Geographical Genomics of Human Leukocyte Gene Expression Variation in Southern Morocco
Identifieur interne : 000663 ( Main/Exploration ); précédent : 000662; suivant : 000664Geographical Genomics of Human Leukocyte Gene Expression Variation in Southern Morocco
Auteurs : Youssef Idaghdour [États-Unis] ; Wendy Czika [États-Unis] ; Kevin V. Shianna [États-Unis] ; S. Hong Lee [Australie] ; Peter M. Visscher [Australie] ; Hilary C. Martin [Australie] ; Kelci Miclaus [États-Unis] ; Sami J. Jadallah [Maroc] ; David B. Goldstein [États-Unis] ; Russell D. Wolfinger [États-Unis] ; Greg Gibson [Australie]Source :
- Nature genetics [ 1061-4036 ] ; 2009.
Abstract
Studies of the genetics of gene expression reveal expression SNPs that explain variation in transcript abundance. Here we address the robustness of eSNP associations to environmental geography and population structure in a comparison of 194 Arab and Amazigh individuals from a city and two villages in southern Morocco. Gene expression differed between pairs of locations for up to a third of all transcripts, with notable enrichment for ribosomal biosynthesis and oxidative phosphorylation. Robust associations were observed in the leukocyte samples with
Url:
DOI: 10.1038/ng.495
PubMed: 19966804
PubMed Central: 2798927
Affiliations:
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<front><div type="abstract" xml:lang="en"><p id="P1">Studies of the genetics of gene expression reveal expression SNPs that explain variation in transcript abundance. Here we address the robustness of eSNP associations to environmental geography and population structure in a comparison of 194 Arab and Amazigh individuals from a city and two villages in southern Morocco. Gene expression differed between pairs of locations for up to a third of all transcripts, with notable enrichment for ribosomal biosynthesis and oxidative phosphorylation. Robust associations were observed in the leukocyte samples with <italic>cis</italic>
-eSNPs (<italic>P</italic>
< 10<sup>−08</sup>
) for 346 genes, and <italic>trans</italic>
-eSNPs (<italic>P</italic>
< 10<sup>−11</sup>
) with 10 genes. All of these were consistent across the three sample locations and after controlling for ethnicity and relatedness. No evidence for large-effect <italic>trans</italic>
-acting mediators of the pervasive environmental influence was found and instead genetic and environmental factors acted in a largely additive manner.</p>
</div>
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<author><name sortKey="Suarez, B" uniqKey="Suarez B">B Suarez</name>
</author>
<author><name sortKey="Lin, J" uniqKey="Lin J">J Lin</name>
</author>
<author><name sortKey="Reich, T" uniqKey="Reich T">T Reich</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Visscher, Pm" uniqKey="Visscher P">PM Visscher</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Soranzo, N" uniqKey="Soranzo N">N Soranzo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gibson, G" uniqKey="Gibson G">G Gibson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Purcell, S" uniqKey="Purcell S">S Purcell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Visscher, Pm" uniqKey="Visscher P">PM Visscher</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Idaghdour, Y" uniqKey="Idaghdour Y">Y Idaghdour</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Thomas, Pd" uniqKey="Thomas P">PD Thomas</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Okuda, S" uniqKey="Okuda S">S Okuda</name>
</author>
</analytic>
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</div1>
</back>
</TEI>
<affiliations><list><country><li>Australie</li>
<li>Maroc</li>
<li>États-Unis</li>
</country>
</list>
<tree><country name="États-Unis"><noRegion><name sortKey="Idaghdour, Youssef" sort="Idaghdour, Youssef" uniqKey="Idaghdour Y" first="Youssef" last="Idaghdour">Youssef Idaghdour</name>
</noRegion>
<name sortKey="Czika, Wendy" sort="Czika, Wendy" uniqKey="Czika W" first="Wendy" last="Czika">Wendy Czika</name>
<name sortKey="Goldstein, David B" sort="Goldstein, David B" uniqKey="Goldstein D" first="David B." last="Goldstein">David B. Goldstein</name>
<name sortKey="Miclaus, Kelci" sort="Miclaus, Kelci" uniqKey="Miclaus K" first="Kelci" last="Miclaus">Kelci Miclaus</name>
<name sortKey="Shianna, Kevin V" sort="Shianna, Kevin V" uniqKey="Shianna K" first="Kevin V." last="Shianna">Kevin V. Shianna</name>
<name sortKey="Wolfinger, Russell D" sort="Wolfinger, Russell D" uniqKey="Wolfinger R" first="Russell D." last="Wolfinger">Russell D. Wolfinger</name>
</country>
<country name="Australie"><noRegion><name sortKey="Lee, S Hong" sort="Lee, S Hong" uniqKey="Lee S" first="S. Hong" last="Lee">S. Hong Lee</name>
</noRegion>
<name sortKey="Gibson, Greg" sort="Gibson, Greg" uniqKey="Gibson G" first="Greg" last="Gibson">Greg Gibson</name>
<name sortKey="Martin, Hilary C" sort="Martin, Hilary C" uniqKey="Martin H" first="Hilary C." last="Martin">Hilary C. Martin</name>
<name sortKey="Visscher, Peter M" sort="Visscher, Peter M" uniqKey="Visscher P" first="Peter M." last="Visscher">Peter M. Visscher</name>
</country>
<country name="Maroc"><noRegion><name sortKey="Jadallah, Sami J" sort="Jadallah, Sami J" uniqKey="Jadallah S" first="Sami J." last="Jadallah">Sami J. Jadallah</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
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