Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
Identifieur interne : 000572 ( Main/Exploration ); précédent : 000571; suivant : 000573Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
Auteurs : Henk C. Den Bakker [États-Unis] ; Craig A. Cummings [États-Unis] ; Vania Ferreira [États-Unis] ; Paolo Vatta [États-Unis] ; Renato H. Orsi [États-Unis] ; Lovorka Degoricija [États-Unis] ; Melissa Barker [États-Unis] ; Olga Petrauskene [États-Unis] ; Manohar R. Furtado [États-Unis] ; Martin Wiedmann [États-Unis]Source :
- BMC Genomics [ 1471-2164 ] ; 2010.
Abstract
The bacterial genus
To better understand genome evolution and evolution of virulence characteristics in
Genome evolution in
Url:
DOI: 10.1186/1471-2164-11-688
PubMed: 21126366
PubMed Central: 3019230
Affiliations:
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Le document en format XML
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<author><name sortKey="Furtado, Manohar R" sort="Furtado, Manohar R" uniqKey="Furtado M" first="Manohar R" last="Furtado">Manohar R. Furtado</name>
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<author><name sortKey="Wiedmann, Martin" sort="Wiedmann, Martin" uniqKey="Wiedmann M" first="Martin" last="Wiedmann">Martin Wiedmann</name>
<affiliation wicri:level="4"><nlm:aff id="I1">Department of Food Science, Cornell University, Ithaca NY, 14853, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>The bacterial genus <italic>Listeria </italic>
contains pathogenic and non-pathogenic species, including the pathogens <italic>L. monocytogenes </italic>
and <italic>L. ivanovii</italic>
, both of which carry homologous virulence gene clusters such as the <italic>prfA </italic>
cluster and clusters of internalin genes. Initial evidence for multiple deletions of the <italic>prfA </italic>
cluster during the evolution of <italic>Listeria </italic>
indicates that this genus provides an interesting model for studying the evolution of virulence and also presents practical challenges with regard to definition of pathogenic strains.</p>
</sec>
<sec><title>Results</title>
<p>To better understand genome evolution and evolution of virulence characteristics in <italic>Listeria</italic>
, we used a next generation sequencing approach to generate draft genomes for seven strains representing <italic>Listeria </italic>
species or clades for which genome sequences were not available. Comparative analyses of these draft genomes and six publicly available genomes, which together represent the main <italic>Listeria </italic>
species, showed evidence for (i) a pangenome with 2,032 core and 2,918 accessory genes identified to date, (ii) a critical role of gene loss events in transition of <italic>Listeria </italic>
species from facultative pathogen to saprotroph, even though a consistent pattern of gene loss seemed to be absent, and a number of isolates representing non-pathogenic species still carried some virulence associated genes, and (iii) divergence of modern pathogenic and non-pathogenic <italic>Listeria </italic>
species and strains, most likely circa 47 million years ago, from a pathogenic common ancestor that contained key virulence genes.</p>
</sec>
<sec><title>Conclusions</title>
<p>Genome evolution in <italic>Listeria </italic>
involved limited gene loss and acquisition as supported by (i) a relatively high coverage of the predicted pan-genome by the observed pan-genome, (ii) conserved genome size (between 2.8 and 3.2 Mb), and (iii) a highly syntenic genome. Limited gene loss in <italic>Listeria </italic>
did include loss of virulence associated genes, likely associated with multiple transitions to a saprotrophic lifestyle. The genus <italic>Listeria </italic>
thus provides an example of a group of bacteria that appears to evolve through a loss of virulence rather than acquisition of virulence characteristics. While <italic>Listeria </italic>
includes a number of species-like clades, many of these putative species include clades or strains with atypical virulence associated characteristics. This information will allow for the development of genetic and genomic criteria for pathogenic strains, including development of assays that specifically detect pathogenic <italic>Listeria </italic>
strains.</p>
</sec>
</div>
</front>
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