Phylogeny and evolution of plant cyclic nucleotide-gated ion channel (CNGC) gene family and functional analyses of tomato CNGCs
Identifieur interne : 000044 ( Pmc/Curation ); précédent : 000043; suivant : 000045Phylogeny and evolution of plant cyclic nucleotide-gated ion channel (CNGC) gene family and functional analyses of tomato CNGCs
Auteurs : Mumtaz Ali Saand [République populaire de Chine] ; You-Ping Xu [République populaire de Chine] ; Jean-Pierre Munyampundu [République populaire de Chine] ; Wen Li [République populaire de Chine] ; Xuan-Rui Zhang [République populaire de Chine] ; Xin-Zhong Cai [République populaire de Chine]Source :
- DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes [ 1340-2838 ] ; 2015.
Abstract
Cyclic nucleotide-gated ion channels (CNGCs) are calcium-permeable channels that are involved in various biological functions. Nevertheless, phylogeny and function of plant CNGCs are not well understood. In this study, 333 CNGC genes from 15 plant species were identified using comprehensive bioinformatics approaches. Extensive bioinformatics analyses demonstrated that CNGCs of Group IVa were distinct to those of other groups in gene structure and amino acid sequence of cyclic nucleotide-binding domain. A CNGC-specific motif that recognizes all identified plant CNGCs was generated. Phylogenetic analysis indicated that CNGC proteins of flowering plant species formed five groups. However, CNGCs of the non-vascular plant
Url:
DOI: 10.1093/dnares/dsv029
PubMed: 26546226
PubMed Central: 4675716
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000044
Links to Exploration step
PMC:4675716Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogeny and evolution of plant cyclic nucleotide-gated ion channel (CNGC) gene family and functional analyses of tomato <italic>CNGCs</italic></title><author><name sortKey="Saand, Mumtaz Ali" sort="Saand, Mumtaz Ali" uniqKey="Saand M" first="Mumtaz Ali" last="Saand">Mumtaz Ali Saand</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xu, You Ping" sort="Xu, You Ping" uniqKey="Xu Y" first="You-Ping" last="Xu">You-Ping Xu</name><affiliation wicri:level="1"><nlm:aff id="af2"><addr-line>Centre of Analysis and Measurement</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Munyampundu, Jean Pierre" sort="Munyampundu, Jean Pierre" uniqKey="Munyampundu J" first="Jean-Pierre" last="Munyampundu">Jean-Pierre Munyampundu</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Wen" sort="Li, Wen" uniqKey="Li W" first="Wen" last="Li">Wen Li</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Xuan Rui" sort="Zhang, Xuan Rui" uniqKey="Zhang X" first="Xuan-Rui" last="Zhang">Xuan-Rui Zhang</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cai, Xin Zhong" sort="Cai, Xin Zhong" uniqKey="Cai X" first="Xin-Zhong" last="Cai">Xin-Zhong Cai</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26546226</idno><idno type="pmc">4675716</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675716</idno><idno type="RBID">PMC:4675716</idno><idno type="doi">10.1093/dnares/dsv029</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000044</idno><idno type="wicri:Area/Pmc/Curation">000044</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogeny and evolution of plant cyclic nucleotide-gated ion channel (CNGC) gene family and functional analyses of tomato <italic>CNGCs</italic></title><author><name sortKey="Saand, Mumtaz Ali" sort="Saand, Mumtaz Ali" uniqKey="Saand M" first="Mumtaz Ali" last="Saand">Mumtaz Ali Saand</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xu, You Ping" sort="Xu, You Ping" uniqKey="Xu Y" first="You-Ping" last="Xu">You-Ping Xu</name><affiliation wicri:level="1"><nlm:aff id="af2"><addr-line>Centre of Analysis and Measurement</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Munyampundu, Jean Pierre" sort="Munyampundu, Jean Pierre" uniqKey="Munyampundu J" first="Jean-Pierre" last="Munyampundu">Jean-Pierre Munyampundu</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Wen" sort="Li, Wen" uniqKey="Li W" first="Wen" last="Li">Wen Li</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Xuan Rui" sort="Zhang, Xuan Rui" uniqKey="Zhang X" first="Xuan-Rui" last="Zhang">Xuan-Rui Zhang</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cai, Xin Zhong" sort="Cai, Xin Zhong" uniqKey="Cai X" first="Xin-Zhong" last="Cai">Xin-Zhong Cai</name><affiliation wicri:level="1"><nlm:aff id="af1"><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes</title><idno type="ISSN">1340-2838</idno><idno type="eISSN">1756-1663</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Cyclic nucleotide-gated ion channels (CNGCs) are calcium-permeable channels that are involved in various biological functions. Nevertheless, phylogeny and function of plant CNGCs are not well understood. In this study, 333 CNGC genes from 15 plant species were identified using comprehensive bioinformatics approaches. Extensive bioinformatics analyses demonstrated that CNGCs of Group IVa were distinct to those of other groups in gene structure and amino acid sequence of cyclic nucleotide-binding domain. A CNGC-specific motif that recognizes all identified plant CNGCs was generated. Phylogenetic analysis indicated that CNGC proteins of flowering plant species formed five groups. However, CNGCs of the non-vascular plant <italic>Physcomitrella patens</italic> clustered only in two groups (IVa and IVb), while those of the vascular non-flowering plant <italic>Selaginella moellendorffii</italic> gathered in four (IVa, IVb, I and II). These data suggest that Group IV CNGCs are most ancient and Group III CNGCs are most recently evolved in flowering plants. Furthermore, silencing analyses revealed that a set of CNGC genes might be involved in disease resistance and abiotic stress responses in tomato and function of <italic>SlCNGC</italic>s does not correlate with the group that they are belonging to. Our results indicate that Group IVa CNGCs are structurally but not functionally unique among plant CNGCs.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kudla, J" uniqKey="Kudla J">J. Kudla</name></author><author><name sortKey="Batistic, O" uniqKey="Batistic O">O. Batistic</name></author><author><name sortKey="Hashimoto, K" uniqKey="Hashimoto K">K. Hashimoto</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jammes, F" uniqKey="Jammes F">F. Jammes</name></author><author><name sortKey="Hu, H C" uniqKey="Hu H">H.C. Hu</name></author><author><name sortKey="Villiers, F" uniqKey="Villiers F">F. Villiers</name></author><author><name sortKey="Bouten, R" uniqKey="Bouten R">R. Bouten</name></author><author><name sortKey="Kwak, J M" uniqKey="Kwak J">J.M. Kwak</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reddy, A S" uniqKey="Reddy A">A.S. Reddy</name></author><author><name sortKey="Ali, G S" uniqKey="Ali G">G.S. Ali</name></author><author><name sortKey="Celesnik, H" uniqKey="Celesnik H">H. Celesnik</name></author><author><name sortKey="Day, I S" uniqKey="Day I">I.S. Day</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Munemasa, S" uniqKey="Munemasa S">S. Munemasa</name></author><author><name sortKey="Oda, K" uniqKey="Oda K">K. Oda</name></author><author><name sortKey="Watanabe Sugimoto, M" uniqKey="Watanabe Sugimoto M">M. Watanabe-Sugimoto</name></author><author><name sortKey="Nakamura, Y" uniqKey="Nakamura Y">Y. Nakamura</name></author><author><name sortKey="Shimoishi, Y" uniqKey="Shimoishi Y">Y. Shimoishi</name></author><author><name sortKey="Murata, Y" uniqKey="Murata Y">Y. Murata</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Frietsch, S" uniqKey="Frietsch S">S. Frietsch</name></author><author><name sortKey="Wang, Y F" uniqKey="Wang Y">Y.F. Wang</name></author><author><name sortKey="Sladek, C" uniqKey="Sladek C">C. Sladek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Harada, A" uniqKey="Harada A">A. Harada</name></author><author><name sortKey="Sakai, T" uniqKey="Sakai T">T. Sakai</name></author><author><name sortKey="Okada, K" uniqKey="Okada K">K. Okada</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tracy, F E" uniqKey="Tracy F">F.E. Tracy</name></author><author><name sortKey="Gilliham, M" uniqKey="Gilliham M">M. Gilliham</name></author><author><name sortKey="Dodd, A N" uniqKey="Dodd A">A.N. Dodd</name></author><author><name sortKey="Webb, A A" uniqKey="Webb A">A.A. Webb</name></author><author><name sortKey="Tester, M" uniqKey="Tester M">M. Tester</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Qi, Z" uniqKey="Qi Z">Z. Qi</name></author><author><name sortKey="Verma, R" uniqKey="Verma R">R. Verma</name></author><author><name sortKey="Gehring, C" uniqKey="Gehring C">C. Gehring</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Talke, I N" uniqKey="Talke I">I.N. Talke</name></author><author><name sortKey="Blaudez, D" uniqKey="Blaudez D">D. Blaudez</name></author><author><name sortKey="Maathuis, F J" uniqKey="Maathuis F">F.J. Maathuis</name></author><author><name sortKey="Sanders, D" uniqKey="Sanders D">D. Sanders</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kaupp, U B" uniqKey="Kaupp U">U.B. Kaupp</name></author><author><name sortKey="Seifert, R" uniqKey="Seifert R">R. Seifert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chin, K" uniqKey="Chin K">K. Chin</name></author><author><name sortKey="Moeder, W" uniqKey="Moeder W">W. Moeder</name></author><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ma, W" uniqKey="Ma W">W. Ma</name></author><author><name sortKey="Qi, Z" uniqKey="Qi Z">Z. Qi</name></author><author><name sortKey="Smigel, A" uniqKey="Smigel A">A. Smigel</name></author><author><name sortKey="Walker, R K" uniqKey="Walker R">R.K. Walker</name></author><author><name sortKey="Verma, R" uniqKey="Verma R">R. Verma</name></author><author><name sortKey="Berkowitz, G A" uniqKey="Berkowitz G">G.A. Berkowitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Y F" uniqKey="Wang Y">Y.F. Wang</name></author><author><name sortKey="Munemasa, S" uniqKey="Munemasa S">S. Munemasa</name></author><author><name sortKey="Nishimura, N" uniqKey="Nishimura N">N. Nishimura</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gao, Q F" uniqKey="Gao Q">Q.F. Gao</name></author><author><name sortKey="Fei, C F" uniqKey="Fei C">C.F. Fei</name></author><author><name sortKey="Dong, J Y" uniqKey="Dong J">J.Y. Dong</name></author><author><name sortKey="Gu, L L" uniqKey="Gu L">L.L. Gu</name></author><author><name sortKey="Wang, Y F" uniqKey="Wang Y">Y.F. Wang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhou, L" uniqKey="Zhou L">L. Zhou</name></author><author><name sortKey="Lan, W" uniqKey="Lan W">W. Lan</name></author><author><name sortKey="Jiang, Y" uniqKey="Jiang Y">Y. Jiang</name></author><author><name sortKey="Fang, W" uniqKey="Fang W">W. Fang</name></author><author><name sortKey="Luan, S" uniqKey="Luan S">S. Luan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zelman, A K" uniqKey="Zelman A">A.K. Zelman</name></author><author><name sortKey="Dawe, A" uniqKey="Dawe A">A. Dawe</name></author><author><name sortKey="Gehring, C" uniqKey="Gehring C">C. Gehring</name></author><author><name sortKey="Berkowitz, G A" uniqKey="Berkowitz G">G.A. Berkowitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zelman, A K" uniqKey="Zelman A">A.K. Zelman</name></author><author><name sortKey="Dawe, A" uniqKey="Dawe A">A. Dawe</name></author><author><name sortKey="Berkowitz, G A" uniqKey="Berkowitz G">G.A. Berkowitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schuurink, R C" uniqKey="Schuurink R">R.C. Schuurink</name></author><author><name sortKey="Shartzer, S F" uniqKey="Shartzer S">S.F. Shartzer</name></author><author><name sortKey="Fath, A" uniqKey="Fath A">A. Fath</name></author><author><name sortKey="Jones, R L" uniqKey="Jones R">R.L. Jones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maser, P" uniqKey="Maser P">P. Maser</name></author><author><name sortKey="Thomine, S" uniqKey="Thomine S">S. Thomine</name></author><author><name sortKey="Schroeder, J I" uniqKey="Schroeder J">J.I. Schroeder</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bridges, D" uniqKey="Bridges D">D. Bridges</name></author><author><name sortKey="Fraser, M E" uniqKey="Fraser M">M.E. Fraser</name></author><author><name sortKey="Moorhead, G B" uniqKey="Moorhead G">G.B. Moorhead</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nawaz, Z" uniqKey="Nawaz Z">Z. Nawaz</name></author><author><name sortKey="Kakar, K U" uniqKey="Kakar K">K.U. Kakar</name></author><author><name sortKey="Saand, M A" uniqKey="Saand M">M.A. Saand</name></author><author><name sortKey="Shu, Q Y" uniqKey="Shu Q">Q.Y. Shu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ward, J M" uniqKey="Ward J">J.M. Ward</name></author><author><name sortKey="Maser, P" uniqKey="Maser P">P. Maser</name></author><author><name sortKey="Schroeder, J I" uniqKey="Schroeder J">J.I. Schroeder</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, J" uniqKey="Chen J">J. Chen</name></author><author><name sortKey="Yin, H" uniqKey="Yin H">H. Yin</name></author><author><name sortKey="Gu, J" uniqKey="Gu J">J. Gu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Verret, F" uniqKey="Verret F">F. Verret</name></author><author><name sortKey="Wheeler, G" uniqKey="Wheeler G">G. Wheeler</name></author><author><name sortKey="Taylor, A R" uniqKey="Taylor A">A.R. Taylor</name></author><author><name sortKey="Farnham, G" uniqKey="Farnham G">G. Farnham</name></author><author><name sortKey="Brownlee, C" uniqKey="Brownlee C">C. Brownlee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kaplan, B" uniqKey="Kaplan B">B. Kaplan</name></author><author><name sortKey="Sherman, T" uniqKey="Sherman T">T. Sherman</name></author><author><name sortKey="Fromm, H" uniqKey="Fromm H">H. Fromm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sherman, T" uniqKey="Sherman T">T. Sherman</name></author><author><name sortKey="Fromm, H" uniqKey="Fromm H">H. Fromm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abdel Hamid, H" uniqKey="Abdel Hamid H">H. Abdel-Hamid</name></author><author><name sortKey="Chin, K" uniqKey="Chin K">K. Chin</name></author><author><name sortKey="Moeder, W" uniqKey="Moeder W">W. Moeder</name></author><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ma, W" uniqKey="Ma W">W. Ma</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ma, W" uniqKey="Ma W">W. Ma</name></author><author><name sortKey="Berkowitz, G A" uniqKey="Berkowitz G">G.A. Berkowitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moeder, W" uniqKey="Moeder W">W. Moeder</name></author><author><name sortKey="Urquhart, W" uniqKey="Urquhart W">W. Urquhart</name></author><author><name sortKey="Ung, H" uniqKey="Ung H">H. Ung</name></author><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ma, W" uniqKey="Ma W">W. Ma</name></author><author><name sortKey="Ali, R" uniqKey="Ali R">R. Ali</name></author><author><name sortKey="Berkowitz, G A" uniqKey="Berkowitz G">G.A. Berkowitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gobert, A" uniqKey="Gobert A">A. Gobert</name></author><author><name sortKey="Park, G" uniqKey="Park G">G. Park</name></author><author><name sortKey="Amtmann, A" uniqKey="Amtmann A">A. Amtmann</name></author><author><name sortKey="Sanders, D" uniqKey="Sanders D">D. Sanders</name></author><author><name sortKey="Maathuis, F J" uniqKey="Maathuis F">F.J. Maathuis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Borsics, T" uniqKey="Borsics T">T. Borsics</name></author><author><name sortKey="Webb, D" uniqKey="Webb D">D. Webb</name></author><author><name sortKey="Andeme Ondzighi, C" uniqKey="Andeme Ondzighi C">C. Andeme-Ondzighi</name></author><author><name sortKey="Staehelin, L A" uniqKey="Staehelin L">L.A. Staehelin</name></author><author><name sortKey="Christopher, D A" uniqKey="Christopher D">D.A. Christopher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tunc Ozdemir, M" uniqKey="Tunc Ozdemir M">M. Tunc-Ozdemir</name></author><author><name sortKey="Tang, C" uniqKey="Tang C">C. Tang</name></author><author><name sortKey="Ishka, M R" uniqKey="Ishka M">M.R. Ishka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author><author><name sortKey="Kachroo, P" uniqKey="Kachroo P">P. Kachroo</name></author><author><name sortKey="Tsui, F" uniqKey="Tsui F">F. Tsui</name></author><author><name sortKey="Sharma, S B" uniqKey="Sharma S">S.B. Sharma</name></author><author><name sortKey="Shah, J" uniqKey="Shah J">J. Shah</name></author><author><name sortKey="Klessig, D F" uniqKey="Klessig D">D.F. Klessig</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author><author><name sortKey="Moeder, W" uniqKey="Moeder W">W. Moeder</name></author><author><name sortKey="Kang, H G" uniqKey="Kang H">H.G. Kang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yu, I C" uniqKey="Yu I">I.C. Yu</name></author><author><name sortKey="Parker, J" uniqKey="Parker J">J. Parker</name></author><author><name sortKey="Bent, A F" uniqKey="Bent A">A.F. Bent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Clough, S J" uniqKey="Clough S">S.J. Clough</name></author><author><name sortKey="Fengler, K A" uniqKey="Fengler K">K.A. Fengler</name></author><author><name sortKey="Yu, I C" uniqKey="Yu I">I.C. Yu</name></author><author><name sortKey="Lippok, B" uniqKey="Lippok B">B. Lippok</name></author><author><name sortKey="Smith, R K" uniqKey="Smith R">R.K. Smith</name></author><author><name sortKey="Bent, A F" uniqKey="Bent A">A.F. Bent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Balague, C" uniqKey="Balague C">C. Balague</name></author><author><name sortKey="Lin, B" uniqKey="Lin B">B. Lin</name></author><author><name sortKey="Alcon, C" uniqKey="Alcon C">C. Alcon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jurkowski, G I" uniqKey="Jurkowski G">G.I. Jurkowski</name></author><author><name sortKey="Smith, R K" uniqKey="Smith R">R.K. Smith</name></author><author><name sortKey="Yu, I C" uniqKey="Yu I">I.C. Yu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ali, R" uniqKey="Ali R">R. Ali</name></author><author><name sortKey="Ma, W" uniqKey="Ma W">W. Ma</name></author><author><name sortKey="Lemtiri Chlieh, F" uniqKey="Lemtiri Chlieh F">F. Lemtiri-Chlieh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Finka, A" uniqKey="Finka A">A. Finka</name></author><author><name sortKey="Cuendet, A F" uniqKey="Cuendet A">A.F. Cuendet</name></author><author><name sortKey="Maathuis, F J" uniqKey="Maathuis F">F.J. Maathuis</name></author><author><name sortKey="Saidi, Y" uniqKey="Saidi Y">Y. Saidi</name></author><author><name sortKey="Goloubinoff, P" uniqKey="Goloubinoff P">P. Goloubinoff</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chin, K" uniqKey="Chin K">K. Chin</name></author><author><name sortKey="Defalco, T A" uniqKey="Defalco T">T.A. DeFalco</name></author><author><name sortKey="Moeder, W" uniqKey="Moeder W">W. Moeder</name></author><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fortuna, A" uniqKey="Fortuna A">A. Fortuna</name></author><author><name sortKey="Lee, J" uniqKey="Lee J">J. Lee</name></author><author><name sortKey="Ung, H" uniqKey="Ung H">H. Ung</name></author><author><name sortKey="Chin, K" uniqKey="Chin K">K. Chin</name></author><author><name sortKey="Moeder, W" uniqKey="Moeder W">W. Moeder</name></author><author><name sortKey="Yoshioka, K" uniqKey="Yoshioka K">K. Yoshioka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maathuis, F J" uniqKey="Maathuis F">F.J. Maathuis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kugler, A" uniqKey="Kugler A">A. Kugler</name></author><author><name sortKey="Kohler, B" uniqKey="Kohler B">B. Kohler</name></author><author><name sortKey="Palme, K" uniqKey="Palme K">K. Palme</name></author><author><name sortKey="Wolff, P" uniqKey="Wolff P">P. Wolff</name></author><author><name sortKey="Dietrich, P" uniqKey="Dietrich P">P. Dietrich</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yuen, C Y" uniqKey="Yuen C">C.Y. Yuen</name></author><author><name sortKey="Christopher, D A" uniqKey="Christopher D">D.A. Christopher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saand, M A" uniqKey="Saand M">M.A. Saand</name></author><author><name sortKey="Xu, Y P" uniqKey="Xu Y">Y.P. Xu</name></author><author><name sortKey="Li, W" uniqKey="Li W">W. Li</name></author><author><name sortKey="Wang, J P" uniqKey="Wang J">J.P. Wang</name></author><author><name sortKey="Cai, X Z" uniqKey="Cai X">X.Z. Cai</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nicholas, K B" uniqKey="Nicholas K">K.B. Nicholas</name></author><author><name sortKey="Nicholas, H" uniqKey="Nicholas H">H. Nicholas</name></author><author><name sortKey="Deerfield, D" uniqKey="Deerfield D">D. Deerfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K. Tamura</name></author><author><name sortKey="Peterson, D" uniqKey="Peterson D">D. Peterson</name></author><author><name sortKey="Peterson, N" uniqKey="Peterson N">N. Peterson</name></author><author><name sortKey="Stecher, G" uniqKey="Stecher G">G. Stecher</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M. Nei</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S. Kumar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Larkin, M A" uniqKey="Larkin M">M.A. Larkin</name></author><author><name sortKey="Blackshields, G" uniqKey="Blackshields G">G. Blackshields</name></author><author><name sortKey="Brown, N P" uniqKey="Brown N">N.P. Brown</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, W" uniqKey="Li W">W. Li</name></author><author><name sortKey="Xu, Y P" uniqKey="Xu Y">Y.P. Xu</name></author><author><name sortKey="Zhang, Z X" uniqKey="Zhang Z">Z.X. Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhao, Y" uniqKey="Zhao Y">Y. Zhao</name></author><author><name sortKey="Liu, W" uniqKey="Liu W">W. Liu</name></author><author><name sortKey="Xu, Y P" uniqKey="Xu Y">Y.P. Xu</name></author><author><name sortKey="Cao, J Y" uniqKey="Cao J">J.Y. Cao</name></author><author><name sortKey="Braam, J" uniqKey="Braam J">J. Braam</name></author><author><name sortKey="Cai, X Z" uniqKey="Cai X">X.Z. Cai</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, C" uniqKey="Wang C">C. Wang</name></author><author><name sortKey="Cai, X" uniqKey="Cai X">X. Cai</name></author><author><name sortKey="Wang, X" uniqKey="Wang X">X. Wang</name></author><author><name sortKey="Zheng, Z" uniqKey="Zheng Z">Z. Zheng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cai, X Z" uniqKey="Cai X">X.Z. Cai</name></author><author><name sortKey="Wang, C" uniqKey="Wang C">C. Wang</name></author><author><name sortKey="Xu, Y" uniqKey="Xu Y">Y. Xu</name></author><author><name sortKey="Xu, Q" uniqKey="Xu Q">Q. Xu</name></author><author><name sortKey="Zheng, Z" uniqKey="Zheng Z">Z. Zheng</name></author><author><name sortKey="Zhou, X" uniqKey="Zhou X">X. Zhou</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cheng, W S" uniqKey="Cheng W">W.S. Cheng</name></author><author><name sortKey="Xu, Q F" uniqKey="Xu Q">Q.F. Xu</name></author><author><name sortKey="Li, F" uniqKey="Li F">F. Li</name></author><author><name sortKey="Xu, Y P" uniqKey="Xu Y">Y.P. Xu</name></author><author><name sortKey="Cai, X Z" uniqKey="Cai X">X.Z. Cai</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, M" uniqKey="Zhu M">M. Zhu</name></author><author><name sortKey="Chen, G" uniqKey="Chen G">G. Chen</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J. Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guo, A Y" uniqKey="Guo A">A.Y. Guo</name></author><author><name sortKey="Zhu, Q H" uniqKey="Zhu Q">Q.H. Zhu</name></author><author><name sortKey="Chen, X" uniqKey="Chen X">X. Chen</name></author><author><name sortKey="Luo, J C" uniqKey="Luo J">J.C. Luo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cherel, I" uniqKey="Cherel I">I. Cherel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Su, H" uniqKey="Su H">H. Su</name></author><author><name sortKey="Golldack, D" uniqKey="Golldack D">D. Golldack</name></author><author><name sortKey="Katsuhara, M" uniqKey="Katsuhara M">M. Katsuhara</name></author><author><name sortKey="Zhao, C" uniqKey="Zhao C">C. Zhao</name></author><author><name sortKey="Bohnert, H J" uniqKey="Bohnert H">H.J. Bohnert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fischer, C" uniqKey="Fischer C">C. Fischer</name></author><author><name sortKey="Kugler, A" uniqKey="Kugler A">A. Kugler</name></author><author><name sortKey="Hoth, S" uniqKey="Hoth S">S. Hoth</name></author><author><name sortKey="Dietrich, P" uniqKey="Dietrich P">P. Dietrich</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">DNA Res</journal-id><journal-id journal-id-type="iso-abbrev">DNA Res</journal-id><journal-id journal-id-type="publisher-id">dnares</journal-id><journal-id journal-id-type="hwp">dnares</journal-id><journal-title-group><journal-title>DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes</journal-title></journal-title-group><issn pub-type="ppub">1340-2838</issn><issn pub-type="epub">1756-1663</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26546226</article-id><article-id pub-id-type="pmc">4675716</article-id><article-id pub-id-type="doi">10.1093/dnares/dsv029</article-id><article-id pub-id-type="publisher-id">dsv029</article-id><article-categories><subj-group subj-group-type="heading"><subject>Full Papers</subject></subj-group></article-categories><title-group><article-title>Phylogeny and evolution of plant cyclic nucleotide-gated ion channel (CNGC) gene family and functional analyses of tomato <italic>CNGCs</italic></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Saand</surname><given-names>Mumtaz Ali</given-names></name><xref ref-type="aff" rid="af1">1</xref></contrib><contrib contrib-type="author"><name><surname>Xu</surname><given-names>You-Ping</given-names></name><xref ref-type="aff" rid="af2">2</xref></contrib><contrib contrib-type="author"><name><surname>Munyampundu</surname><given-names>Jean-Pierre</given-names></name><xref ref-type="aff" rid="af1">1</xref></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Wen</given-names></name><xref ref-type="aff" rid="af1">1</xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Xuan-Rui</given-names></name><xref ref-type="aff" rid="af1">1</xref></contrib><contrib contrib-type="author"><name><surname>Cai</surname><given-names>Xin-Zhong</given-names></name><xref ref-type="aff" rid="af1">1</xref><xref ref-type="corresp" rid="cor1">*</xref></contrib><aff id="af1"><label>1</label><addr-line>Institute of Biotechnology, College of Agriculture and Biotechnology</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></aff><aff id="af2"><label>2</label><addr-line>Centre of Analysis and Measurement</addr-line>,<institution>Zhejiang University</institution>,<addr-line>Hangzhou 310058</addr-line>,<country>China</country></aff></contrib-group><author-notes><corresp id="cor1"><label>*</label>To whom correspondence should be addressed. Tel. +86 571 88982936. Fax. +86 571 88982936. E-mail: <email>xzhcai@zju.edu.cn</email></corresp><fn id="AN1" fn-type="con"><p>Edited by Dr Kazuo Shinozaki</p></fn></author-notes><pub-date pub-type="ppub"><month>12</month><year>2015</year></pub-date><pub-date pub-type="epub"><day>05</day><month>11</month><year>2015</year></pub-date><pub-date pub-type="pmc-release"><day>05</day><month>11</month><year>2015</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>22</volume><issue>6</issue><fpage>471</fpage><lpage>483</lpage><history><date date-type="received"><day>4</day><month>4</month><year>2015</year></date><date date-type="accepted"><day>12</day><month>10</month><year>2015</year></date></history><permissions><copyright-statement>© The Author 2015. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.</copyright-statement><copyright-year>2015</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/">http://creativecommons.org/licenses/by-nc/4.0/</ext-link>), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com</license-p></license></permissions><self-uri content-type="pdf" xlink:href="dsv029.pdf"></self-uri><abstract><p>Cyclic nucleotide-gated ion channels (CNGCs) are calcium-permeable channels that are involved in various biological functions. Nevertheless, phylogeny and function of plant CNGCs are not well understood. In this study, 333 CNGC genes from 15 plant species were identified using comprehensive bioinformatics approaches. Extensive bioinformatics analyses demonstrated that CNGCs of Group IVa were distinct to those of other groups in gene structure and amino acid sequence of cyclic nucleotide-binding domain. A CNGC-specific motif that recognizes all identified plant CNGCs was generated. Phylogenetic analysis indicated that CNGC proteins of flowering plant species formed five groups. However, CNGCs of the non-vascular plant <italic>Physcomitrella patens</italic> clustered only in two groups (IVa and IVb), while those of the vascular non-flowering plant <italic>Selaginella moellendorffii</italic> gathered in four (IVa, IVb, I and II). These data suggest that Group IV CNGCs are most ancient and Group III CNGCs are most recently evolved in flowering plants. Furthermore, silencing analyses revealed that a set of CNGC genes might be involved in disease resistance and abiotic stress responses in tomato and function of <italic>SlCNGC</italic>s does not correlate with the group that they are belonging to. Our results indicate that Group IVa CNGCs are structurally but not functionally unique among plant CNGCs.</p></abstract><kwd-group><kwd>abiotic stress response</kwd><kwd>cyclic nucleotide-gated channel</kwd><kwd>gene structure</kwd><kwd>phylogeny</kwd><kwd>resistance</kwd></kwd-group><funding-group><award-group id="funding-1"><funding-source>the Genetically Modified Organisms Breeding Major Projects</funding-source><award-id>2014ZX0800905B</award-id></award-group><award-group id="funding-2"><funding-source>the Special Fund for Agro-scientific Research in the Public Interest</funding-source><award-id>201103016</award-id><award-id>20110101110092</award-id></award-group><award-group id="funding-3"><funding-source>the Program for New Century 151 Talents of Zhejiang Province</funding-source></award-group></funding-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Pmc/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000044 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd -nk 000044 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= Pmc
|étape= Curation
|type= RBID
|clé= PMC:4675716
|texte= Phylogeny and evolution of plant cyclic nucleotide-gated ion channel (CNGC) gene family and functional analyses of tomato CNGCs
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Curation/RBID.i -Sk "pubmed:26546226" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |