High quality draft genome sequence of the heavy metal resistant bacterium Halomonas zincidurans type strain B6T
Identifieur interne : 000298 ( Pmc/Curation ); précédent : 000297; suivant : 000299High quality draft genome sequence of the heavy metal resistant bacterium Halomonas zincidurans type strain B6T
Auteurs : Ying-Yi Huo [République populaire de Chine] ; Zheng-Yang Li [République populaire de Chine] ; Hong Cheng [République populaire de Chine] ; Chun-Sheng Wang [République populaire de Chine] ; Xue-Wei Xu [République populaire de Chine]Source :
- Standards in Genomic Sciences [ 1944-3277 ] ; 2014.
Abstract
Url:
DOI: 10.1186/1944-3277-9-30
PubMed: 25945155
PubMed Central: 4286145
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">High quality draft genome sequence of the heavy metal resistant bacterium <italic>Halomonas zincidurans</italic> type strain B6<sup>T</sup></title><author><name sortKey="Huo, Ying Yi" sort="Huo, Ying Yi" uniqKey="Huo Y" first="Ying-Yi" last="Huo">Ying-Yi Huo</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Li, Zheng Yang" sort="Li, Zheng Yang" uniqKey="Li Z" first="Zheng-Yang" last="Li">Zheng-Yang Li</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Cheng, Hong" sort="Cheng, Hong" uniqKey="Cheng H" first="Hong" last="Cheng">Hong Cheng</name><affiliation wicri:level="1"><nlm:aff id="I2">College of Life Sciences, Zhejiang University, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Zhejiang University, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Chun Sheng" sort="Wang, Chun Sheng" uniqKey="Wang C" first="Chun-Sheng" last="Wang">Chun-Sheng Wang</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Xu, Xue Wei" sort="Xu, Xue Wei" uniqKey="Xu X" first="Xue-Wei" last="Xu">Xue-Wei Xu</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25945155</idno><idno type="pmc">4286145</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286145</idno><idno type="RBID">PMC:4286145</idno><idno type="doi">10.1186/1944-3277-9-30</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000299</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000299</idno><idno type="wicri:Area/Pmc/Curation">000298</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000298</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">High quality draft genome sequence of the heavy metal resistant bacterium <italic>Halomonas zincidurans</italic> type strain B6<sup>T</sup></title><author><name sortKey="Huo, Ying Yi" sort="Huo, Ying Yi" uniqKey="Huo Y" first="Ying-Yi" last="Huo">Ying-Yi Huo</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Li, Zheng Yang" sort="Li, Zheng Yang" uniqKey="Li Z" first="Zheng-Yang" last="Li">Zheng-Yang Li</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Cheng, Hong" sort="Cheng, Hong" uniqKey="Cheng H" first="Hong" last="Cheng">Hong Cheng</name><affiliation wicri:level="1"><nlm:aff id="I2">College of Life Sciences, Zhejiang University, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Zhejiang University, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Chun Sheng" sort="Wang, Chun Sheng" uniqKey="Wang C" first="Chun-Sheng" last="Wang">Chun-Sheng Wang</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author><author><name sortKey="Xu, Xue Wei" sort="Xu, Xue Wei" uniqKey="Xu X" first="Xue-Wei" last="Xu">Xue-Wei Xu</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou</wicri:regionArea></affiliation></author></analytic><series><title level="j">Standards in Genomic Sciences</title><idno type="eISSN">1944-3277</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Halomonas zincidurans</italic> strain B6<sup>T</sup> was isolated from a deep-sea heavy metal rich sediment from the South Atlantic Mid-Ocean Ridge. The strain showed significant resistance to heavy metals, especially to zinc. Here we describe the genome sequence and annotation, as well as the features, of the organism. The genome contains 3,325 protein-coding genes (2,848 with predicted functions), 61 tRNA genes and 6 rRNA genes. <italic>H. zincidurans</italic> strain B6<sup>T</sup> encodes 31 genes related to heavy metal resistance. And HGT may play an important role in its adaption to the heavy metal rich environment. <italic>H. zincidurans</italic> strain B6<sup>T</sup> may have potential applications in the bioremediation of heavy metal-contaminated environments.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Valls, M" uniqKey="Valls M">M Valls</name></author><author><name sortKey="De Lorenzo, V" uniqKey="De Lorenzo V">V de Lorenzo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nies, Dh" uniqKey="Nies D">DH Nies</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ozdemir, S" uniqKey="Ozdemir S">S Özdemir</name></author><author><name sortKey="Kilinc, E" uniqKey="Kilinc E">E Kilinc</name></author><author><name sortKey="Poli, A" uniqKey="Poli A">A Poli</name></author><author><name sortKey="Nicolaus, B" uniqKey="Nicolaus B">B Nicolaus</name></author><author><name sortKey="Guven, K" 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Stand Genomic Sci</journal-id><journal-id journal-id-type="iso-abbrev">Stand Genomic Sci</journal-id><journal-title-group><journal-title>Standards in Genomic Sciences</journal-title></journal-title-group><issn pub-type="epub">1944-3277</issn><publisher><publisher-name>BioMed Central</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">25945155</article-id><article-id pub-id-type="pmc">4286145</article-id><article-id pub-id-type="publisher-id">1944-3277-9-30</article-id><article-id pub-id-type="doi">10.1186/1944-3277-9-30</article-id><article-categories><subj-group subj-group-type="heading"><subject>Short Genome Report</subject></subj-group></article-categories><title-group><article-title>High quality draft genome sequence of the heavy metal resistant bacterium <italic>Halomonas zincidurans</italic> type strain B6<sup>T</sup></article-title></title-group><contrib-group><contrib contrib-type="author" id="A1"><name><surname>Huo</surname><given-names>Ying-Yi</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>yingyihuo@gmail.com</email></contrib><contrib contrib-type="author" id="A2"><name><surname>Li</surname><given-names>Zheng-Yang</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>zhengyangli@gmail.com</email></contrib><contrib contrib-type="author" id="A3"><name><surname>Cheng</surname><given-names>Hong</given-names></name><xref ref-type="aff" rid="I2">2</xref><email>hongcheng@gmail.com</email></contrib><contrib contrib-type="author" id="A4"><name><surname>Wang</surname><given-names>Chun-Sheng</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>wangsio@sio.org.cn</email></contrib><contrib contrib-type="author" corresp="yes" id="A5"><name><surname>Xu</surname><given-names>Xue-Wei</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>xuxw@sio.org.cn</email></contrib></contrib-group><aff id="I1"><label>1</label>Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, P. R. China</aff><aff id="I2"><label>2</label>College of Life Sciences, Zhejiang University, Hangzhou, P. R. China</aff><pub-date pub-type="collection"><year>2014</year></pub-date><pub-date pub-type="epub"><day>29</day><month>12</month><year>2014</year></pub-date><volume>9</volume><fpage>30</fpage><lpage>30</lpage><history><date date-type="received"><day>9</day><month>7</month><year>2014</year></date><date date-type="accepted"><day>23</day><month>11</month><year>2014</year></date></history><permissions><copyright-statement>Copyright © 2014 Huo et al.; licensee BioMed Central.</copyright-statement><copyright-year>2014</copyright-year><copyright-holder>Huo et al.; licensee BioMed Central.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0">http://creativecommons.org/licenses/by/4.0</ext-link>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">http://creativecommons.org/publicdomain/zero/1.0/</ext-link>) applies to the data made available in this article, unless otherwise stated.</license-p></license></permissions><self-uri xlink:href="http://www.standardsingenomics.com/content/9/1/30"></self-uri><abstract><p><italic>Halomonas zincidurans</italic> strain B6<sup>T</sup> was isolated from a deep-sea heavy metal rich sediment from the South Atlantic Mid-Ocean Ridge. The strain showed significant resistance to heavy metals, especially to zinc. Here we describe the genome sequence and annotation, as well as the features, of the organism. The genome contains 3,325 protein-coding genes (2,848 with predicted functions), 61 tRNA genes and 6 rRNA genes. <italic>H. zincidurans</italic> strain B6<sup>T</sup> encodes 31 genes related to heavy metal resistance. And HGT may play an important role in its adaption to the heavy metal rich environment. <italic>H. zincidurans</italic> strain B6<sup>T</sup> may have potential applications in the bioremediation of heavy metal-contaminated environments.</p></abstract><kwd-group><kwd><italic>Halomonas</italic></kwd><kwd>Heavy metal resistant</kwd><kwd>The South Atlantic Ocean</kwd><kwd>Genome</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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