Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom
Identifieur interne : 001D24 ( Ncbi/Curation ); précédent : 001D23; suivant : 001D25Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom
Auteurs : Xiaoming Song [République populaire de Chine] ; Weike Duan [République populaire de Chine] ; Zhinan Huang [République populaire de Chine] ; Gaofeng Liu [République populaire de Chine] ; Peng Wu [République populaire de Chine] ; Tongkun Liu [République populaire de Chine] ; Ying Li [République populaire de Chine] ; Xilin Hou [République populaire de Chine]Source :
- Scientific Reports [ 2045-2322 ] ; 2015.
Abstract
In plants, flowering is the most important transition from vegetative to reproductive growth. The flowering patterns of monocots and eudicots are distinctly different, but few studies have described the evolutionary patterns of the flowering genes in them. In this study, we analysed the evolutionary pattern, duplication and expression level of these genes. The main results were as follows: (i) characterization of flowering genes in monocots and eudicots, including the identification of family-specific, orthologous and collinear genes; (ii) full characterization of CONSTANS-like genes in
Url:
DOI: 10.1038/srep14631
PubMed: 26416765
PubMed Central: 4586889
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom</title><author><name sortKey="Song, Xiaoming" sort="Song, Xiaoming" uniqKey="Song X" first="Xiaoming" last="Song">Xiaoming Song</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>Center of Genomics and Computational Biology, College of Life Sciences, North China University of Science and Technology</institution>, Tangshan, Hebei 063000,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Duan, Weike" sort="Duan, Weike" uniqKey="Duan W" first="Weike" last="Duan">Weike Duan</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Huang, Zhinan" sort="Huang, Zhinan" uniqKey="Huang Z" first="Zhinan" last="Huang">Zhinan Huang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Gaofeng" sort="Liu, Gaofeng" uniqKey="Liu G" first="Gaofeng" last="Liu">Gaofeng Liu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Peng" sort="Wu, Peng" uniqKey="Wu P" first="Peng" last="Wu">Peng Wu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Tongkun" sort="Liu, Tongkun" uniqKey="Liu T" first="Tongkun" last="Liu">Tongkun Liu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hou, Xilin" sort="Hou, Xilin" uniqKey="Hou X" first="Xilin" last="Hou">Xilin Hou</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26416765</idno><idno type="pmc">4586889</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4586889</idno><idno type="RBID">PMC:4586889</idno><idno type="doi">10.1038/srep14631</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000451</idno><idno type="wicri:Area/Pmc/Curation">000450</idno><idno type="wicri:Area/Pmc/Checkpoint">000561</idno><idno type="wicri:Area/Ncbi/Merge">001D24</idno><idno type="wicri:Area/Ncbi/Curation">001D24</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom</title><author><name sortKey="Song, Xiaoming" sort="Song, Xiaoming" uniqKey="Song X" first="Xiaoming" last="Song">Xiaoming Song</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>Center of Genomics and Computational Biology, College of Life Sciences, North China University of Science and Technology</institution>, Tangshan, Hebei 063000,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Duan, Weike" sort="Duan, Weike" uniqKey="Duan W" first="Weike" last="Duan">Weike Duan</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Huang, Zhinan" sort="Huang, Zhinan" uniqKey="Huang Z" first="Zhinan" last="Huang">Zhinan Huang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Gaofeng" sort="Liu, Gaofeng" uniqKey="Liu G" first="Gaofeng" last="Liu">Gaofeng Liu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Peng" sort="Wu, Peng" uniqKey="Wu P" first="Peng" last="Wu">Peng Wu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Tongkun" sort="Liu, Tongkun" uniqKey="Liu T" first="Tongkun" last="Liu">Tongkun Liu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hou, Xilin" sort="Hou, Xilin" uniqKey="Hou X" first="Xilin" last="Hou">Xilin Hou</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>In plants, flowering is the most important transition from vegetative to reproductive growth. The flowering patterns of monocots and eudicots are distinctly different, but few studies have described the evolutionary patterns of the flowering genes in them. In this study, we analysed the evolutionary pattern, duplication and expression level of these genes. The main results were as follows: (i) characterization of flowering genes in monocots and eudicots, including the identification of family-specific, orthologous and collinear genes; (ii) full characterization of CONSTANS-like genes in <italic>Brassica rapa</italic> (<italic>BraCOL</italic> genes), the key flowering genes; (iii) exploration of the evolution of <italic>COL</italic> genes in plant kingdom and construction of the evolutionary pattern of <italic>COL</italic> genes; (iv) comparative analysis of <italic>CO</italic> and <italic>FT</italic> genes between <italic>Brassicaceae</italic> and <italic>Grass</italic>, which identified several family-specific amino acids, and revealed that CO and FT protein structures were similar in <italic>B. rapa</italic> and <italic>Arabidopsis</italic> but different in rice; and (v) expression analysis of photoperiod pathway-related genes in <italic>B. rapa</italic> under different photoperiod treatments by RT-qPCR. This analysis will provide resources for understanding the flowering mechanisms and evolutionary pattern of <italic>COL</italic> genes. In addition, this genome-wide comparative study of <italic>COL</italic> genes may also provide clues for evolution of other flowering genes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Putterill, J" uniqKey="Putterill J">J. Putterill</name></author><author><name sortKey="Laurie, R" uniqKey="Laurie R">R. Laurie</name></author><author><name sortKey="Macknight, R" uniqKey="Macknight R">R. Macknight</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mouhu, K" uniqKey="Mouhu K">K. Mouhu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Srikanth, A" uniqKey="Srikanth A">A. Srikanth</name></author><author><name sortKey="Schmid, M" uniqKey="Schmid M">M. 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