Prevalence and Genetic Diversity of Giardia duodenalis and Cryptosporidium spp. among School Children in a Rural Area of the Amhara Region, North-West Ethiopia
Identifieur interne : 000E66 ( Main/Exploration ); précédent : 000E65; suivant : 000E67Prevalence and Genetic Diversity of Giardia duodenalis and Cryptosporidium spp. among School Children in a Rural Area of the Amhara Region, North-West Ethiopia
Auteurs : Aida De Lucio [Espagne] ; Aranzazu Amor-Aramendía [Espagne] ; Bego A Bailo [Espagne] ; José M. Saugar [Espagne] ; Melaku Anegagrie [Espagne] ; Ana Arroyo [Espagne] ; Beatriz L Pez-Quintana [Espagne] ; Derjew Zewdie [Éthiopie] ; Zimmam Ayehubizu [Éthiopie] ; Endalew Yizengaw [Éthiopie] ; Bayeh Abera [Éthiopie] ; Mulat Yimer [Éthiopie] ; Wondemagen Mulu [Éthiopie] ; Tadesse Hailu [Éthiopie] ; Zaida Herrador [Espagne] ; Isabel Fuentes [Espagne] ; David Carmena [Espagne]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
We report here the prevalence and genetic diversity of
The PCR-based prevalences of
Our data suggest an epidemiological scenario with an elevated transmission intensity of a wide range of
Url:
DOI: 10.1371/journal.pone.0159992
PubMed: 27466809
PubMed Central: 4965151
Affiliations:
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Le document en format XML
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spp. among School Children in a Rural Area of the Amhara Region, North-West Ethiopia</title>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Prevalence and Genetic Diversity of <italic>Giardia duodenalis</italic>
and <italic>Cryptosporidium</italic>
spp. among School Children in a Rural Area of the Amhara Region, North-West Ethiopia</title>
<author><name sortKey="De Lucio, Aida" sort="De Lucio, Aida" uniqKey="De Lucio A" first="Aida" last="De Lucio">Aida De Lucio</name>
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</author>
<author><name sortKey="Hailu, Tadesse" sort="Hailu, Tadesse" uniqKey="Hailu T" first="Tadesse" last="Hailu">Tadesse Hailu</name>
<affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>Department of Microbiology, Immunology and Parasitology, College of Medicine and Health Science, Bahir Dar, Ethiopia</addr-line>
</nlm:aff>
<country xml:lang="fr">Éthiopie</country>
<wicri:regionArea>Department of Microbiology, Immunology and Parasitology, College of Medicine and Health Science, Bahir Dar</wicri:regionArea>
<wicri:noRegion>Bahir Dar</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Herrador, Zaida" sort="Herrador, Zaida" uniqKey="Herrador Z" first="Zaida" last="Herrador">Zaida Herrador</name>
<affiliation wicri:level="3"><nlm:aff id="aff002"><addr-line>National Centre of Tropical Medicine, Madrid, Spain</addr-line>
</nlm:aff>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>National Centre of Tropical Medicine, Madrid</wicri:regionArea>
<placeName><settlement type="city">Madrid</settlement>
<region nuts="2" type="region">Communauté de Madrid</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Fuentes, Isabel" sort="Fuentes, Isabel" uniqKey="Fuentes I" first="Isabel" last="Fuentes">Isabel Fuentes</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>Parasitology Service, National Centre for Microbiology, Majadahonda, Madrid, Spain</addr-line>
</nlm:aff>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Parasitology Service, National Centre for Microbiology, Majadahonda, Madrid</wicri:regionArea>
<placeName><settlement type="city">Madrid</settlement>
<region nuts="2" type="region">Communauté de Madrid</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Carmena, David" sort="Carmena, David" uniqKey="Carmena D" first="David" last="Carmena">David Carmena</name>
<affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>Parasitology Service, National Centre for Microbiology, Majadahonda, Madrid, Spain</addr-line>
</nlm:aff>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Parasitology Service, National Centre for Microbiology, Majadahonda, Madrid</wicri:regionArea>
<placeName><settlement type="city">Madrid</settlement>
<region nuts="2" type="region">Communauté de Madrid</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><sec id="sec001"><title>Backgroud</title>
<p><italic>Giardia duodenalis</italic>
and <italic>Cryptosporidium</italic>
spp. are enteric protozoan causing gastrointestinal illness in humans and animals. Giardiasis and cryptosporidiosis are not formally considered as neglected tropical diseases, but belong to the group of poverty-related infectious diseases that impair the development and socio-economic potential of infected individuals in developing countries.</p>
</sec>
<sec id="sec002"><title>Methods</title>
<p>We report here the prevalence and genetic diversity of <italic>G</italic>
. <italic>duodenalis</italic>
and <italic>Cryptosporidium</italic>
spp. in children attending rural primary schools in the Bahir Dar district of the Amhara Region, Ethiopia. Stool samples were collected from 393 children and analysed by molecular methods. <italic>G</italic>
. <italic>duodenalis</italic>
was detected by real-time PCR, and the assemblages and sub-assemblages were determined by multilocus sequence-based genotyping of the glutamate dehydrogenase and β-giardin genes of the parasite. Detection and identification of <italic>Cryptosporidium</italic>
species was carried out by sequencing of a partial fragment of the small-subunit ribosomal RNA gene.</p>
</sec>
<sec id="sec003"><title>Principal Findings</title>
<p>The PCR-based prevalences of <italic>G</italic>
. <italic>duodenalis</italic>
and <italic>Cryptosporidium</italic>
spp. were 55.0% (216/393) and 4.6% (18/393), respectively. A total of 78 <italic>G</italic>
. <italic>duodenalis</italic>
isolates were successfully characterized, revealing the presence of sub-assemblages AII (10.3%), BIII (28.2%), and BIV (32.0%). Discordant typing results AII/AIII and BIII/BIV were identified in 7.7% and 15.4% of the isolates, respectively. An additional five (6.4%) isolates were assigned to assemblage B. No mixed infections of assemblages A+B were found. Extensive genetic variation at the nucleotide level was observed within assemblage B (but no within assemblage A), resulting in the identification of a large number of sub-types. <italic>Cryptosporidium</italic>
diversity was demonstrated by the occurrence of <italic>C</italic>
. <italic>hominis</italic>
, <italic>C</italic>
. <italic>parvum</italic>
, and <italic>C</italic>
. <italic>viatorum</italic>
in the population under study.</p>
</sec>
<sec id="sec004"><title>Conclusions</title>
<p>Our data suggest an epidemiological scenario with an elevated transmission intensity of a wide range of <italic>G</italic>
. <italic>duodenalis</italic>
genetic variants. Importantly, the elevated degree of genetic diversity observed within assemblage B is consistent with the occurrence of intra-assemblage recombination in <italic>G</italic>
. <italic>duodenalis</italic>
.</p>
</sec>
</div>
</front>
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</author>
<author><name sortKey="Sanchez Serrano, Lp" uniqKey="Sanchez Serrano L">LP Sánchez-Serrano</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hussein, Ai" uniqKey="Hussein A">AI Hussein</name>
</author>
<author><name sortKey="Yamaguchi, T" uniqKey="Yamaguchi T">T Yamaguchi</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Siripattanapipong, S" uniqKey="Siripattanapipong S">S Siripattanapipong</name>
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<author><name sortKey="Saksirisampant, W" uniqKey="Saksirisampant W">W Saksirisampant</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cooper, Ma" uniqKey="Cooper M">MA Cooper</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Morrison, Hg" uniqKey="Morrison H">HG Morrison</name>
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<author><name sortKey="Mcarthur, Ag" uniqKey="Mcarthur A">AG McArthur</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Franzen, O" uniqKey="Franzen O">O Franzen</name>
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</analytic>
</biblStruct>
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<author><name sortKey="Sv Rd, Sg" uniqKey="Sv Rd S">SG Svärd</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Andersson, Jo" uniqKey="Andersson J">JO Andersson</name>
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</biblStruct>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Lasek Nesselquist, E" uniqKey="Lasek Nesselquist E">E Lasek-Nesselquist</name>
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<author><name sortKey="Welch, Dm" uniqKey="Welch D">DM Welch</name>
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<author><name sortKey="Sogin, Ml" uniqKey="Sogin M">ML Sogin</name>
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</biblStruct>
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<author><name sortKey="Chalmers, Rm" uniqKey="Chalmers R">RM Chalmers</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Insulander, M" uniqKey="Insulander M">M Insulander</name>
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</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list><country><li>Espagne</li>
<li>Éthiopie</li>
</country>
<region><li>Communauté de Madrid</li>
</region>
<settlement><li>Madrid</li>
</settlement>
</list>
<tree><country name="Espagne"><region name="Communauté de Madrid"><name sortKey="De Lucio, Aida" sort="De Lucio, Aida" uniqKey="De Lucio A" first="Aida" last="De Lucio">Aida De Lucio</name>
</region>
<name sortKey="Amor Aramendia, Aranzazu" sort="Amor Aramendia, Aranzazu" uniqKey="Amor Aramendia A" first="Aranzazu" last="Amor-Aramendía">Aranzazu Amor-Aramendía</name>
<name sortKey="Amor Aramendia, Aranzazu" sort="Amor Aramendia, Aranzazu" uniqKey="Amor Aramendia A" first="Aranzazu" last="Amor-Aramendía">Aranzazu Amor-Aramendía</name>
<name sortKey="Anegagrie, Melaku" sort="Anegagrie, Melaku" uniqKey="Anegagrie M" first="Melaku" last="Anegagrie">Melaku Anegagrie</name>
<name sortKey="Anegagrie, Melaku" sort="Anegagrie, Melaku" uniqKey="Anegagrie M" first="Melaku" last="Anegagrie">Melaku Anegagrie</name>
<name sortKey="Arroyo, Ana" sort="Arroyo, Ana" uniqKey="Arroyo A" first="Ana" last="Arroyo">Ana Arroyo</name>
<name sortKey="Bailo, Bego A" sort="Bailo, Bego A" uniqKey="Bailo B" first="Bego A" last="Bailo">Bego A Bailo</name>
<name sortKey="Carmena, David" sort="Carmena, David" uniqKey="Carmena D" first="David" last="Carmena">David Carmena</name>
<name sortKey="Fuentes, Isabel" sort="Fuentes, Isabel" uniqKey="Fuentes I" first="Isabel" last="Fuentes">Isabel Fuentes</name>
<name sortKey="Herrador, Zaida" sort="Herrador, Zaida" uniqKey="Herrador Z" first="Zaida" last="Herrador">Zaida Herrador</name>
<name sortKey="L Pez Quintana, Beatriz" sort="L Pez Quintana, Beatriz" uniqKey="L Pez Quintana B" first="Beatriz" last="L Pez-Quintana">Beatriz L Pez-Quintana</name>
<name sortKey="Saugar, Jose M" sort="Saugar, Jose M" uniqKey="Saugar J" first="José M." last="Saugar">José M. Saugar</name>
</country>
<country name="Éthiopie"><noRegion><name sortKey="Zewdie, Derjew" sort="Zewdie, Derjew" uniqKey="Zewdie D" first="Derjew" last="Zewdie">Derjew Zewdie</name>
</noRegion>
<name sortKey="Abera, Bayeh" sort="Abera, Bayeh" uniqKey="Abera B" first="Bayeh" last="Abera">Bayeh Abera</name>
<name sortKey="Ayehubizu, Zimmam" sort="Ayehubizu, Zimmam" uniqKey="Ayehubizu Z" first="Zimmam" last="Ayehubizu">Zimmam Ayehubizu</name>
<name sortKey="Hailu, Tadesse" sort="Hailu, Tadesse" uniqKey="Hailu T" first="Tadesse" last="Hailu">Tadesse Hailu</name>
<name sortKey="Mulu, Wondemagen" sort="Mulu, Wondemagen" uniqKey="Mulu W" first="Wondemagen" last="Mulu">Wondemagen Mulu</name>
<name sortKey="Yimer, Mulat" sort="Yimer, Mulat" uniqKey="Yimer M" first="Mulat" last="Yimer">Mulat Yimer</name>
<name sortKey="Yizengaw, Endalew" sort="Yizengaw, Endalew" uniqKey="Yizengaw E" first="Endalew" last="Yizengaw">Endalew Yizengaw</name>
</country>
</tree>
</affiliations>
</record>
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