left" rowspan="1" colspan="1">5</td>
<td align="center" rowspan="1" colspan="1">ycf1</td>
<td align="center" rowspan="1" colspan="1">29</td>
<td align="left" rowspan="1" colspan="1">1, 6, 6, 7, 2, 2, 7, 3, 2, 2, 14, 1–10, 1, 5, 4–13, 6, 2, 3–12, 2, 2, 2, 3, 3, 4, 2, 2, 2, 19, 2</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
</record>
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