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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Common and Well-Documented HLA Alleles: 2012 Update to the CWD Catalogue</title><author><name sortKey="Mack, Steven J" sort="Mack, Steven J" uniqKey="Mack S" first="Steven J." last="Mack">Steven J. Mack</name><affiliation><nlm:aff id="A1">Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Cano, Pedro" sort="Cano, Pedro" uniqKey="Cano P" first="Pedro" last="Cano">Pedro Cano</name><affiliation><nlm:aff id="A2">Department of Laboratory Medicine, University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA</nlm:aff></affiliation></author><author><name sortKey="Hollenbach, Jill A" sort="Hollenbach, Jill A" uniqKey="Hollenbach J" first="Jill A." last="Hollenbach">Jill A. Hollenbach</name><affiliation><nlm:aff id="A1">Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</nlm:aff></affiliation></author><author><name sortKey="He, Jun" sort="He, Jun" uniqKey="He J" first="Jun" last="He">Jun He</name><affiliation><nlm:aff id="A3">First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215006, People’s Republic of China</nlm:aff></affiliation></author><author><name sortKey="Hurley, Carolyn Katovich" sort="Hurley, Carolyn Katovich" uniqKey="Hurley C" first="Carolyn Katovich" last="Hurley">Carolyn Katovich Hurley</name><affiliation><nlm:aff id="A4">CW Bill Young Marrow Donor Recruitment and Research Program, Department of Oncology, Georgetown University, Washington DC USA</nlm:aff></affiliation></author><author><name sortKey="Middleton, Derek" sort="Middleton, Derek" uniqKey="Middleton D" first="Derek" last="Middleton">Derek Middleton</name><affiliation><nlm:aff id="A5">Transplant Immunology Laboratory, Royal Liverpool University Hospital, Liverpool, UK</nlm:aff></affiliation></author><author><name sortKey="Moraes, Maria Elisa" sort="Moraes, Maria Elisa" uniqKey="Moraes M" first="Maria Elisa" last="Moraes">Maria Elisa Moraes</name><affiliation><nlm:aff id="A6">LIG Immunogenetic Laboratory, Sao Paulo, SP, Brazil</nlm:aff></affiliation></author><author><name sortKey="Pereira, Shalini E" sort="Pereira, Shalini E" uniqKey="Pereira S" first="Shalini E." last="Pereira">Shalini E. Pereira</name><affiliation><nlm:aff id="A7">Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA</nlm:aff></affiliation></author><author><name sortKey="Kempenich, Jane H" sort="Kempenich, Jane H" uniqKey="Kempenich J" first="Jane H." last="Kempenich">Jane H. Kempenich</name><affiliation><nlm:aff id="A8">Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Reed, Elaine F" sort="Reed, Elaine F" uniqKey="Reed E" first="Elaine F." last="Reed">Elaine F. Reed</name><affiliation><nlm:aff id="A9">David Geffen School of Medicine, University of California, Los Angeles, USA</nlm:aff></affiliation></author><author><name sortKey="Setterholm, Michelle" sort="Setterholm, Michelle" uniqKey="Setterholm M" first="Michelle" last="Setterholm">Michelle Setterholm</name><affiliation><nlm:aff id="A8">Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Smith, Anajane G" sort="Smith, Anajane G" uniqKey="Smith A" first="Anajane G." last="Smith">Anajane G. Smith</name><affiliation><nlm:aff id="A7">Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA</nlm:aff></affiliation></author><author><name sortKey="Tilanus, Marcel G" sort="Tilanus, Marcel G" uniqKey="Tilanus M" first="Marcel G." last="Tilanus">Marcel G. Tilanus</name><affiliation><nlm:aff id="A10">Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Centre, the Netherlands</nlm:aff></affiliation></author><author><name sortKey="Torres, Margareth" sort="Torres, Margareth" uniqKey="Torres M" first="Margareth" last="Torres">Margareth Torres</name><affiliation><nlm:aff id="A6">LIG Immunogenetic Laboratory, Sao Paulo, SP, Brazil</nlm:aff></affiliation></author><author><name sortKey="Varney, Michael D" sort="Varney, Michael D" uniqKey="Varney M" first="Michael D." last="Varney">Michael D. Varney</name><affiliation><nlm:aff id="A11">Victorian Transplantation and Immunogenetics Service, Australian Red Cross Blood Service, Melbourne, VIC, Australia</nlm:aff></affiliation></author><author><name sortKey="Voorter, Christien E M" sort="Voorter, Christien E M" uniqKey="Voorter C" first="Christien E. M." last="Voorter">Christien E. M. Voorter</name><affiliation><nlm:aff id="A10">Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Centre, the Netherlands</nlm:aff></affiliation></author><author><name sortKey="Fischer, Gottfried F" sort="Fischer, Gottfried F" uniqKey="Fischer G" first="Gottfried F." last="Fischer">Gottfried F. Fischer</name><affiliation><nlm:aff id="A12">Division of Blood Group Serology, Medical University of Vienna, Vienna, Austria</nlm:aff></affiliation></author><author><name sortKey="Fleischhauer, Katharina" sort="Fleischhauer, Katharina" uniqKey="Fleischhauer K" first="Katharina" last="Fleischhauer">Katharina Fleischhauer</name><affiliation><nlm:aff id="A13">Unit of Molecular and Functional Immunogenetics, San Raffaele Scientific Institute, 20132 Milan, Italy</nlm:aff></affiliation></author><author><name sortKey="Goodridge, Damian" sort="Goodridge, Damian" uniqKey="Goodridge D" first="Damian" last="Goodridge">Damian Goodridge</name><affiliation><nlm:aff id="A14">Conexio Genomics, Perth, Australia</nlm:aff></affiliation></author><author><name sortKey="Klitz, William" sort="Klitz, William" uniqKey="Klitz W" first="William" last="Klitz">William Klitz</name><affiliation><nlm:aff id="A15">School of Public Health, University of California, Berkeley, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Little, Ann Margaret" sort="Little, Ann Margaret" uniqKey="Little A" first="Ann-Margaret" last="Little">Ann-Margaret Little</name><affiliation><nlm:aff id="A16">Gartnavel General Hospital, Histocompatibility and Immunogenetics Service, Glasgow, UK</nlm:aff></affiliation></author><author><name sortKey="Maiers, Martin" sort="Maiers, Martin" uniqKey="Maiers M" first="Martin" last="Maiers">Martin Maiers</name><affiliation><nlm:aff id="A8">Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Marsh, Steven G E" sort="Marsh, Steven G E" uniqKey="Marsh S" first="Steven G. E." last="Marsh">Steven G. E. Marsh</name><affiliation><nlm:aff id="A17">Anthony Nolan Research Institute and UCL Cancer Institute, Royal Free Campus, London, UK</nlm:aff></affiliation></author><author><name sortKey="Muller, Carlheinz R" sort="Muller, Carlheinz R" uniqKey="Muller C" first="Carlheinz R." last="Müller">Carlheinz R. Müller</name><affiliation><nlm:aff id="A18">German National Bone Marrow Registry, Ulm, Germany</nlm:aff></affiliation></author><author><name sortKey="Noreen, Harriet" sort="Noreen, Harriet" uniqKey="Noreen H" first="Harriet" last="Noreen">Harriet Noreen</name><affiliation><nlm:aff id="A19">University of Minnesota Hospital and Clinics, Fairview, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Rozemuller, Erik H" sort="Rozemuller, Erik H" uniqKey="Rozemuller E" first="Erik H." last="Rozemuller">Erik H. Rozemuller</name><affiliation><nlm:aff id="A20">GenDx B.V., Utrecht, the Netherlands</nlm:aff></affiliation></author><author><name sortKey="Sanchez Mazas, Alicia" sort="Sanchez Mazas, Alicia" uniqKey="Sanchez Mazas A" first="Alicia" last="Sanchez-Mazas">Alicia Sanchez-Mazas</name><affiliation><nlm:aff id="A21">Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution - Anthropology Unit, University of Geneva, Geneva, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Senitzer, David" sort="Senitzer, David" uniqKey="Senitzer D" first="David" last="Senitzer">David Senitzer</name><affiliation><nlm:aff id="A22">HLA Lab, City of Hope, Duarte, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Trachtenberg, Elizabeth" sort="Trachtenberg, Elizabeth" uniqKey="Trachtenberg E" first="Elizabeth" last="Trachtenberg">Elizabeth Trachtenberg</name><affiliation><nlm:aff id="A1">Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Fernandez Vina, Marcelo" sort="Fernandez Vina, Marcelo" uniqKey="Fernandez Vina M" first="Marcelo" last="Fernandez-Vina">Marcelo Fernandez-Vina</name><affiliation><nlm:aff id="A23">Department of Pathology, Stanford University, Stanford, California, USA</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23510415</idno><idno type="pmc">3634360</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634360</idno><idno type="RBID">PMC:3634360</idno><idno type="doi">10.1111/tan.12093</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000165</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000165</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Common and Well-Documented HLA Alleles: 2012 Update to the CWD Catalogue</title><author><name sortKey="Mack, Steven J" sort="Mack, Steven J" uniqKey="Mack S" first="Steven J." last="Mack">Steven J. Mack</name><affiliation><nlm:aff id="A1">Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Cano, Pedro" sort="Cano, Pedro" uniqKey="Cano P" first="Pedro" last="Cano">Pedro Cano</name><affiliation><nlm:aff id="A2">Department of Laboratory Medicine, University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA</nlm:aff></affiliation></author><author><name sortKey="Hollenbach, Jill A" sort="Hollenbach, Jill A" uniqKey="Hollenbach J" first="Jill A." last="Hollenbach">Jill A. Hollenbach</name><affiliation><nlm:aff id="A1">Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</nlm:aff></affiliation></author><author><name sortKey="He, Jun" sort="He, Jun" uniqKey="He J" first="Jun" last="He">Jun He</name><affiliation><nlm:aff id="A3">First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215006, People’s Republic of China</nlm:aff></affiliation></author><author><name sortKey="Hurley, Carolyn Katovich" sort="Hurley, Carolyn Katovich" uniqKey="Hurley C" first="Carolyn Katovich" last="Hurley">Carolyn Katovich Hurley</name><affiliation><nlm:aff id="A4">CW Bill Young Marrow Donor Recruitment and Research Program, Department of Oncology, Georgetown University, Washington DC USA</nlm:aff></affiliation></author><author><name sortKey="Middleton, Derek" sort="Middleton, Derek" uniqKey="Middleton D" first="Derek" last="Middleton">Derek Middleton</name><affiliation><nlm:aff id="A5">Transplant Immunology Laboratory, Royal Liverpool University Hospital, Liverpool, UK</nlm:aff></affiliation></author><author><name sortKey="Moraes, Maria Elisa" sort="Moraes, Maria Elisa" uniqKey="Moraes M" first="Maria Elisa" last="Moraes">Maria Elisa Moraes</name><affiliation><nlm:aff id="A6">LIG Immunogenetic Laboratory, Sao Paulo, SP, Brazil</nlm:aff></affiliation></author><author><name sortKey="Pereira, Shalini E" sort="Pereira, Shalini E" uniqKey="Pereira S" first="Shalini E." last="Pereira">Shalini E. Pereira</name><affiliation><nlm:aff id="A7">Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA</nlm:aff></affiliation></author><author><name sortKey="Kempenich, Jane H" sort="Kempenich, Jane H" uniqKey="Kempenich J" first="Jane H." last="Kempenich">Jane H. Kempenich</name><affiliation><nlm:aff id="A8">Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Reed, Elaine F" sort="Reed, Elaine F" uniqKey="Reed E" first="Elaine F." last="Reed">Elaine F. Reed</name><affiliation><nlm:aff id="A9">David Geffen School of Medicine, University of California, Los Angeles, USA</nlm:aff></affiliation></author><author><name sortKey="Setterholm, Michelle" sort="Setterholm, Michelle" uniqKey="Setterholm M" first="Michelle" last="Setterholm">Michelle Setterholm</name><affiliation><nlm:aff id="A8">Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Smith, Anajane G" sort="Smith, Anajane G" uniqKey="Smith A" first="Anajane G." last="Smith">Anajane G. Smith</name><affiliation><nlm:aff id="A7">Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA</nlm:aff></affiliation></author><author><name sortKey="Tilanus, Marcel G" sort="Tilanus, Marcel G" uniqKey="Tilanus M" first="Marcel G." last="Tilanus">Marcel G. Tilanus</name><affiliation><nlm:aff id="A10">Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Centre, the Netherlands</nlm:aff></affiliation></author><author><name sortKey="Torres, Margareth" sort="Torres, Margareth" uniqKey="Torres M" first="Margareth" last="Torres">Margareth Torres</name><affiliation><nlm:aff id="A6">LIG Immunogenetic Laboratory, Sao Paulo, SP, Brazil</nlm:aff></affiliation></author><author><name sortKey="Varney, Michael D" sort="Varney, Michael D" uniqKey="Varney M" first="Michael D." last="Varney">Michael D. Varney</name><affiliation><nlm:aff id="A11">Victorian Transplantation and Immunogenetics Service, Australian Red Cross Blood Service, Melbourne, VIC, Australia</nlm:aff></affiliation></author><author><name sortKey="Voorter, Christien E M" sort="Voorter, Christien E M" uniqKey="Voorter C" first="Christien E. M." last="Voorter">Christien E. M. Voorter</name><affiliation><nlm:aff id="A10">Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Centre, the Netherlands</nlm:aff></affiliation></author><author><name sortKey="Fischer, Gottfried F" sort="Fischer, Gottfried F" uniqKey="Fischer G" first="Gottfried F." last="Fischer">Gottfried F. Fischer</name><affiliation><nlm:aff id="A12">Division of Blood Group Serology, Medical University of Vienna, Vienna, Austria</nlm:aff></affiliation></author><author><name sortKey="Fleischhauer, Katharina" sort="Fleischhauer, Katharina" uniqKey="Fleischhauer K" first="Katharina" last="Fleischhauer">Katharina Fleischhauer</name><affiliation><nlm:aff id="A13">Unit of Molecular and Functional Immunogenetics, San Raffaele Scientific Institute, 20132 Milan, Italy</nlm:aff></affiliation></author><author><name sortKey="Goodridge, Damian" sort="Goodridge, Damian" uniqKey="Goodridge D" first="Damian" last="Goodridge">Damian Goodridge</name><affiliation><nlm:aff id="A14">Conexio Genomics, Perth, Australia</nlm:aff></affiliation></author><author><name sortKey="Klitz, William" sort="Klitz, William" uniqKey="Klitz W" first="William" last="Klitz">William Klitz</name><affiliation><nlm:aff id="A15">School of Public Health, University of California, Berkeley, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Little, Ann Margaret" sort="Little, Ann Margaret" uniqKey="Little A" first="Ann-Margaret" last="Little">Ann-Margaret Little</name><affiliation><nlm:aff id="A16">Gartnavel General Hospital, Histocompatibility and Immunogenetics Service, Glasgow, UK</nlm:aff></affiliation></author><author><name sortKey="Maiers, Martin" sort="Maiers, Martin" uniqKey="Maiers M" first="Martin" last="Maiers">Martin Maiers</name><affiliation><nlm:aff id="A8">Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Marsh, Steven G E" sort="Marsh, Steven G E" uniqKey="Marsh S" first="Steven G. E." last="Marsh">Steven G. E. Marsh</name><affiliation><nlm:aff id="A17">Anthony Nolan Research Institute and UCL Cancer Institute, Royal Free Campus, London, UK</nlm:aff></affiliation></author><author><name sortKey="Muller, Carlheinz R" sort="Muller, Carlheinz R" uniqKey="Muller C" first="Carlheinz R." last="Müller">Carlheinz R. Müller</name><affiliation><nlm:aff id="A18">German National Bone Marrow Registry, Ulm, Germany</nlm:aff></affiliation></author><author><name sortKey="Noreen, Harriet" sort="Noreen, Harriet" uniqKey="Noreen H" first="Harriet" last="Noreen">Harriet Noreen</name><affiliation><nlm:aff id="A19">University of Minnesota Hospital and Clinics, Fairview, Minneapolis, MN USA</nlm:aff></affiliation></author><author><name sortKey="Rozemuller, Erik H" sort="Rozemuller, Erik H" uniqKey="Rozemuller E" first="Erik H." last="Rozemuller">Erik H. Rozemuller</name><affiliation><nlm:aff id="A20">GenDx B.V., Utrecht, the Netherlands</nlm:aff></affiliation></author><author><name sortKey="Sanchez Mazas, Alicia" sort="Sanchez Mazas, Alicia" uniqKey="Sanchez Mazas A" first="Alicia" last="Sanchez-Mazas">Alicia Sanchez-Mazas</name><affiliation><nlm:aff id="A21">Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution - Anthropology Unit, University of Geneva, Geneva, Switzerland</nlm:aff></affiliation></author><author><name sortKey="Senitzer, David" sort="Senitzer, David" uniqKey="Senitzer D" first="David" last="Senitzer">David Senitzer</name><affiliation><nlm:aff id="A22">HLA Lab, City of Hope, Duarte, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Trachtenberg, Elizabeth" sort="Trachtenberg, Elizabeth" uniqKey="Trachtenberg E" first="Elizabeth" last="Trachtenberg">Elizabeth Trachtenberg</name><affiliation><nlm:aff id="A1">Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</nlm:aff></affiliation></author><author><name sortKey="Fernandez Vina, Marcelo" sort="Fernandez Vina, Marcelo" uniqKey="Fernandez Vina M" first="Marcelo" last="Fernandez-Vina">Marcelo Fernandez-Vina</name><affiliation><nlm:aff id="A23">Department of Pathology, Stanford University, Stanford, California, USA</nlm:aff></affiliation></author></analytic><series><title level="j">Tissue antigens</title><idno type="ISSN">0001-2815</idno><idno type="eISSN">1399-0039</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">We have updated the catalogue of common and well-documented (CWD) HLA alleles to reflect current understanding of the prevalence of specific allele sequences. The original CWD catalogue designated 721 alleles at the HLA-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, -DQB1, and –DPB1 loci in IMGT/HLA Database release 2.15.0 as being CWD. The updated CWD catalogue designates 1122 alleles at the HLA-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, -DQB1, -DPA1 and –DPB1 loci as being CWD, and represents 14.3% of the HLA alleles in IMGT/HLA Database release 3.9.0. In particular, we identified 415 of these alleles as being “common” (having known frequencies) and 707 as being “well-documented” on the basis of ~140,000 sequence-based typing observations and available HLA haplotype data. Using these allele prevalence data, we have also assigned CWD status to specific G and P designations. We identified 147/151 G groups and 290/415 P groups as being CWD. The CWD catalogue will be updated on a regular basis moving forward, and will incorporate changes to the IMGT/HLA Database as well as empirical data from the histocompatibility and immunogenetics community. This version 2.0.0 of the CWD catalogue is available online at <ext-link ext-link-type="uri" xlink:href="cwd.immunogenomics.org">cwd.immunogenomics.org</ext-link>, and will be integrated into the Allele Frequencies Net Database, the IMGT/HLA Database and National Marrow Donor Program’s bioinformatics web pages.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">0331072</journal-id><journal-id journal-id-type="pubmed-jr-id">7755</journal-id><journal-id journal-id-type="nlm-ta">Tissue Antigens</journal-id><journal-id journal-id-type="iso-abbrev">Tissue Antigens</journal-id><journal-title-group><journal-title>Tissue antigens</journal-title></journal-title-group><issn pub-type="ppub">0001-2815</issn><issn pub-type="epub">1399-0039</issn></journal-meta><article-meta><article-id pub-id-type="pmid">23510415</article-id><article-id pub-id-type="pmc">3634360</article-id><article-id pub-id-type="doi">10.1111/tan.12093</article-id><article-id pub-id-type="manuscript">NIHMS447773</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Common and Well-Documented HLA Alleles: 2012 Update to the CWD Catalogue</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Mack</surname><given-names>Steven J.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Cano</surname><given-names>Pedro</given-names></name><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Hollenbach</surname><given-names>Jill A.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>He</surname><given-names>Jun</given-names></name><xref ref-type="aff" rid="A3">3</xref></contrib><contrib contrib-type="author"><name><surname>Hurley</surname><given-names>Carolyn Katovich</given-names></name><xref ref-type="aff" rid="A4">4</xref></contrib><contrib contrib-type="author"><name><surname>Middleton</surname><given-names>Derek</given-names></name><xref ref-type="aff" rid="A5">5</xref></contrib><contrib contrib-type="author"><name><surname>Moraes</surname><given-names>Maria Elisa</given-names></name><xref ref-type="aff" rid="A6">6</xref></contrib><contrib contrib-type="author"><name><surname>Pereira</surname><given-names>Shalini E.</given-names></name><xref ref-type="aff" rid="A7">7</xref></contrib><contrib contrib-type="author"><name><surname>Kempenich</surname><given-names>Jane H.</given-names></name><xref ref-type="aff" rid="A8">8</xref></contrib><contrib contrib-type="author"><name><surname>Reed</surname><given-names>Elaine F.</given-names></name><xref ref-type="aff" rid="A9">9</xref></contrib><contrib contrib-type="author"><name><surname>Setterholm</surname><given-names>Michelle</given-names></name><xref ref-type="aff" rid="A8">8</xref></contrib><contrib contrib-type="author"><name><surname>Smith</surname><given-names>AnaJane G.</given-names></name><xref ref-type="aff" rid="A7">7</xref></contrib><contrib contrib-type="author"><name><surname>Tilanus</surname><given-names>Marcel G.</given-names></name><xref ref-type="aff" rid="A10">10</xref></contrib><contrib contrib-type="author"><name><surname>Torres</surname><given-names>Margareth</given-names></name><xref ref-type="aff" rid="A6">6</xref></contrib><contrib contrib-type="author"><name><surname>Varney</surname><given-names>Michael D.</given-names></name><xref ref-type="aff" rid="A11">11</xref></contrib><contrib contrib-type="author"><name><surname>Voorter</surname><given-names>Christien E. M.</given-names></name><xref ref-type="aff" rid="A10">10</xref></contrib><contrib contrib-type="author"><name><surname>Fischer</surname><given-names>Gottfried F.</given-names></name><xref ref-type="aff" rid="A12">12</xref></contrib><contrib contrib-type="author"><name><surname>Fleischhauer</surname><given-names>Katharina</given-names></name><xref ref-type="aff" rid="A13">13</xref></contrib><contrib contrib-type="author"><name><surname>Goodridge</surname><given-names>Damian</given-names></name><xref ref-type="aff" rid="A14">14</xref></contrib><contrib contrib-type="author"><name><surname>Klitz</surname><given-names>William</given-names></name><xref ref-type="aff" rid="A15">15</xref></contrib><contrib contrib-type="author"><name><surname>Little</surname><given-names>Ann-Margaret</given-names></name><xref ref-type="aff" rid="A16">16</xref></contrib><contrib contrib-type="author"><name><surname>Maiers</surname><given-names>Martin</given-names></name><xref ref-type="aff" rid="A8">8</xref></contrib><contrib contrib-type="author"><name><surname>Marsh</surname><given-names>Steven G. E.</given-names></name><xref ref-type="aff" rid="A17">17</xref></contrib><contrib contrib-type="author"><name><surname>Müller</surname><given-names>Carlheinz R.</given-names></name><xref ref-type="aff" rid="A18">18</xref></contrib><contrib contrib-type="author"><name><surname>Noreen</surname><given-names>Harriet</given-names></name><xref ref-type="aff" rid="A19">19</xref></contrib><contrib contrib-type="author"><name><surname>Rozemuller</surname><given-names>Erik H.</given-names></name><xref ref-type="aff" rid="A20">20</xref></contrib><contrib contrib-type="author"><name><surname>Sanchez-Mazas</surname><given-names>Alicia</given-names></name><xref ref-type="aff" rid="A21">21</xref></contrib><contrib contrib-type="author"><name><surname>Senitzer</surname><given-names>David</given-names></name><xref ref-type="aff" rid="A22">22</xref></contrib><contrib contrib-type="author"><name><surname>Trachtenberg</surname><given-names>Elizabeth</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Fernandez-Vina</surname><given-names>Marcelo</given-names></name><xref ref-type="aff" rid="A23">23</xref></contrib></contrib-group><aff id="A1"><label>1</label>Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA</aff><aff id="A2"><label>2</label>Department of Laboratory Medicine, University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA</aff><aff id="A3"><label>3</label>First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215006, People’s Republic of China</aff><aff id="A4"><label>4</label>CW Bill Young Marrow Donor Recruitment and Research Program, Department of Oncology, Georgetown University, Washington DC USA</aff><aff id="A5"><label>5</label>Transplant Immunology Laboratory, Royal Liverpool University Hospital, Liverpool, UK</aff><aff id="A6"><label>6</label>LIG Immunogenetic Laboratory, Sao Paulo, SP, Brazil</aff><aff id="A7"><label>7</label>Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA</aff><aff id="A8"><label>8</label>Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN USA</aff><aff id="A9"><label>9</label>David Geffen School of Medicine, University of California, Los Angeles, USA</aff><aff id="A10"><label>10</label>Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Centre, the Netherlands</aff><aff id="A11"><label>11</label>Victorian Transplantation and Immunogenetics Service, Australian Red Cross Blood Service, Melbourne, VIC, Australia</aff><aff id="A12"><label>12</label>Division of Blood Group Serology, Medical University of Vienna, Vienna, Austria</aff><aff id="A13"><label>13</label>Unit of Molecular and Functional Immunogenetics, San Raffaele Scientific Institute, 20132 Milan, Italy</aff><aff id="A14"><label>14</label>Conexio Genomics, Perth, Australia</aff><aff id="A15"><label>15</label>School of Public Health, University of California, Berkeley, CA, USA</aff><aff id="A16"><label>16</label>Gartnavel General Hospital, Histocompatibility and Immunogenetics Service, Glasgow, UK</aff><aff id="A17"><label>17</label>Anthony Nolan Research Institute and UCL Cancer Institute, Royal Free Campus, London, UK</aff><aff id="A18"><label>18</label>German National Bone Marrow Registry, Ulm, Germany</aff><aff id="A19"><label>19</label>University of Minnesota Hospital and Clinics, Fairview, Minneapolis, MN USA</aff><aff id="A20"><label>20</label>GenDx B.V., Utrecht, the Netherlands</aff><aff id="A21"><label>21</label>Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution - Anthropology Unit, University of Geneva, Geneva, Switzerland</aff><aff id="A22"><label>22</label>HLA Lab, City of Hope, Duarte, CA, USA</aff><aff id="A23"><label>23</label>Department of Pathology, Stanford University, Stanford, California, USA</aff><author-notes><corresp id="FN1">Corresponding Author: S. J. Mack; Children’s Hospital Oakland Research Institute, Oakland, CA, USA; <email>sjmack@chori.org</email></corresp></author-notes><pub-date pub-type="nihms-submitted"><day>11</day><month>3</month><year>2013</year></pub-date><pub-date pub-type="ppub"><month>4</month><year>2013</year></pub-date><pub-date pub-type="pmc-release"><day>01</day><month>4</month><year>2014</year></pub-date><volume>81</volume><issue>4</issue><fpage>194</fpage><lpage>203</lpage><abstract><p id="P1">We have updated the catalogue of common and well-documented (CWD) HLA alleles to reflect current understanding of the prevalence of specific allele sequences. The original CWD catalogue designated 721 alleles at the HLA-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, -DQB1, and –DPB1 loci in IMGT/HLA Database release 2.15.0 as being CWD. The updated CWD catalogue designates 1122 alleles at the HLA-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, -DQB1, -DPA1 and –DPB1 loci as being CWD, and represents 14.3% of the HLA alleles in IMGT/HLA Database release 3.9.0. In particular, we identified 415 of these alleles as being “common” (having known frequencies) and 707 as being “well-documented” on the basis of ~140,000 sequence-based typing observations and available HLA haplotype data. Using these allele prevalence data, we have also assigned CWD status to specific G and P designations. We identified 147/151 G groups and 290/415 P groups as being CWD. The CWD catalogue will be updated on a regular basis moving forward, and will incorporate changes to the IMGT/HLA Database as well as empirical data from the histocompatibility and immunogenetics community. This version 2.0.0 of the CWD catalogue is available online at <ext-link ext-link-type="uri" xlink:href="cwd.immunogenomics.org">cwd.immunogenomics.org</ext-link>, and will be integrated into the Allele Frequencies Net Database, the IMGT/HLA Database and National Marrow Donor Program’s bioinformatics web pages.</p></abstract><kwd-group><kwd>allele prevalence</kwd><kwd>common allele</kwd><kwd>CWD</kwd><kwd>HLA</kwd><kwd>sequence based typing</kwd><kwd>well-documented allele</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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