The Q2 Mitochondrial Haplogroup in Oceania
Identifieur interne : 000128 ( Ncbi/Merge ); précédent : 000127; suivant : 000129The Q2 Mitochondrial Haplogroup in Oceania
Auteurs : Chris A. Corser [Nouvelle-Zélande] ; Patricia A. Mclenachan [Nouvelle-Zélande] ; Melanie J. Pierson [Nouvelle-Zélande] ; G. L. Abby Harrison [Nouvelle-Zélande, Royaume-Uni] ; David Penny [Nouvelle-Zélande]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
Many details surrounding the origins of the peoples of Oceania remain to be resolved, and as a step towards this we report seven new complete mitochondrial genomes from the Q2a haplogroup, from Papua New Guinea, Fiji and Kiribati. This brings the total to eleven Q2 genomes now available. The Q haplogroup (that includes Q2) is an old and diverse lineage in Near Oceania, and is reasonably common; within our sample set of 430, 97 are of the Q haplogroup. However, only 8 are Q2, and we report 7 here. The tree with all complete Q genomes is proven to be minimal. The dating estimate for the origin of Q2 (around 35 Kya) reinforces the understanding that humans have been in Near Oceania for tens of thousands of years; nevertheless the Polynesian maternal haplogroups remain distinctive. A major focus now, with regard to Polynesian ancestry, is to address the differences and timing of the ‘Melanesian’ contribution to the maternal and paternal lineages as people moved further and further into Remote Oceania. Input from other fields such as anthropology, history and linguistics is required for a better understanding and interpretation of the genetic data.
Url:
DOI: 10.1371/journal.pone.0052022
PubMed: 23284859
PubMed Central: 3527380
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000204
- to stream Pmc, to step Curation: 000203
- to stream Pmc, to step Checkpoint: 000103
Links to Exploration step
PMC:3527380Le document en format XML
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Abby Harrison</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea><wicri:noRegion>Palmerston North</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:aff id="aff3"><addr-line>Peter Medawar Building for Pathogen Research, Oxford University, Oxford, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Peter Medawar Building for Pathogen Research, Oxford University, Oxford</wicri:regionArea><placeName><settlement type="city">Oxford</settlement><region type="country">Angleterre</region><region type="comté" nuts="2">Oxfordshire</region></placeName></affiliation></author><author><name sortKey="Penny, David" sort="Penny, David" uniqKey="Penny D" first="David" last="Penny">David Penny</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea><wicri:noRegion>Palmerston North</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Many details surrounding the origins of the peoples of Oceania remain to be resolved, and as a step towards this we report seven new complete mitochondrial genomes from the Q2a haplogroup, from Papua New Guinea, Fiji and Kiribati. This brings the total to eleven Q2 genomes now available. The Q haplogroup (that includes Q2) is an old and diverse lineage in Near Oceania, and is reasonably common; within our sample set of 430, 97 are of the Q haplogroup. However, only 8 are Q2, and we report 7 here. The tree with all complete Q genomes is proven to be minimal. The dating estimate for the origin of Q2 (around 35 Kya) reinforces the understanding that humans have been in Near Oceania for tens of thousands of years; nevertheless the Polynesian maternal haplogroups remain distinctive. A major focus now, with regard to Polynesian ancestry, is to address the differences and timing of the ‘Melanesian’ contribution to the maternal and paternal lineages as people moved further and further into Remote Oceania. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23284859</article-id><article-id pub-id-type="pmc">3527380</article-id><article-id pub-id-type="publisher-id">PONE-D-10-06018</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0052022</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology</subject><subj-group><subject>Evolutionary Biology</subject><subj-group><subject>Evolutionary Systematics</subject><subj-group><subject>Phylogenetics</subject></subj-group></subj-group><subj-group><subject>Organismal Evolution</subject><subj-group><subject>Human Evolution</subject></subj-group></subj-group><subj-group><subject>Population Genetics</subject><subj-group><subject>Haplotypes</subject></subj-group></subj-group><subj-group><subject>Evolutionary Genetics</subject></subj-group></subj-group><subj-group><subject>Genetics</subject><subj-group><subject>Population Genetics</subject><subj-group><subject>Haplotypes</subject></subj-group></subj-group><subj-group><subject>Heredity</subject></subj-group></subj-group><subj-group><subject>Population Biology</subject><subj-group><subject>Population Genetics</subject><subj-group><subject>Haplotypes</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Earth Sciences</subject><subj-group><subject>Marine and Aquatic Sciences</subject><subj-group><subject>Oceans</subject><subj-group><subject>Pacific Ocean</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Social and Behavioral Sciences</subject><subj-group><subject>Anthropology</subject><subj-group><subject>Cultural Anthropology</subject><subj-group><subject>Ethnic Groups</subject></subj-group></subj-group></subj-group><subj-group><subject>Sociology</subject><subj-group><subject>Demography</subject><subj-group><subject>Indigenous Populations</subject></subj-group></subj-group></subj-group></subj-group></article-categories><title-group><article-title>The Q2 Mitochondrial Haplogroup in Oceania</article-title><alt-title alt-title-type="running-head">The Q2 Mitochondrial Haplotype in Oceania</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Corser</surname><given-names>Chris A.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>McLenachan</surname><given-names>Patricia A.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Pierson</surname><given-names>Melanie J.</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Harrison</surname><given-names>G. L. Abby</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff3"><sup>3</sup></xref><xref ref-type="author-notes" rid="fn1"><sup>¤</sup></xref></contrib><contrib contrib-type="author"><name><surname>Penny</surname><given-names>David</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Department of Anthropology, University of Auckland, Auckland, New Zealand</addr-line></aff><aff id="aff3"><label>3</label><addr-line>Peter Medawar Building for Pathogen Research, Oxford University, Oxford, United Kingdom</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Kayser</surname><given-names>Manfred</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Erasmus University Medical Center, The Netherlands</addr-line></aff><author-notes><corresp id="cor1">* E-mail: <email>D.Penny@massey.ac.nz</email></corresp><fn fn-type="conflict"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con"><p>Conceived and designed the experiments: GLH DP. Performed the experiments: CAC PAM. Analyzed the data: PAM MJP CAC. Contributed reagents/materials/analysis tools: GLH. Wrote the paper: CAC PAM Collected the samples throughout the Pacific and typed them to haplogroups: GLH.</p></fn><fn id="fn1" fn-type="current-aff"><label>¤</label><p>Current address: Walter Eliza Hall Institute, University of Melbourne, Melbourne, Victoria, Australia</p></fn></author-notes><pub-date pub-type="collection"><year>2012</year></pub-date><pub-date pub-type="epub"><day>20</day><month>12</month><year>2012</year></pub-date><volume>7</volume><issue>12</issue><elocation-id>e52022</elocation-id><history><date date-type="received"><day>1</day><month>12</month><year>2010</year></date><date date-type="accepted"><day>9</day><month>11</month><year>2012</year></date></history><permissions><copyright-year>2012</copyright-year><copyright-holder>Corser et al</copyright-holder><license><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><abstract><p>Many details surrounding the origins of the peoples of Oceania remain to be resolved, and as a step towards this we report seven new complete mitochondrial genomes from the Q2a haplogroup, from Papua New Guinea, Fiji and Kiribati. This brings the total to eleven Q2 genomes now available. The Q haplogroup (that includes Q2) is an old and diverse lineage in Near Oceania, and is reasonably common; within our sample set of 430, 97 are of the Q haplogroup. However, only 8 are Q2, and we report 7 here. The tree with all complete Q genomes is proven to be minimal. The dating estimate for the origin of Q2 (around 35 Kya) reinforces the understanding that humans have been in Near Oceania for tens of thousands of years; nevertheless the Polynesian maternal haplogroups remain distinctive. A major focus now, with regard to Polynesian ancestry, is to address the differences and timing of the ‘Melanesian’ contribution to the maternal and paternal lineages as people moved further and further into Remote Oceania. Input from other fields such as anthropology, history and linguistics is required for a better understanding and interpretation of the genetic data.</p></abstract><funding-group><funding-statement>The Wellcome Trust funded the project under a Collaborative Research Initiative Grant ‘AL061746 Goding’, 16th Feb 2001. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="8"></page-count></counts></article-meta></front></pmc><affiliations><list><country><li>Nouvelle-Zélande</li><li>Royaume-Uni</li></country><region><li>Angleterre</li><li>Oxfordshire</li></region><settlement><li>Oxford</li></settlement></list><tree><country name="Nouvelle-Zélande"><noRegion><name sortKey="Corser, Chris A" sort="Corser, Chris A" uniqKey="Corser C" first="Chris A." last="Corser">Chris A. Corser</name></noRegion><name sortKey="Harrison, G L Abby" sort="Harrison, G L Abby" uniqKey="Harrison G" first="G. L. Abby" last="Harrison">G. L. Abby Harrison</name><name sortKey="Mclenachan, Patricia A" sort="Mclenachan, Patricia A" uniqKey="Mclenachan P" first="Patricia A." last="Mclenachan">Patricia A. Mclenachan</name><name sortKey="Penny, David" sort="Penny, David" uniqKey="Penny D" first="David" last="Penny">David Penny</name><name sortKey="Pierson, Melanie J" sort="Pierson, Melanie J" uniqKey="Pierson M" first="Melanie J." last="Pierson">Melanie J. Pierson</name></country><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Harrison, G L Abby" sort="Harrison, G L Abby" uniqKey="Harrison G" first="G. L. Abby" last="Harrison">G. L. Abby Harrison</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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