Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.)
Identifieur interne : 002067 ( Ncbi/Merge ); précédent : 002066; suivant : 002068Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.)
Auteurs : Ming-Yue Zhang [République populaire de Chine] ; Cheng Xue [République populaire de Chine] ; Linlin Xu [République populaire de Chine] ; Honghe Sun [République populaire de Chine] ; Meng-Fan Qin [République populaire de Chine] ; Shaoling Zhang [République populaire de Chine] ; Jun Wu [République populaire de Chine]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
The transcriptomes of five pear cultivars, ‘Hosui’ (
Url:
DOI: 10.1038/srep28130
PubMed: 27305967
PubMed Central: 4910100
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<author><name sortKey="Sun, Honghe" sort="Sun, Honghe" uniqKey="Sun H" first="Honghe" last="Sun">Honghe Sun</name>
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<author><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name>
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<author><name sortKey="Zhang, Ming Yue" sort="Zhang, Ming Yue" uniqKey="Zhang M" first="Ming-Yue" last="Zhang">Ming-Yue Zhang</name>
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, Nanjing 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Xue, Cheng" sort="Xue, Cheng" uniqKey="Xue C" first="Cheng" last="Xue">Cheng Xue</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Xu, Linlin" sort="Xu, Linlin" uniqKey="Xu L" first="Linlin" last="Xu">Linlin Xu</name>
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, Nanjing 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Sun, Honghe" sort="Sun, Honghe" uniqKey="Sun H" first="Honghe" last="Sun">Honghe Sun</name>
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, Beijing, 100097,<country>China</country>
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, Nanjing 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Zhang, Shaoling" sort="Zhang, Shaoling" uniqKey="Zhang S" first="Shaoling" last="Zhang">Shaoling Zhang</name>
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<author><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name>
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, Nanjing 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<series><title level="j">Scientific Reports</title>
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<front><div type="abstract" xml:lang="en"><p>The transcriptomes of five pear cultivars, ‘Hosui’ (<italic>P. pyrifolia</italic>
), ‘Yali’ (<italic>P. bretschneideri</italic>
), ‘Kuerlexiangli’ (<italic>P. sinkiangensis</italic>
), ‘Nanguoli’ (<italic>P. ussuriensis</italic>
), and ‘Starkrimson’ (<italic>P. communis</italic>
) were sequenced at seven key fruit developmental stages, from fruit setting to maturation and fruit senescence after harvesting. In total, 33,136 genes that could be mapped by reads, were analyzed. Most gene expression cluster models showed a steadily decreasing trend. Gene expression patterns had obvious differences according to maturity type, that is, post-ripening cultivars were still vigorous at maturity, and showed a higher proportion of up-regulated genes; non post-ripening cultivars had a gradually decreasing tendency during fruit maturation. Meanwhile, differentially expressed genes related to fruit quality and development, such as stone cells, sugar, acid and hormones, were identified. Co-expression analysis revealed that several ethylene synthesis genes and polyphenoloxidase-related genes interacted with each other directly, and an indirect relationship was reflected between ethylene synthesis genes and ethylene response genes. In addition, the highly diverse SNPs represented the great differences between oriental and occidental pears. Understanding how RNA-seq based gene-expression patterns and differential gene expression contribute to fruit quality allows us to build models for gene-expression for fruit development of <italic>Pyrus</italic>
species.</p>
</div>
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</back>
</TEI>
<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Sci Rep</journal-id>
<journal-id journal-id-type="iso-abbrev">Sci Rep</journal-id>
<journal-title-group><journal-title>Scientific Reports</journal-title>
</journal-title-group>
<issn pub-type="epub">2045-2322</issn>
<publisher><publisher-name>Nature Publishing Group</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">27305967</article-id>
<article-id pub-id-type="pmc">4910100</article-id>
<article-id pub-id-type="pii">srep28130</article-id>
<article-id pub-id-type="doi">10.1038/srep28130</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (<italic>Pyrus L.</italic>
)</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Zhang</surname>
<given-names>Ming-Yue</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Xue</surname>
<given-names>Cheng</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Xu</surname>
<given-names>Linlin</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Sun</surname>
<given-names>Honghe</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Qin</surname>
<given-names>Meng-Fan</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Zhang</surname>
<given-names>Shaoling</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Wu</surname>
<given-names>Jun</given-names>
</name>
<xref ref-type="corresp" rid="c1">a</xref>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<aff id="a1"><label>1</label>
<institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>
, Nanjing 210095,<country>China</country>
</aff>
<aff id="a2"><label>2</label>
<institution>Beijing Academy of Agriculture and Forestry Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China)</institution>
, Beijing, 100097,<country>China</country>
</aff>
</contrib-group>
<author-notes><corresp id="c1"><label>a</label>
<email>wujun@njau.edu.cn</email>
</corresp>
</author-notes>
<pub-date pub-type="epub"><day>16</day>
<month>06</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection"><year>2016</year>
</pub-date>
<volume>6</volume>
<elocation-id>28130</elocation-id>
<history><date date-type="received"><day>10</day>
<month>11</month>
<year>2015</year>
</date>
<date date-type="accepted"><day>01</day>
<month>06</month>
<year>2016</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2016, Macmillan Publishers Limited</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>Macmillan Publishers Limited</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0/"><pmc-comment>author-paid</pmc-comment>
<license-p>This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
</license-p>
</license>
</permissions>
<abstract><p>The transcriptomes of five pear cultivars, ‘Hosui’ (<italic>P. pyrifolia</italic>
), ‘Yali’ (<italic>P. bretschneideri</italic>
), ‘Kuerlexiangli’ (<italic>P. sinkiangensis</italic>
), ‘Nanguoli’ (<italic>P. ussuriensis</italic>
), and ‘Starkrimson’ (<italic>P. communis</italic>
) were sequenced at seven key fruit developmental stages, from fruit setting to maturation and fruit senescence after harvesting. In total, 33,136 genes that could be mapped by reads, were analyzed. Most gene expression cluster models showed a steadily decreasing trend. Gene expression patterns had obvious differences according to maturity type, that is, post-ripening cultivars were still vigorous at maturity, and showed a higher proportion of up-regulated genes; non post-ripening cultivars had a gradually decreasing tendency during fruit maturation. Meanwhile, differentially expressed genes related to fruit quality and development, such as stone cells, sugar, acid and hormones, were identified. Co-expression analysis revealed that several ethylene synthesis genes and polyphenoloxidase-related genes interacted with each other directly, and an indirect relationship was reflected between ethylene synthesis genes and ethylene response genes. In addition, the highly diverse SNPs represented the great differences between oriental and occidental pears. Understanding how RNA-seq based gene-expression patterns and differential gene expression contribute to fruit quality allows us to build models for gene-expression for fruit development of <italic>Pyrus</italic>
species.</p>
</abstract>
</article-meta>
</front>
<floats-group><fig id="f1"><label>Figure 1</label>
<caption><title>Cluster tree of five pear cultivars during fruit development and maturation stages.</title>
<p>HS: Hosui, YL: Yali, KRLXL: Kuerlexiangli, NG: Nanguo, RC: Red Clapp’s Favorite mutant (‘Starkrimson’), 1–7: seven fruit developmental stages. Spearman correlation tree has two major groups, I and II and four subgroups, A–D.</p>
</caption>
<graphic xlink:href="srep28130-f1"></graphic>
</fig>
<fig id="f2"><label>Figure 2</label>
<caption><title>Gene expression clusters for different Pyrus species.</title>
<p>(<bold>a</bold>
) Main clusters of gene expression pattern of five Pyrus species. X-axis: type of main clusters and Y-axis: number of genes in different clusters. (<bold>b</bold>
) Significance level of gene number in different clusters for five species. (<bold>c</bold>
) Venn diagram for gene number in the continuous decrease pattern (cluster 3).</p>
</caption>
<graphic xlink:href="srep28130-f2"></graphic>
</fig>
<fig id="f3"><label>Figure 3</label>
<caption><title>Common and different gene expression clusters and their function in five cultivars.</title>
<p>Two main gene expression patterns are illustrated on the left, namely cluster 3 and cluster 16. Functional analysis based on the five cultivars is presented in different colors.</p>
</caption>
<graphic xlink:href="srep28130-f3"></graphic>
</fig>
<fig id="f4"><label>Figure 4</label>
<caption><title>Up- and down-regulated genes from maturity to post harvest in pear species.</title>
<p>X-axis indicates five samples, and Y-axis is gene number from maturity to post harvest. Bars with diagonal lines are up-regulated gene numbers, and solid bars are down-regulated gene numbers.</p>
</caption>
<graphic xlink:href="srep28130-f4"></graphic>
</fig>
<fig id="f5"><label>Figure 5</label>
<caption><title>Venn diagram of up- and down-regulated genes.</title>
</caption>
<graphic xlink:href="srep28130-f5"></graphic>
</fig>
<fig id="f6"><label>Figure 6</label>
<caption><title>Network of ethylene-related genes for pears.</title>
<p>ACS: 1-aminocyclo-propane-1-carboxylic acid synthase; SAMS: S-adomet synthetase; LAC: laccase.</p>
</caption>
<graphic xlink:href="srep28130-f6"></graphic>
</fig>
<fig id="f7"><label>Figure 7</label>
<caption><title>SNP number and effectiveness in five pear species.</title>
<p>X-axis presents SNP effectiveness number, and Y-axis shows five pear species. SNP effectiveness types: 1 SNPs are present in the upstream region of 2 Kb. 2 SNPs are present in the downstream region of 2 Kb. 3 SNPs are present 2 bp around the boundaries of exon and intron. 4 SNPs are in introns caused by selective splicing. 5 SNPs appear in the initiation codon and change the function. 6 SNPs appear in the termination codon and change the function. 7 SNPs appear in the exon and cause synonymous mutation. 8 SNPs are present in the exon and cause premature stop codons. 9 SNPs appear in the exon and cause nonsynonymous mutation. 10 SNPs appear in the termination codon and do not change the function. 11 SNPs appear in the initiation codon and do not change the function. 12 SNPs meet the missing ‘N’ in the genome.</p>
</caption>
<graphic xlink:href="srep28130-f7"></graphic>
</fig>
<fig id="f8"><label>Figure 8</label>
<caption><title>Comparison of RNA-seq based gene expression and q-PCR verification.</title>
<p>Figures represent expression of four genes for seven fruit developmental stages of ‘Red Clapp’s Favorite’. X-axis represents the fruit developmental stages. Y-axis on the left shows the relative gene expression levels of q-PCR by bar charts, and the Y-axis on right illustrated the relative values of RPKM with line charts. The RPKM of Y-axis on the right were unified by dividing the first stage’s gene expression value in (<bold>A–C</bold>
).</p>
</caption>
<graphic xlink:href="srep28130-f8"></graphic>
</fig>
<table-wrap position="float" id="t1"><label>Table 1</label>
<caption><title>Read number and unique gene mapping for RNA-seq.</title>
</caption>
<table frame="hsides" rules="groups" border="1"><colgroup><col align="left"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
</colgroup>
<thead valign="bottom"><tr><th align="left" valign="top" charoff="50">Samples</th>
<th align="center" valign="top" charoff="50">No. of raw reads</th>
<th align="center" valign="top" charoff="50">No. of clean reads</th>
<th align="center" valign="top" charoff="50">No. of mapping genes</th>
<th align="center" valign="top" charoff="50">Percentage of clean read mapping rates (%)</th>
</tr>
</thead>
<tbody valign="top"><tr><td align="left" valign="top" charoff="50">HS1</td>
<td align="center" valign="top" charoff="50">11,302,851</td>
<td align="center" valign="top" charoff="50">10,328,076</td>
<td align="center" valign="top" charoff="50">25,688</td>
<td align="center" valign="top" charoff="50">75.63</td>
</tr>
<tr><td align="left" valign="top" charoff="50">HS2</td>
<td align="center" valign="top" charoff="50">10,154,316</td>
<td align="center" valign="top" charoff="50">9,197,441</td>
<td align="center" valign="top" charoff="50">24,765</td>
<td align="center" valign="top" charoff="50">75.11</td>
</tr>
<tr><td align="left" valign="top" charoff="50">HS3</td>
<td align="center" valign="top" charoff="50">12,117,316</td>
<td align="center" valign="top" charoff="50">9,398,656</td>
<td align="center" valign="top" charoff="50">23,071</td>
<td align="center" valign="top" charoff="50">74.06</td>
</tr>
<tr><td align="left" valign="top" charoff="50">HS4</td>
<td align="center" valign="top" charoff="50">11,213,396</td>
<td align="center" valign="top" charoff="50">10,109,015</td>
<td align="center" valign="top" charoff="50">23,635</td>
<td align="center" valign="top" charoff="50">74.63</td>
</tr>
<tr><td align="left" valign="top" charoff="50">HS5</td>
<td align="center" valign="top" charoff="50">11,243,703</td>
<td align="center" valign="top" charoff="50">10,216,762</td>
<td align="center" valign="top" charoff="50">22,655</td>
<td align="center" valign="top" charoff="50">75.76</td>
</tr>
<tr><td align="left" valign="top" charoff="50">HS6</td>
<td align="center" valign="top" charoff="50">11,950,723</td>
<td align="center" valign="top" charoff="50">11,000,668</td>
<td align="center" valign="top" charoff="50">22,663</td>
<td align="center" valign="top" charoff="50">75.42</td>
</tr>
<tr><td align="left" valign="top" charoff="50">HS7</td>
<td align="center" valign="top" charoff="50">10,668,693</td>
<td align="center" valign="top" charoff="50">9,779,232</td>
<td align="center" valign="top" charoff="50">21,374</td>
<td align="center" valign="top" charoff="50">73.93</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL1</td>
<td align="center" valign="top" charoff="50">12,362,986</td>
<td align="center" valign="top" charoff="50">11,781,418</td>
<td align="center" valign="top" charoff="50">26,289</td>
<td align="center" valign="top" charoff="50">73.72</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL2</td>
<td align="center" valign="top" charoff="50">12,239,312</td>
<td align="center" valign="top" charoff="50">11,619,212</td>
<td align="center" valign="top" charoff="50">24,464</td>
<td align="center" valign="top" charoff="50">73.25</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL3</td>
<td align="center" valign="top" charoff="50">11,970,718</td>
<td align="center" valign="top" charoff="50">11,341,031</td>
<td align="center" valign="top" charoff="50">24,826</td>
<td align="center" valign="top" charoff="50">73.18</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL4</td>
<td align="center" valign="top" charoff="50">12,395,731</td>
<td align="center" valign="top" charoff="50">11,272,539</td>
<td align="center" valign="top" charoff="50">23,929</td>
<td align="center" valign="top" charoff="50">73.38</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL5</td>
<td align="center" valign="top" charoff="50">11,885,029</td>
<td align="center" valign="top" charoff="50">10,253,055</td>
<td align="center" valign="top" charoff="50">23,148</td>
<td align="center" valign="top" charoff="50">72.44</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL6</td>
<td align="center" valign="top" charoff="50">12,197,320</td>
<td align="center" valign="top" charoff="50">11,152,288</td>
<td align="center" valign="top" charoff="50">23,282</td>
<td align="center" valign="top" charoff="50">73.74</td>
</tr>
<tr><td align="left" valign="top" charoff="50">KRLXL7</td>
<td align="center" valign="top" charoff="50">11,847,303</td>
<td align="center" valign="top" charoff="50">11,274,519</td>
<td align="center" valign="top" charoff="50">22,249</td>
<td align="center" valign="top" charoff="50">73.20</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG1</td>
<td align="center" valign="top" charoff="50">12,516,088</td>
<td align="center" valign="top" charoff="50">12,006,578</td>
<td align="center" valign="top" charoff="50">26,173</td>
<td align="center" valign="top" charoff="50">74.42</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG2</td>
<td align="center" valign="top" charoff="50">11,942,855</td>
<td align="center" valign="top" charoff="50">11,447,523</td>
<td align="center" valign="top" charoff="50">25,681</td>
<td align="center" valign="top" charoff="50">74.55</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG3</td>
<td align="center" valign="top" charoff="50">11,548,878</td>
<td align="center" valign="top" charoff="50">9,242,452</td>
<td align="center" valign="top" charoff="50">23,346</td>
<td align="center" valign="top" charoff="50">75.35</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG4</td>
<td align="center" valign="top" charoff="50">12,396,607</td>
<td align="center" valign="top" charoff="50">10,214,122</td>
<td align="center" valign="top" charoff="50">23,310</td>
<td align="center" valign="top" charoff="50">75.36</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG5</td>
<td align="center" valign="top" charoff="50">12,533,756</td>
<td align="center" valign="top" charoff="50">8,731,570</td>
<td align="center" valign="top" charoff="50">21,469</td>
<td align="center" valign="top" charoff="50">75.09</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG6</td>
<td align="center" valign="top" charoff="50">12,428,560</td>
<td align="center" valign="top" charoff="50">11,425,645</td>
<td align="center" valign="top" charoff="50">22,259</td>
<td align="center" valign="top" charoff="50">74.98</td>
</tr>
<tr><td align="left" valign="top" charoff="50">NG7</td>
<td align="center" valign="top" charoff="50">12,461,123</td>
<td align="center" valign="top" charoff="50">11,408,415</td>
<td align="center" valign="top" charoff="50">21,801</td>
<td align="center" valign="top" charoff="50">74.97</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC1</td>
<td align="center" valign="top" charoff="50">11,854,995</td>
<td align="center" valign="top" charoff="50">11,287,205</td>
<td align="center" valign="top" charoff="50">25,675</td>
<td align="center" valign="top" charoff="50">73.62</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC2</td>
<td align="center" valign="top" charoff="50">11,695,092</td>
<td align="center" valign="top" charoff="50">11,085,589</td>
<td align="center" valign="top" charoff="50">25,046</td>
<td align="center" valign="top" charoff="50">73.10</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC3</td>
<td align="center" valign="top" charoff="50">12,087,344</td>
<td align="center" valign="top" charoff="50">11,566,921</td>
<td align="center" valign="top" charoff="50">24,728</td>
<td align="center" valign="top" charoff="50">71.81</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC4</td>
<td align="center" valign="top" charoff="50">11,734,817</td>
<td align="center" valign="top" charoff="50">11,298,495</td>
<td align="center" valign="top" charoff="50">24,419</td>
<td align="center" valign="top" charoff="50">73.45</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC5</td>
<td align="center" valign="top" charoff="50">11,678,523</td>
<td align="center" valign="top" charoff="50">11,180,375</td>
<td align="center" valign="top" charoff="50">24,539</td>
<td align="center" valign="top" charoff="50">72.98</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC6</td>
<td align="center" valign="top" charoff="50">11,693,653</td>
<td align="center" valign="top" charoff="50">11,288,167</td>
<td align="center" valign="top" charoff="50">22,323</td>
<td align="center" valign="top" charoff="50">74.25</td>
</tr>
<tr><td align="left" valign="top" charoff="50">RC7</td>
<td align="center" valign="top" charoff="50">12,468,584</td>
<td align="center" valign="top" charoff="50">11,734,107</td>
<td align="center" valign="top" charoff="50">22,473</td>
<td align="center" valign="top" charoff="50">76.01</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL1</td>
<td align="center" valign="top" charoff="50">12,098,295</td>
<td align="center" valign="top" charoff="50">11,396,714</td>
<td align="center" valign="top" charoff="50">26,062</td>
<td align="center" valign="top" charoff="50">75.83</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL2</td>
<td align="center" valign="top" charoff="50">12,449,966</td>
<td align="center" valign="top" charoff="50">11,712,248</td>
<td align="center" valign="top" charoff="50">25,643</td>
<td align="center" valign="top" charoff="50">75.47</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL3</td>
<td align="center" valign="top" charoff="50">12,564,888</td>
<td align="center" valign="top" charoff="50">11,788,331</td>
<td align="center" valign="top" charoff="50">24,220</td>
<td align="center" valign="top" charoff="50">73.63</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL4</td>
<td align="center" valign="top" charoff="50">12,257,369</td>
<td align="center" valign="top" charoff="50">10,177,818</td>
<td align="center" valign="top" charoff="50">23,495</td>
<td align="center" valign="top" charoff="50">73.74</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL5</td>
<td align="center" valign="top" charoff="50">12,304,901</td>
<td align="center" valign="top" charoff="50">10,475,211</td>
<td align="center" valign="top" charoff="50">23,431</td>
<td align="center" valign="top" charoff="50">74.09</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL6</td>
<td align="center" valign="top" charoff="50">11,932,440</td>
<td align="center" valign="top" charoff="50">11,371,346</td>
<td align="center" valign="top" charoff="50">22,837</td>
<td align="center" valign="top" charoff="50">74.24</td>
</tr>
<tr><td align="left" valign="top" charoff="50">YL7</td>
<td align="center" valign="top" charoff="50">11,123,512</td>
<td align="center" valign="top" charoff="50">10,582,639</td>
<td align="center" valign="top" charoff="50">21,394</td>
<td align="center" valign="top" charoff="50">75.92</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="t2"><label>Table 2</label>
<caption><title>GO slim gene counts in five pear cultivars.</title>
</caption>
<table frame="hsides" rules="groups" border="1"><colgroup><col align="left"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
</colgroup>
<thead valign="bottom"><tr><th rowspan="2" align="left" valign="top" charoff="50">GO Slim Term</th>
<th colspan="4" align="center" valign="top" charoff="50">HS</th>
<th colspan="4" align="center" valign="top" charoff="50">KRLXL</th>
<th colspan="4" align="center" valign="top" charoff="50">NG</th>
<th colspan="4" align="center" valign="top" charoff="50">RC</th>
<th colspan="4" align="center" valign="top" charoff="50">YL</th>
</tr>
<tr><th align="center" valign="top" charoff="50">a</th>
<th align="center" valign="top" charoff="50">b</th>
<th align="center" valign="top" charoff="50">c</th>
<th align="center" valign="top" charoff="50">d</th>
<th align="center" valign="top" charoff="50">a</th>
<th align="center" valign="top" charoff="50">b</th>
<th align="center" valign="top" charoff="50">c</th>
<th align="center" valign="top" charoff="50">d</th>
<th align="center" valign="top" charoff="50">a</th>
<th align="center" valign="top" charoff="50">b</th>
<th align="center" valign="top" charoff="50">c</th>
<th align="center" valign="top" charoff="50">d</th>
<th align="center" valign="top" charoff="50">a</th>
<th align="center" valign="top" charoff="50">b</th>
<th align="center" valign="top" charoff="50">c</th>
<th align="center" valign="top" charoff="50">d</th>
<th align="center" valign="top" charoff="50">a</th>
<th align="center" valign="top" charoff="50">b</th>
<th align="center" valign="top" charoff="50">c</th>
<th align="center" valign="top" charoff="50">d</th>
</tr>
</thead>
<tbody valign="top"><tr><td align="left" valign="top" charoff="50">metabolic process</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">2427</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">11</td>
<td align="center" valign="top" charoff="50">2304</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">14</td>
<td align="center" valign="top" charoff="50">2422</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">17</td>
<td align="center" valign="top" charoff="50">3961</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">1928</td>
<td align="center" valign="top" charoff="50">7</td>
</tr>
<tr><td align="left" valign="top" charoff="50">biological process</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">10</td>
<td align="center" valign="top" charoff="50">2178</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">2004</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">10</td>
<td align="center" valign="top" charoff="50">2105</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">14</td>
<td align="center" valign="top" charoff="50">3342</td>
<td align="center" valign="top" charoff="50">20</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">11</td>
<td align="center" valign="top" charoff="50">1657</td>
<td align="center" valign="top" charoff="50">8</td>
</tr>
<tr><td align="left" valign="top" charoff="50">cellular process</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">2109</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">9</td>
<td align="center" valign="top" charoff="50">1992</td>
<td align="center" valign="top" charoff="50">6</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">13</td>
<td align="center" valign="top" charoff="50">2044</td>
<td align="center" valign="top" charoff="50">7</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">15</td>
<td align="center" valign="top" charoff="50">3404</td>
<td align="center" valign="top" charoff="50">7</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">10</td>
<td align="center" valign="top" charoff="50">1656</td>
<td align="center" valign="top" charoff="50">6</td>
</tr>
<tr><td align="left" valign="top" charoff="50">protein metabolic process</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">932</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">842</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">926</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">1437</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">729</td>
<td align="center" valign="top" charoff="50">3</td>
</tr>
<tr><td align="left" valign="top" charoff="50">biosynthetic process</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">730</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">711</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">725</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">6</td>
<td align="center" valign="top" charoff="50">1240</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">578</td>
<td align="center" valign="top" charoff="50">5</td>
</tr>
<tr><td align="left" valign="top" charoff="50">nucleobase-containing compound metabolic process</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">583</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">563</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">567</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">5</td>
<td align="center" valign="top" charoff="50">977</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">446</td>
<td align="center" valign="top" charoff="50">2</td>
</tr>
<tr><td align="left" valign="top" charoff="50">cellular protein modification process</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">557</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">495</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">554</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">866</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">426</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">transport</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">413</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">443</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">426</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">702</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">361</td>
<td align="center" valign="top" charoff="50">1</td>
</tr>
<tr><td align="left" valign="top" charoff="50">carbohydrate metabolic process</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">250</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">211</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">235</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">377</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">191</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">response to stress</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">222</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">4</td>
<td align="center" valign="top" charoff="50">209</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">213</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">322</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">200</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">lipid metabolic process</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">166</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">148</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">158</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">249</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">112</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">catabolic process</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">147</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">129</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">141</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">223</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">117</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">cellular component organization</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">144</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">134</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">130</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">208</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">111</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">translation</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">128</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">117</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">123</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">189</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">85</td>
<td align="center" valign="top" charoff="50">2</td>
</tr>
<tr><td align="left" valign="top" charoff="50">cell communication</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">122</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">122</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">125</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">216</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">109</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">signal transduction</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">108</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">110</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">105</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">3</td>
<td align="center" valign="top" charoff="50">184</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">2</td>
<td align="center" valign="top" charoff="50">93</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">DNA metabolic process</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">81</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">79</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">73</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">115</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">63</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">generation of precursor metabolites and energy</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">53</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">36</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">47</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">77</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">38</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">response to biotic stimulus</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">13</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">6</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">8</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">14</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">7</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">pollination</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">13</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">11</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">19</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">31</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">15</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
<tr><td align="left" valign="top" charoff="50">pollen-pistil interaction</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">13</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">11</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">19</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">31</td>
<td align="center" valign="top" charoff="50">1</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">0</td>
<td align="center" valign="top" charoff="50">15</td>
<td align="center" valign="top" charoff="50">0</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn id="t2-fn1"><p>a: SNPs appear in the initiation codon and change the amino acid function; b: SNPs appear in the termination codon and change the amino acid function; c: SNPs appear in the exon and cause amino acid non-synonymous mutation; d: SNPs appear before the termination codon and change the amino acid function by early termination.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</floats-group>
</pmc>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhang, Ming Yue" sort="Zhang, Ming Yue" uniqKey="Zhang M" first="Ming-Yue" last="Zhang">Ming-Yue Zhang</name>
</noRegion>
<name sortKey="Qin, Meng Fan" sort="Qin, Meng Fan" uniqKey="Qin M" first="Meng-Fan" last="Qin">Meng-Fan Qin</name>
<name sortKey="Sun, Honghe" sort="Sun, Honghe" uniqKey="Sun H" first="Honghe" last="Sun">Honghe Sun</name>
<name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name>
<name sortKey="Xu, Linlin" sort="Xu, Linlin" uniqKey="Xu L" first="Linlin" last="Xu">Linlin Xu</name>
<name sortKey="Xue, Cheng" sort="Xue, Cheng" uniqKey="Xue C" first="Cheng" last="Xue">Cheng Xue</name>
<name sortKey="Zhang, Shaoling" sort="Zhang, Shaoling" uniqKey="Zhang S" first="Shaoling" last="Zhang">Shaoling Zhang</name>
</country>
</tree>
</affiliations>
</record>
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