Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves
Identifieur interne : 000076 ( Pmc/Curation ); précédent : 000075; suivant : 000077Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves
Auteurs : Yi-Bin Lu [République populaire de Chine] ; Yi-Ping Qi [République populaire de Chine] ; Lin-Tong Yang [République populaire de Chine] ; Jinwook Lee [Corée du Sud] ; Peng Guo [République populaire de Chine] ; Xin Ye [République populaire de Chine] ; Meng-Yang Jia [République populaire de Chine] ; Mei-Li Li [République populaire de Chine] ; Li-Song Chen [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Seedlings of
Url:
DOI: 10.3389/fpls.2015.00585
PubMed: 26284101
PubMed Central: 4517394
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Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Institute of Materia Medica, Fujian Academy of Medical Sciences</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation 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first="Mei-Li" last="Li">Mei-Li Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, 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type="wicri:Area/Pmc/Curation">000076</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between <italic>Citrus sinensis</italic> roots and leaves</title><author><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Institute of Materia Medica, Fujian Academy of Medical Sciences</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lee, Jinwook" sort="Lee, Jinwook" uniqKey="Lee J" first="Jinwook" last="Lee">Jinwook Lee</name><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Department of Horticultural Science, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ye, Xin" sort="Ye, Xin" uniqKey="Ye X" first="Xin" last="Ye">Xin Ye</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Jia, Meng Yang" sort="Jia, Meng Yang" uniqKey="Jia M" first="Meng-Yang" last="Jia">Meng-Yang Jia</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Mei Li" sort="Li, Mei Li" uniqKey="Li M" first="Mei-Li" last="Li">Mei-Li Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><institution>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Seedlings of <italic>Citrus sinensis</italic> (L.) Osbeck were supplied with boron (B)-deficient (without H<sub>3</sub>BO<sub>3</sub>) or -sufficient (10 μM H<sub>3</sub>BO<sub>3</sub>) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of <italic>C. sinensis</italic> roots and leaves to B-deficiency at the transcriptional level.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aleza, P" uniqKey="Aleza P">P. Aleza</name></author><author><name sortKey="Juarez, J" uniqKey="Juarez J">J. Juárez</name></author><author><name sortKey="Ollitrault, P" uniqKey="Ollitrault P">P. Ollitrault</name></author><author><name sortKey="Navarro, L" uniqKey="Navarro L">L. 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Peng</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Plant Sci</journal-id><journal-id journal-id-type="iso-abbrev">Front Plant Sci</journal-id><journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id><journal-title-group><journal-title>Frontiers in Plant Science</journal-title></journal-title-group><issn pub-type="epub">1664-462X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26284101</article-id><article-id pub-id-type="pmc">4517394</article-id><article-id pub-id-type="doi">10.3389/fpls.2015.00585</article-id><article-categories><subj-group subj-group-type="heading"><subject>Plant Science</subject><subj-group><subject>Original Research</subject></subj-group></subj-group></article-categories><title-group><article-title>Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between <italic>Citrus sinensis</italic> roots and leaves</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Lu</surname><given-names>Yi-Bin</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/257027/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Qi</surname><given-names>Yi-Ping</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Yang</surname><given-names>Lin-Tong</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lee</surname><given-names>Jinwook</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/257019/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Guo</surname><given-names>Peng</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/256316/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Ye</surname><given-names>Xin</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/257288/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Jia</surname><given-names>Meng-Yang</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Mei-Li</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Chen</surname><given-names>Li-Song</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref><xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/229328/overview"></uri></contrib></contrib-group><aff id="aff1"><sup>1</sup><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff2"><sup>2</sup><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff3"><sup>3</sup><institution>Institute of Materia Medica, Fujian Academy of Medical Sciences</institution><country>Fuzhou, China</country></aff><aff id="aff4"><sup>4</sup><institution>Department of Horticultural Science, Kyungpook National University</institution><country>Daegu, South Korea</country></aff><aff id="aff5"><sup>5</sup><institution>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: Maria Carlota Vaz Patto, Instituto de Tecnologia Quimica e Biologica/Universidade Nova de Lisboa, Portugal</p></fn><fn fn-type="edited-by"><p>Reviewed by: Pedro Martinez-Gomez, Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, Spain; Agustín González-Fontes, Universidad Pablo de Olavide, Sevilla, Spain</p></fn><corresp id="fn001">*Correspondence: Li-Song Chen, Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Boxue Building, No. 15 Shangxiadian Road, Cangshan District, Fuzhou 350002, China <email xlink:type="simple">lisongchen2002@hotmail.com</email></corresp><fn fn-type="other" id="fn002"><p>This article was submitted to Crop Science and Horticulture, a section of the journal Frontiers in Plant Science</p></fn></author-notes><pub-date pub-type="epub"><day>28</day><month>7</month><year>2015</year></pub-date><pub-date pub-type="collection"><year>2015</year></pub-date><volume>6</volume><elocation-id>585</elocation-id><history><date date-type="received"><day>13</day><month>4</month><year>2015</year></date><date date-type="accepted"><day>13</day><month>7</month><year>2015</year></date></history><permissions><copyright-statement>Copyright © 2015 Lu, Qi, Yang, Lee, Guo, Ye, Jia, Li and Chen.</copyright-statement><copyright-year>2015</copyright-year><copyright-holder>Lu, Qi, Yang, Lee, Guo, Ye, Jia, Li and Chen</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p></license></permissions><abstract><p>Seedlings of <italic>Citrus sinensis</italic> (L.) Osbeck were supplied with boron (B)-deficient (without H<sub>3</sub>BO<sub>3</sub>) or -sufficient (10 μM H<sub>3</sub>BO<sub>3</sub>) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of <italic>C. sinensis</italic> roots and leaves to B-deficiency at the transcriptional level.</p></abstract><kwd-group><kwd>boron-deficiency</kwd><kwd>cDNA-AFLP</kwd><kwd><italic>Citrus sinensis</italic></kwd><kwd>leaves</kwd><kwd>roots</kwd><kwd>transcript-derived fragment</kwd></kwd-group><funding-group><award-group><funding-source id="cn001">National Natural Science Foundation of China</funding-source><award-id rid="cn001">31171947</award-id></award-group><award-group><funding-source id="cn002">China Agriculture Research System</funding-source><award-id rid="cn002">CARS-27</award-id></award-group></funding-group><counts><fig-count count="2"></fig-count><table-count count="2"></table-count><equation-count count="0"></equation-count><ref-count count="71"></ref-count><page-count count="17"></page-count><word-count count="11506"></word-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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